Entry: PS00888

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General information about the entry

Entry name [info] CNMP_BINDING_1
Accession [info] PS00888
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00691

Name and characterization of the entry

Description [info] Cyclic nucleotide-binding domain signature 1.
Pattern [info]
[LIVM]-[VIC]-x-{H}-G-[DENQTA]-x-[GAC]-{L}-x-[LIVMFY](4)-x(2)-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 165 in 118 different sequences
Number of true positive hits 156 in 109 different sequences
Number of 'unknown' hits
Number of false positive hits 9 in 9 different sequences
Number of false negative sequences 175
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 94.55 %
Recall (true positives / (true positives + false negatives)) 47.13 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
109 sequences

CNBD2_HUMAN (Q96M20), CNBD2_MACFA (Q95JR6), CNBD2_MOUSE (Q9D5U8), 
CNG1_CHICK  (Q90805), CNG3_CHICK  (Q90980), CNGA1_BOVIN (Q00194), 
CNGA1_CANFA (Q28279), CNGA1_HUMAN (P29973), CNGA1_MOUSE (P29974), 
CNGA1_RAT   (Q62927), CNGA2_BOVIN (Q03041), CNGA2_HUMAN (Q16280), 
CNGA2_MOUSE (Q62398), CNGA2_RABIT (Q28718), CNGA2_RAT   (Q00195), 
CNGA3_BOVIN (Q29441), CNGA3_HUMAN (Q16281), CNGA3_MOUSE (Q9JJZ8), 
CNGA4_HUMAN (Q8IV77), CNGA4_MOUSE (Q3UW12), CNGA4_RAT   (Q64359), 
CNGA_DROME  (Q24278), CNGB1_BOVIN (Q28181), CNGB1_HUMAN (Q14028), 
CNGB3_CANFA (Q8MJD7), CNGB3_HUMAN (Q9NQW8), CNGB3_MOUSE (Q9JJZ9), 
CNGK1_RHIEC (Q2K5E1), CNGK1_RHILO (Q98GN8), CNG_CAEEL   (Q03611), 
CNG_ICTPU   (P55934), CRP_ECO57   (P0ACK0), CRP_ECOL6   (P0ACJ9), 
CRP_ECOLI   (P0ACJ8), CRP_ENTAE   (P0A2T7), CRP_HAEIN   (P29281), 
CRP_PASMU   (O05689), CRP_SALTY   (P0A2T6), CRP_SHIFL   (P0ACK1), 
EGL4_CAEBR  (A8X6H1), EGL4_CAEEL  (O76360), GLSA2_BRADU (Q89KV2), 
HCN1_HUMAN  (O60741), HCN1_MOUSE  (O88704), HCN1_RABIT  (Q9MZS1), 
HCN1_RAT    (Q9JKB0), HCN2_HUMAN  (Q9UL51), HCN2_MOUSE  (O88703), 
HCN2_RAT    (Q9JKA9), HCN4_HUMAN  (Q9Y3Q4), HCN4_MOUSE  (O70507), 
HCN4_RABIT  (Q9TV66), HCN4_RAT    (Q9JKA7), KAP0_BOVIN  (P00514), 
KAP0_CHICK  (Q5ZM91), KAP0_HUMAN  (P10644), KAP0_MESAU  (P86244), 
KAP0_MOUSE  (Q9DBC7), KAP0_PIG    (P07802), KAP0_PONAB  (Q5REL1), 
KAP0_RAT    (P09456), KAP1_HUMAN  (P31321), KAP1_MOUSE  (P12849), 
KAP1_RAT    (P81377), KAP2_BOVIN  (P00515), KAP2_HUMAN  (P13861), 
KAP2_MOUSE  (P12367), KAP2_RAT    (P12368), KAP3_BOVIN  (P31322), 
KAP3_HUMAN  (P31323), KAP3_MOUSE  (P31324), KAP3_RAT    (P12369), 
KAPR1_DROME (P16905), KAPR2_DROME (P81900), KAPR_APLCA  (P31319), 
KAPR_ASHGO  (Q75AM2), KAPR_ASPFU  (Q96UX3), KAPR_ASPNG  (Q9C196), 
KAPR_BLAEM  (P31320), KAPR_BLUGR  (Q9HEP7), KAPR_CAEEL  (P30625), 
KAPR_CANAL  (Q9HEW1), KAPR_CANGA  (Q6FQL6), KAPR_COLOR  (Q9C1C2), 
KAPR_COLTR  (O42794), KAPR_DEBHA  (Q6BZG7), KAPR_DICDI  (P05987), 
KAPR_EMENI  (O59922), KAPR_HYPAT  (Q86ZN7), KAPR_KLULA  (Q6CPK7), 
KAPR_MAGO7  (O14448), KAPR_MUCCL  (Q8TF77), KAPR_NEUCR  (Q01386), 
KAPR_SCHPO  (P36600), KAPR_STRPU  (Q26619), KAPR_USTMA  (P49605), 
KAPR_YARLI  (Q6C2X0), KAPR_YEAST  (P07278), KGP1_BOVIN  (P00516), 
KGP1_DROME  (Q03042), KGP1_HUMAN  (Q13976), KGP1_MOUSE  (P0C605), 
KGP24_DROME (Q03043), KGP25_DROME (P32023), KGP2_HUMAN  (Q13237), 
KGP2_MOUSE  (Q61410), KGP2_RAT    (Q64595), NTE1_SCHPO  (Q9USJ4), 
VFR_PSEAE   (P55222)
» More

