Entry: PS00868

General information about the entry
Entry name CYS_MET_METAB_PP
Accession number PS00868
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00677
Name and characterization of the entry
DescriptionCys/Met metabolism enzymes pyridoxal-phosphate attachment site.
Pattern [DQ]-[LIVMFY]-x(3)-[STAGCN]-[STAGCIL]-T-K-[FYWQI]-[LIVMF]-x-G-[HQD]- [SGNH].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 43 hits in 43 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 43 hits in 43 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 93.48 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 6,pyridoxal_phosphate
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CBL_SCHPO   (O94350), CGL2_CAEEL  (P55216), CGL_HUMAN   (P32929), 
CGL_MACFA   (Q60HG7), CGL_MOUSE   (Q8VCN5), CGL_PIG     (Q19QT7), 
CGL_RAT     (P18757), CYS3_YEAST  (P31373), CYSA_STRCO  (Q59829), 
CYSD_EMENI  (P50125), CYSD_SCHPO  (O13326), MCCB_BACSU  (O05394), 
MEGL_PSEPU  (P13254), MET17_KLULA (Q92441), MET17_YEAST (P06106), 
MET7_SCHPO  (O74314), MET7_YEAST  (P47164), METB_ARATH  (P55217), 
METB_ECOLI  (P00935), METB_HAEIN  (P44502), METB_HELPJ  (Q9ZMW7), 
METB_HELPX  (Q1M0P5), METB_HELPY  (P56069), METB_HERAU  (P24601), 
METB_MYCBO  (P66876), METB_MYCLE  (P46807), METB_MYCTU  (P66875), 
METC_ARATH  (P53780), METC_BACSU  (O31632), METC_BORAV  (Q07703), 
METC_COXBU  (Q83A83), METC_ECOLI  (P06721), METC_HAEIN  (P44527), 
METC_LACLA  (P0A4K2), METC_LACLC  (P0C2T9), METC_LACLM  (A2RM21), 
METC_SALTY  (P18949), METC_YEAST  (P43623), METI_BACSU  (O31631), 
METZ_PSEAE  (P55218), STR3_YEAST  (P53101), YFHE_SCHPO  (O42851), 
YHR2_YEAST  (P38716)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
METC_RHIL3  (Q52811), METZ_MYCTU  (P95199), MGL_ARATH   (Q9SGU9)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
METC_CRYLA  (P85217)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1CL2; 1IBJ; 1N8P; 1PG8; 2FQ6; 2GQN; 2NMP; 3COG; 3ELP;

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