Entry: PS00871
General information about the entry
Entry nameCLPAB_2
Accession numberPS00871
Entry typePATTERN
DateOCT-1993 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00679
Name and characterization of the entry
DescriptionChaperonins clpA/B signature 2.
Pattern[RGT]-[LIVMFY]-[DN]-x-[ST]-E-[LIVMFY]-x-[ED]-[KRQEAS]-x-[STA]-x-[STAD]- [KRS]-[LIVM]-x-G-[STAP].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 190 hits in 190 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 189 hits in 189 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 13
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 4
  • Precision (true hits / (true hits + false positives)): 99.47 %
  • Recall (true hits / (true hits + false negatives)): 93.56 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
CLPAA_SOLLC (P31541), CLPAB_SOLLC (P31542), CLPA_BRANA  (P46523), 
CLPA_ECO57  (P0ABI1), CLPA_ECOL6  (P0ABI0), CLPA_ECOLI  (P0ABH9), 
CLPA_RHOBL  (P05444), CLPB1_ARATH (P42730), CLPB1_CHLTE (Q8KG79), 
CLPB1_NOSS1 (Q8YUL9), CLPB1_ORYSJ (Q6F2Y7), CLPB1_STRAW (Q82EU9), 
CLPB1_SYNE7 (P53533), CLPB1_SYNPX (Q7U637), CLPB1_SYNY3 (P74459), 
CLPB1_THEEB (Q8DJ40), CLPB2_NOSS1 (Q8YM56), CLPB2_ORYSJ (Q75GT3), 
CLPB2_STRAW (Q826F2), CLPB2_SYNE7 (O34209), CLPB2_SYNPX (Q7U3T3), 
CLPB2_SYNY3 (P74361), CLPB2_THEEB (Q8DG71), CLPB3_ARATH (Q9LF37), 
CLPB4_ARATH (Q8VYJ7), CLPB_AGRT5  (Q7CU92), CLPB_AQUAE  (O67588), 
CLPB_BACAN  (Q81TT4), CLPB_BACC1  (Q73BY1), CLPB_BACCR  (Q81GM5), 
CLPB_BACTN  (Q89YY3), CLPB_BDEBA  (Q6MIV0), CLPB_BIFLO  (Q8G4X4), 
CLPB_BLOFL  (Q7VQF3), CLPB_BORBR  (Q7WHB6), CLPB_BORPA  (Q7W9E6), 
CLPB_BORPE  (Q7VYV6), CLPB_BRAJA  (Q89UL2), CLPB_BRUME  (Q8YJ91), 
CLPB_BRUSU  (Q7CEG6), CLPB_CAMJE  (Q9PI02), CLPB_CAUCR  (Q9A9T4), 
CLPB_CHLCV  (Q822Q4), CLPB_CHLMU  (Q9PKS5), CLPB_CHLPN  (Q7AJA9), 
CLPB_CHLTR  (O84115), CLPB_CHRVO  (Q7NWN7), CLPB_CLOAB  (Q97KG0), 
CLPB_CLOPE  (Q8XKG8), CLPB_CLOTE  (Q898C7), CLPB_CORDI  (Q6NF05), 
CLPB_COREF  (Q8FM94), CLPB_CORGL  (P53532), CLPB_COXBU  (Q83F55), 
CLPB_DEIRA  (Q9RVI3), CLPB_DESVH  (Q72AW6), CLPB_DICNO  (P17422), 
CLPB_ECO57  (P63285), CLPB_ECOL6  (P63286), CLPB_ECOLI  (P63284), 
CLPB_ENTFA  (Q831Y7), CLPB_FUSNN  (Q8RHQ8), CLPB_GEOSL  (Q74FF1), 
CLPB_GLOVI  (Q7NFE9), CLPB_HAEDU  (Q7VNH1), CLPB_HAEIN  (P44403), 
CLPB_HELHP  (Q7VJY3), CLPB_HELPJ  (Q9ZMH1), CLPB_HELPY  (P71404), 
CLPB_LACLA  (Q9CFF3), CLPB_LACLM  (O68185), CLPB_LACPL  (Q88VX7), 
CLPB_LEPIC  (Q72QU2), CLPB_LEPIN  (Q8F509), CLPB_LISIN  (Q929G7), 
CLPB_LISMF  (Q71XF9), CLPB_LISMO  (Q8Y570), CLPB_MEIRU  (Q7X2S8), 
CLPB_MYCBO  (P63287), CLPB_MYCGA  (Q7NAZ3), CLPB_MYCGE  (P47597), 
CLPB_MYCLE  (Q9CB26), CLPB_MYCPA  (Q73T66), CLPB_MYCPE  (Q8EW28), 
CLPB_MYCPN  (P75247), CLPB_MYCTU  (P63288), CLPB_NEIMA  (Q9JTP9), 
CLPB_NEIMB  (Q9JYQ8), CLPB_NITEU  (Q82SD8), CLPB_OCEIH  (Q8EU05), 
CLPB_PARUW  (Q6MD97), CLPB_PASMU  (Q9CKC0), CLPB_PHOLL  (Q7N788), 