UniProtKB/Swiss-Prot
False negative sequences
175 sequences

AKT1_ARATH  (Q38998), AKT1_ORYSI  (P0C550), AKT1_ORYSJ  (Q0JKV1), 
AKT2_ARATH  (Q38898), AKT2_ORYSJ  (Q75HP9), AKT3_ORYSJ  (Q8H569), 
AKT5_ARATH  (Q9SCX5), AKT6_ARATH  (Q8GXE6), ANR_PSEFL   (O85222), 
ARCR_STAA1  (A7X715), ARCR_STAA2  (A6U515), ARCR_STAA3  (Q2FDM8), 
ARCR_STAA8  (Q2FUY1), ARCR_STAA9  (A5IW58), ARCR_STAAB  (Q2YWH5), 
ARCR_STAAC  (Q5HCR6), ARCR_STAAE  (A6QKC0), ARCR_STAAM  (Q99R06), 
ARCR_STAAN  (Q7A381), ARCR_STAAR  (Q6GDH1), ARCR_STAAS  (Q6G643), 
ARCR_STAAT  (A8Z5D0), ARCR_STAAW  (Q8NUK9), ARCR_STAEQ  (Q5HKU6), 
ARCR_STAES  (Q8CML2), ARCR_STAHJ  (Q4L9J7), CLP_XANAC   (Q8PQ45), 
CLP_XANC5   (Q3BYB3), CLP_XANC8   (Q4UZF6), CLP_XANCB   (B0RN01), 
CLP_XANCP   (P22260), CLP_XANOM   (Q2NYD9), CLP_XANOP   (B2SL05), 
CLP_XANOR   (Q5GV61), CMR_MYCTO   (P9WMH4), CMR_MYCTU   (P9WMH5), 
CNBD1_HUMAN (Q8NA66), CNG10_ARATH (Q9LNJ0), CNG11_ARATH (Q9SKD6), 
CNG12_ARATH (Q8GWD2), CNG13_ARATH (Q9LD40), CNG14_ARATH (Q9SJA4), 
CNG15_ARATH (Q9SL29), CNG16_ARATH (Q9SU64), CNG17_ARATH (Q8L7Z0), 
CNG18_ARATH (Q9LEQ3), CNG19_ARATH (Q9LDR2), CNG20_ARATH (Q9LD37), 
CNGC1_ARATH (O65717), CNGC2_ARATH (O65718), CNGC3_ARATH (Q9SKD7), 
CNGC4_ARATH (Q94AS9), CNGC5_ARATH (Q8RWS9), CNGC6_ARATH (O82226), 
CNGC7_ARATH (Q9S9N5), CNGC8_ARATH (Q9FXH6), CNGC9_ARATH (Q9M0A4), 
CRP_MYCTO   (P9WMH2), CRP_MYCTU   (P9WMH3), GBPC_DICDI  (Q8MVR1), 
GBPD_DICDI  (Q54S40), GORK_ARATH  (Q94A76), HCN3_HUMAN  (Q9P1Z3), 
HCN3_MOUSE  (O88705), HCN3_RAT    (Q9JKA8), KAT1_ARATH  (Q39128), 
KAT1_ORYSJ  (Q6K3T2), KAT2_ARATH  (Q38849), KAT2_ORYSJ  (Q5QNI1), 
KAT3_ARATH  (P92960), KAT3_ORYSJ  (Q5JM04), KAT4_ORYSJ  (Q652U9), 
KAT5_ORYSJ  (Q7XT08), KAT6_ORYSJ  (A2ZX97), KCNAE_DROME (Q02280), 
KCNH1_BOVIN (O18965), KCNH1_HUMAN (O95259), KCNH1_MOUSE (Q60603), 
KCNH1_RAT   (Q63472), KCNH2_CANFA (Q9TSZ3), KCNH2_CHICK (Q9PT84), 
KCNH2_HUMAN (Q12809), KCNH2_MOUSE (O35219), KCNH2_RABIT (Q8WNY2), 
KCNH2_RAT   (O08962), KCNH3_HUMAN (Q9ULD8), KCNH3_MOUSE (Q9WVJ0), 
