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Entry: PS00871

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General information about the entry

Entry name [info] CLPAB_2
Accession [info] PS00871
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00679

Name and characterization of the entry

Description [info] Chaperonins clpA/B signature 2.
Pattern [info]
[RGT]-[LIVMFY]-[DN]-x-[ST]-E-[LIVMFY]-x-[ED]-[KRQEAS]-x-[STA]-x-[STAD]-
[KRS]-[LIVM]-x-G-[STAP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 192 in 192 different sequences
Number of true positive hits 191 in 191 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 99.48 %
Recall (true positives / (true positives + false negatives)) 93.63 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
191 sequences

CLPAA_SOLLC (P31541), CLPAB_SOLLC (P31542), CLPA_BRANA  (P46523), 
CLPA_ECO57  (P0ABI1), CLPA_ECOL6  (P0ABI0), CLPA_ECOLI  (P0ABH9), 
CLPA_RHOBL  (P05444), CLPB1_ARATH (P42730), CLPB1_CHLTE (Q8KG79), 
CLPB1_NOSS1 (Q8YUL9), CLPB1_ORYSJ (Q6F2Y7), CLPB1_STRAW (Q82EU9), 
CLPB1_SYNE7 (P53533), CLPB1_SYNPX (Q7U637), CLPB1_SYNY3 (P74459), 
CLPB1_THEEB (Q8DJ40), CLPB2_NOSS1 (Q8YM56), CLPB2_ORYSJ (Q75GT3), 
CLPB2_STRAW (Q826F2), CLPB2_SYNE7 (O34209), CLPB2_SYNPX (Q7U3T3), 
CLPB2_SYNY3 (P74361), CLPB2_THEEB (Q8DG71), CLPB3_ARATH (Q9LF37), 
CLPB4_ARATH (Q8VYJ7), CLPB_AGRT5  (Q7CU92), CLPB_AQUAE  (O67588), 
CLPB_BACAN  (Q81TT4), CLPB_BACC1  (Q73BY1), CLPB_BACCR  (Q81GM5), 
CLPB_BACTN  (Q89YY3), CLPB_BDEBA  (Q6MIV0), CLPB_BIFLO  (Q8G4X4), 
CLPB_BLOFL  (Q7VQF3), CLPB_BORBR  (Q7WHB6), CLPB_BORPA  (Q7W9E6), 
CLPB_BORPE  (Q7VYV6), CLPB_BRADU  (Q89UL2), CLPB_BRUME  (Q8YJ91), 
CLPB_BRUSU  (Q7CEG6), CLPB_CAMJE  (Q9PI02), CLPB_CAUCR  (Q9A9T4), 
CLPB_CHLCV  (Q822Q4), CLPB_CHLMU  (Q9PKS5), CLPB_CHLPN  (Q7AJA9), 
CLPB_CHLTR  (O84115), CLPB_CHRVO  (Q7NWN7), CLPB_CLOAB  (Q97KG0), 
CLPB_CLOPE  (Q8XKG8), CLPB_CLOTE  (Q898C7), CLPB_CORDI  (Q6NF05), 
CLPB_COREF  (Q8FM94), CLPB_CORGL  (P53532), CLPB_COXBU  (Q83F55), 
CLPB_DEIRA  (Q9RVI3), CLPB_DESVH  (Q72AW6), CLPB_DICNO  (P17422), 
CLPB_ECO57  (P63285), CLPB_ECOL6  (P63286), CLPB_ECOLI  (P63284), 
CLPB_ENTFA  (Q831Y7), CLPB_FUSNN  (Q8RHQ8), CLPB_GEOSL  (Q74FF1), 
CLPB_GLOVI  (Q7NFE9), CLPB_HAEDU  (Q7VNH1), CLPB_HAEIN  (P44403), 
CLPB_HELHP  (Q7VJY3), CLPB_HELPJ  (Q9ZMH1), CLPB_HELPY  (P71404), 
CLPB_LACLA  (Q9CFF3), CLPB_LACLM  (O68185), CLPB_LACPL  (Q88VX7), 
CLPB_LEPBY  (O87444), CLPB_LEPIC  (Q72QU2), CLPB_LEPIN  (Q8F509), 
CLPB_LISIN  (Q929G7), CLPB_LISM4  (G2K265), CLPB_LISMF  (Q71XF9), 
CLPB_LISMO  (Q8Y570), CLPB_MEIRU  (Q7X2S8), CLPB_MYCBO  (P63287), 
CLPB_MYCGA  (Q7NAZ3), CLPB_MYCGE  (P47597), CLPB_MYCLE  (Q9CB26), 
CLPB_MYCPA  (Q73T66), CLPB_MYCPE  (Q8EW28), CLPB_MYCPN  (P75247), 
CLPB_MYCTO  (P9WPD0), CLPB_MYCTU  (P9WPD1), CLPB_NEIMA  (Q9JTP9), 
CLPB_NEIMB  (Q9JYQ8), CLPB_NITEU  (Q82SD8), CLPB_OCEIH  (Q8EU05), 