CLPB_PHOPR  (Q6LMY0), CLPB_PLEBO  (O87444), CLPB_PORGI  (Q7MVE7), 
CLPB_PROFC  (Q7WSY8), CLPB_PROMA  (Q7VBL0), CLPB_PROMM  (Q7V8B1), 
CLPB_PROMP  (Q7V2A3), CLPB_PSEAE  (Q9HVN5), CLPB_PSEPK  (Q88Q71), 
CLPB_PSESM  (Q889C2), CLPB_RALSO  (Q8XZR0), CLPB_RHILO  (Q98G96), 
CLPB_RHIME  (Q92MK7), CLPB_RHOBA  (Q7UM33), CLPB_RHOPA  (Q6N1H2), 
CLPB_RICBR  (Q1RGR1), CLPB_RICCN  (Q92JK8), CLPB_RICFE  (Q4UN57), 
CLPB_RICPR  (Q9ZEA9), CLPB_RICTY  (Q68XR2), CLPB_SALTI  (Q7AMH5), 
CLPB_SALTY  (Q7CQ01), CLPB_SHEON  (Q8EBE6), CLPB_SHIFL  (Q7UBW5), 
CLPB_STAAC  (Q5HHB0), CLPB_STAAM  (Q99VB5), CLPB_STAAN  (Q7A6G6), 
CLPB_STAAR  (Q6GIB2), CLPB_STAAS  (Q6GAV1), CLPB_STAAW  (Q8NXE7), 
CLPB_STAEQ  (Q5HQI5), CLPB_STAES  (Q8CPT5), CLPB_STRAL  (Q9Z6E4), 
CLPB_STRCO  (Q8CJV9), CLPB_STRMU  (Q8DTC7), CLPB_THET2  (Q72IK9), 
CLPB_THET8  (Q9RA63), CLPB_TREDE  (Q73K92), CLPB_TREPA  (O83110), 
CLPB_TROW8  (Q83N78), CLPB_TROWT  (Q83FI1), CLPB_VIBCH  (Q9KU18), 
CLPB_VIBPA  (Q87S63), CLPB_VIBVU  (Q8DEV2), CLPB_VIBVY  (Q7MNK1), 
CLPB_WOLPM  (Q73IE4), CLPB_WOLSU  (Q7M9X4), CLPB_XANAC  (Q8PHQ4), 
CLPB_XANCP  (Q8P6A0), CLPB_XYLFA  (Q9PGC1), CLPB_XYLFT  (Q87AX8), 
CLPB_YEREN  (Q9F746), CLPB_YERPE  (Q74X11), CLPC1_ARATH (Q9FI56), 
CLPC1_ORYSJ (Q7F9I1), CLPC2_ARATH (Q9SXJ7), CLPC2_ORYSJ (Q2QVG9), 
CLPC3_ORYSJ (Q53LY0), CLPC4_ORYSJ (Q53N47), CLPC_BACSU  (P37571), 
CLPC_CYACA  (Q9TM05), CLPC_GUITH  (O78410), CLPC_ODOSI  (P49574), 
CLPC_PEA    (P35100), CLPC_PORPU  (P51332), CLPC_PORYE  (Q1XDF4), 
CLPC_STAA3  (Q2FJB5), CLPC_STAA8  (Q2G0P5), CLPC_STAAB  (Q2YSD6), 
CLPC_STAAC  (P0C281), CLPC_STAAM  (Q99W78), CLPC_STAAN  (Q7A797), 
CLPC_STAAR  (Q6GJE4), CLPC_STAAS  (Q6GBW3), CLPC_STAAW  (Q8NXY8), 
CLPC_STAEQ  (Q5HRM8), CLPC_STAES  (Q8CQ88), CLPC_STAHJ  (Q4L3I4), 
CLPC_STAS1  (Q49V34), CLPC_STRP6  (Q5XCL7), CLPD1_ORYSJ (Q6H795), 
CLPD2_ORYSJ (Q7XL03), CLPD_ARATH  (P42762), CLPE_BACSU  (O31673), 
CLPE_LACLA  (Q9CI09), CLPE_LACLM  (Q9S5Z2), CLPE_STRPN  (P35594), 
CLPL_LACLL  (Q06716), CLP_TRYBB   (P31543), HLYB_TREHY  (Q54316), 
HS104_SCHPO (O94641), HS104_YEAST (P31539), HSP78_CANAL (Q96UX5), 
HSP78_SCHPO (O74402), HSP78_YEAST (P33416), HSP98_NEUCR (P31540)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ADPR_RHOER  (Q01357), CLPB2_ARATH (F4JVJ1), CLPB2_CHLTE (Q8KA87), 
CLPL_STAA3  (Q2FDV8), CLPL_STAA8  (Q2FV74), CLPL_STAAB  (Q2YWB1), 
CLPL_STAAC  (Q5HD02), CLPL_STAAM  (Q99R88), CLPL_STAAN  (Q7A3F4), 
CLPL_STAAR  (Q6GDQ0), CLPL_STAAS  (Q6G6C6), CLPL_STAAW  (Q8NUR7), 
CLPV1_PSEAE (Q9I742)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CLPA_PINPS  (P81671), CLPA_POPEU  (P84565), CLPB_ACICA  (P82956), 
CLP_TRYCR   (O15885)
False positive hits (sequences which do not belong to the set under consideration):
CLPB3_ORYSJ (Q0E3C8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1KSF; 1R6B;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission


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