KCNH3_RAT   (O89047), KCNH4_HUMAN (Q9UQ05), KCNH4_RAT   (Q9R1T9), 
KCNH5_HUMAN (Q8NCM2), KCNH5_MOUSE (Q920E3), KCNH5_RAT   (Q9EPI9), 
KCNH6_HUMAN (Q9H252), KCNH6_RAT   (O54853), KCNH7_HUMAN (Q9NS40), 
KCNH7_MOUSE (Q9ER47), KCNH7_RAT   (O54852), KCNH8_HUMAN (Q96L42), 
KCNH8_MOUSE (P59111), KCNH8_RAT   (Q9QWS8), KGP1_RABIT  (O77676), 
KOR1_ORYSJ  (Q653P0), KOR2_ORYSJ  (Q7XUW4), NTE1_ASHGO  (Q756Z0), 
NTE1_ASPCL  (A1C9L6), NTE1_ASPFU  (Q4WA15), NTE1_ASPNC  (A2R350), 
NTE1_ASPOR  (Q2UDH2), NTE1_ASPTN  (Q0CNC7), NTE1_CANAL  (Q5A368), 
NTE1_CANGA  (Q6FKJ1), NTE1_CHAGB  (Q2H0D3), NTE1_COCIM  (Q1DLC7), 
NTE1_CRYNB  (P0CP37), NTE1_CRYNJ  (P0CP36), NTE1_DEBHA  (Q6BQK9), 
NTE1_EMENI  (Q5BAE9), NTE1_KLULA  (Q6CWC2), NTE1_LODEL  (A5E708), 
NTE1_MAGO7  (A4QVZ8), NTE1_NEOFI  (A1D9Y2), NTE1_NEUCR  (Q7S8J1), 
NTE1_PHANO  (Q0UJ42), NTE1_PICGU  (A5DHA3), NTE1_PICST  (A3LYZ4), 
NTE1_USTMA  (Q4PF83), NTE1_YARLI  (Q6CF18), NTE1_YEAST  (Q04958), 
P2C19_ARATH (Q9SL76), PAT_MYCS2   (A0R3F9), PAT_MYCTU   (O05581), 
PDE5_DICDI  (Q8MLZ3), PDE6_DICDI  (Q8MM62), PLPL6_HUMAN (Q8IY17), 
PLPL6_MOUSE (Q3TRM4), PLPL6_PONAB (Q5RDS0), PLPL7_HUMAN (Q6ZV29), 
PLPL7_MOUSE (A2AJ88), PLPL7_RAT   (Q5BK26), RPGF1_CAEEL (P34578), 
RPGF2_BOVIN (F1MSG6), RPGF2_CANFA (F1PBJ0), RPGF2_HUMAN (Q9Y4G8), 
RPGF2_MOUSE (Q8CHG7), RPGF2_RAT   (F1M386), RPGF3_HUMAN (O95398), 
RPGF3_MOUSE (Q8VCC8), RPGF3_RAT   (Q9Z1C8), RPGF4_HUMAN (Q8WZA2), 
RPGF4_MOUSE (Q9EQZ6), RPGF_CAEEL  (G5EDB9), SKOR_ARATH  (Q9M8S6), 
SL9C1_HUMAN (Q4G0N8), SL9C1_MOUSE (Q6UJY2), SL9C2_HUMAN (Q5TAH2), 
SWS_DROAN   (B3MRI9), SWS_DROER   (B3NY03), SWS_DROGR   (B4JLX2), 
SWS_DROME   (Q9U969), SWS_DROMO   (B4L535), SWS_DROPE   (B4H3U8), 
SWS_DROPS   (B5DKS8), SWS_DROSE   (B4IL64), SWS_DROVI   (B4M709), 
SWS_DROWI   (B4N1W9), SWS_DROYA   (B4Q0P3), Y073_MYCTO  (P9WQK4), 
Y073_MYCTU  (P9WQK5), Y2565_MYCTO (P9WIY6), Y2565_MYCTU (P9WIY7), 
Y2594_MYCBO (P0A643), Y4233_RHOPA (Q02006), YOL4_CAEEL  (Q02331), 
YVL7_CAEEL  (Q21534)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