CLPB_PARUW  (Q6MD97), CLPB_PASMU  (Q9CKC0), CLPB_PHOLL  (Q7N788), 
CLPB_PHOPR  (Q6LMY0), CLPB_PORGI  (Q7MVE7), CLPB_PROFC  (Q7WSY8), 
CLPB_PROMA  (Q7VBL0), CLPB_PROMM  (Q7V8B1), CLPB_PROMP  (Q7V2A3), 
CLPB_PSEAE  (Q9HVN5), CLPB_PSEPK  (Q88Q71), CLPB_PSESM  (Q889C2), 
CLPB_RALSO  (Q8XZR0), CLPB_RHILO  (Q98G96), CLPB_RHIME  (Q92MK7), 
CLPB_RHOBA  (Q7UM33), CLPB_RHOPA  (Q6N1H2), CLPB_RICBR  (Q1RGR1), 
CLPB_RICCN  (Q92JK8), CLPB_RICFE  (Q4UN57), CLPB_RICPR  (Q9ZEA9), 
CLPB_RICTY  (Q68XR2), CLPB_SALTI  (Q7AMH5), CLPB_SALTY  (Q7CQ01), 
CLPB_SHEON  (Q8EBE6), CLPB_SHIFL  (Q7UBW5), CLPB_STAAC  (Q5HHB0), 
CLPB_STAAM  (Q99VB5), CLPB_STAAN  (Q7A6G6), CLPB_STAAR  (Q6GIB2), 
CLPB_STAAS  (Q6GAV1), CLPB_STAAW  (Q8NXE7), CLPB_STAEQ  (Q5HQI5), 
CLPB_STAES  (Q8CPT5), CLPB_STRAL  (Q9Z6E4), CLPB_STRCO  (Q8CJV9), 
CLPB_STRMU  (Q8DTC7), CLPB_THET2  (Q72IK9), CLPB_THET8  (Q9RA63), 
CLPB_TREDE  (Q73K92), CLPB_TREPA  (O83110), CLPB_TROW8  (Q83N78), 
CLPB_TROWT  (Q83FI1), CLPB_VIBCH  (Q9KU18), CLPB_VIBPA  (Q87S63), 
CLPB_VIBVU  (Q8DEV2), CLPB_VIBVY  (Q7MNK1), CLPB_WOLPM  (Q73IE4), 
CLPB_WOLSU  (Q7M9X4), CLPB_XANAC  (Q8PHQ4), CLPB_XANCP  (Q8P6A0), 
CLPB_XYLFA  (Q9PGC1), CLPB_XYLFT  (Q87AX8), CLPB_YEREN  (Q9F746), 
CLPB_YERPE  (Q74X11), CLPC1_ARATH (Q9FI56), CLPC1_ORYSJ (Q7F9I1), 
CLPC2_ARATH (Q9SXJ7), CLPC2_ORYSJ (Q2QVG9), CLPC3_ORYSJ (Q53LY0), 
CLPC4_ORYSJ (Q53N47), CLPC_BACSU  (P37571), CLPC_CYACA  (Q9TM05), 
CLPC_GUITH  (O78410), CLPC_ODOSI  (P49574), CLPC_PEA    (P35100), 
CLPC_PORPU  (P51332), CLPC_PYRYE  (Q1XDF4), CLPC_STAA3  (Q2FJB5), 
CLPC_STAA8  (Q2G0P5), CLPC_STAAB  (Q2YSD6), CLPC_STAAC  (P0C281), 
CLPC_STAAM  (Q99W78), CLPC_STAAN  (Q7A797), CLPC_STAAR  (Q6GJE4), 
CLPC_STAAS  (Q6GBW3), CLPC_STAAW  (Q8NXY8), CLPC_STAEQ  (Q5HRM8), 
CLPC_STAES  (Q8CQ88), CLPC_STAHJ  (Q4L3I4), CLPC_STAS1  (Q49V34), 
CLPC_STRP6  (Q5XCL7), CLPD1_ORYSJ (Q6H795), CLPD2_ORYSJ (Q7XL03), 
CLPD_ARATH  (P42762), CLPE_BACSU  (O31673), CLPE_LACLA  (Q9CI09), 
CLPE_LACLM  (Q9S5Z2), CLPE_STRPN  (P35594), CLPL_LACLL  (Q06716), 
CLP_TRYBB   (P31543), HLYB_BRAHO  (Q54316), HS104_SCHPO (O94641), 
HS104_YEAST (P31539), HSP78_CANAL (Q96UX5), HSP78_SCHPO (O74402), 
HSP78_YEAST (P33416), HSP98_NEUCR (P31540)
» More

UniProtKB/Swiss-Prot
False negative sequences
13 sequences

ADPR_RHOER  (Q01357), CLPB2_ARATH (F4JVJ1), CLPB2_CHLTE (Q8KA87), 
CLPL_STAA3  (Q2FDV8), CLPL_STAA8  (Q2FV74), CLPL_STAAB  (Q2YWB1), 
CLPL_STAAC  (Q5HD02), CLPL_STAAM  (Q99R88), CLPL_STAAN  (Q7A3F4), 
CLPL_STAAR  (Q6GDQ0), CLPL_STAAS  (Q6G6C6), CLPL_STAAW  (Q8NUR7), 
CLPV1_PSEAE (Q9I742)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

CLPA_PINPS  (P81671), CLPA_POPEU  (P84565), CLPB_ACICA  (P82956), 
CLP_TRYCR   (O15885)
» More

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

CLPB3_ORYSJ (Q0E3C8)

		
PDB
[Detailed view]
12 PDB

1KSF; 1R6B; 3J3R; 3J3S; 3J3T; 3J3U; 4FCV; 4FCW; 4FD2; 4LJ5; 4LJ6; 4LJ7

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