KAP2_PIG    (P05207)

		
UniProtKB/Swiss-Prot
False positive sequences
9 sequences

ALG11_HUMAN (Q2TAA5), ALG11_PONAB (Q5R7Z6), CARA_SULTO  (Q970U8), 
CBIMQ_METLZ (A2SSD6), DAPB_MAGO7  (A4QYQ5), SFSA_GEOMG  (Q39WK9), 
SFSA_GEOSL  (P61664), SFSA_TRIEI  (Q111B4), SYT15_HUMAN (Q9BQS2)
» More

PDB
[Detailed view]
89 PDB

1CGP; 1CX4; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1NE4; 1NE6; 1O3Q; 1O3R; 1O3S; 1O3T; 1Q3E; 1RGS; 1RL3; 1RUN; 1RUO; 1U12; 1VP6; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2CGP; 2GZW; 2K0G; 2KXL; 2OZ6; 2Q0A; 2QCS; 2QVS; 2WC2; 3BPZ; 3CL1; 3CLP; 3CO2; 3ETQ; 3FFQ; 3FHI; 3FWE; 3HIF; 3IDB; 3IDC; 3IIA; 3IYD; 3J4Q; 3J4R; 3KCC; 3N4M; 3OCP; 3OD0; 3OF1; 3OGJ; 3OTF; 3PLQ; 3PNA; 3PVB; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 3SHR; 3TNP; 3TNQ; 3U0Z; 3U10; 3U11; 4BH9; 4BHP; 4CHV; 4CHW; 4DIN; 4FT8; 4HBN; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B; 4JV4; 4JVA; 4KU7; 4KU8; 4MX3
» More

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