Entry: PS00888

General information about the entry

Entry name [info] CNMP_BINDING_1
Accession [info] PS00888
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00691

Name and characterization of the entry

Description [info] Cyclic nucleotide-binding domain signature 1.
Pattern [info]
[LIVM]-[VIC]-x-{H}-G-[DENQTA]-x-[GAC]-{L}-x-[LIVMFY](4)-x(2)-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 165 in 118 different sequences
Number of true positive hits 156 in 109 different sequences
Number of 'unknown' hits 0
Number of false positive hits 9 in 9 different sequences
Number of false negative sequences 176
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 94.55 %
Recall (true positives / (true positives + false negatives)) 46.99 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
109 sequences

CNBD2_HUMAN (Q96M20), CNBD2_MACFA (Q95JR6), CNBD2_MOUSE (Q9D5U8), 
CNG1_CHICK  (Q90805), CNG3_CHICK  (Q90980), CNGA1_BOVIN (Q00194), 
CNGA1_CANFA (Q28279), CNGA1_HUMAN (P29973), CNGA1_MOUSE (P29974), 
CNGA1_RAT   (Q62927), CNGA2_BOVIN (Q03041), CNGA2_HUMAN (Q16280), 
CNGA2_MOUSE (Q62398), CNGA2_RABIT (Q28718), CNGA2_RAT   (Q00195), 
CNGA3_BOVIN (Q29441), CNGA3_HUMAN (Q16281), CNGA3_MOUSE (Q9JJZ8), 
CNGA4_HUMAN (Q8IV77), CNGA4_MOUSE (Q3UW12), CNGA4_RAT   (Q64359), 
CNGA_DROME  (Q24278), CNGB1_BOVIN (Q28181), CNGB1_HUMAN (Q14028), 
CNGB3_CANFA (Q8MJD7), CNGB3_HUMAN (Q9NQW8), CNGB3_MOUSE (Q9JJZ9), 
CNGK1_RHIEC (Q2K5E1), CNGK1_RHILO (Q98GN8), CNG_CAEEL   (Q03611), 
CNG_ICTPU   (P55934), CRP_ECO57   (P0ACK0), CRP_ECOL6   (P0ACJ9), 
CRP_ECOLI   (P0ACJ8), CRP_ENTAE   (P0A2T7), CRP_HAEIN   (P29281), 
CRP_PASMU   (O05689), CRP_SALTY   (P0A2T6), CRP_SHIFL   (P0ACK1), 
EGL4_CAEBR  (A8X6H1), EGL4_CAEEL  (O76360), GLSA2_BRADU (Q89KV2), 
HCN1_HUMAN  (O60741), HCN1_MOUSE  (O88704), HCN1_RABIT  (Q9MZS1), 
HCN1_RAT    (Q9JKB0), HCN2_HUMAN  (Q9UL51), HCN2_MOUSE  (O88703), 
HCN2_RAT    (Q9JKA9), HCN4_HUMAN  (Q9Y3Q4), HCN4_MOUSE  (O70507), 
HCN4_RABIT  (Q9TV66), HCN4_RAT    (Q9JKA7), KAP0_BOVIN  (P00514), 
KAP0_CHICK  (Q5ZM91), KAP0_HUMAN  (P10644), KAP0_MESAU  (P86244), 
KAP0_MOUSE  (Q9DBC7), KAP0_PIG    (P07802), KAP0_PONAB  (Q5REL1), 
KAP0_RAT    (P09456), KAP1_HUMAN  (P31321), KAP1_MOUSE  (P12849), 
KAP1_RAT    (P81377), KAP2_BOVIN  (P00515), KAP2_HUMAN  (P13861), 
KAP2_MOUSE  (P12367), KAP2_RAT    (P12368), KAP3_BOVIN  (P31322), 
KAP3_HUMAN  (P31323), KAP3_MOUSE  (P31324), KAP3_RAT    (P12369), 
KAPR1_DROME (P16905), KAPR2_DROME (P81900), KAPR_APLCA  (P31319), 
KAPR_ASHGO  (Q75AM2), KAPR_ASPFU  (Q96UX3), KAPR_ASPNG  (Q9C196), 
KAPR_BLAEM  (P31320), KAPR_BLUGR  (Q9HEP7), KAPR_CAEEL  (P30625), 
KAPR_CANAL  (Q9HEW1), KAPR_CANGA  (Q6FQL6), KAPR_COLOR  (Q9C1C2), 
KAPR_COLTR  (O42794), KAPR_DEBHA  (Q6BZG7), KAPR_DICDI  (P05987), 
KAPR_EMENI  (O59922), KAPR_HYPAT  (Q86ZN7), KAPR_KLULA  (Q6CPK7), 
KAPR_MAGO7  (O14448), KAPR_MUCCL  (Q8TF77), KAPR_NEUCR  (Q01386), 
KAPR_SCHPO  (P36600), KAPR_STRPU  (Q26619), KAPR_USTMA  (P49605), 
KAPR_YARLI  (Q6C2X0), KAPR_YEAST  (P07278), KGP1_BOVIN  (P00516), 
KGP1_DROME  (Q03042), KGP1_HUMAN  (Q13976), KGP1_MOUSE  (P0C605), 
KGP24_DROME (Q03043), KGP25_DROME (P32023), KGP2_HUMAN  (Q13237), 
KGP2_MOUSE  (Q61410), KGP2_RAT    (Q64595), NTE1_SCHPO  (Q9USJ4), 
VFR_PSEAE   (P55222)
» More

UniProtKB/Swiss-Prot
False negative sequences
176 sequences

AKT1_ARATH  (Q38998), AKT1_ORYSI  (P0C550), AKT1_ORYSJ  (Q0JKV1), 
AKT2_ARATH  (Q38898), AKT2_ORYSJ  (Q75HP9), AKT3_ORYSJ  (Q8H569), 
AKT5_ARATH  (Q9SCX5), AKT6_ARATH  (Q8GXE6), ANR_PSEPH   (O85222), 
ARCR_STAA1  (A7X715), ARCR_STAA2  (A6U515), ARCR_STAA3  (Q2FDM8), 
ARCR_STAA8  (Q2FUY1), ARCR_STAA9  (A5IW58), ARCR_STAAB  (Q2YWH5), 
ARCR_STAAC  (Q5HCR6), ARCR_STAAE  (A6QKC0), ARCR_STAAM  (Q99R06), 
ARCR_STAAN  (Q7A381), ARCR_STAAR  (Q6GDH1), ARCR_STAAS  (Q6G643), 
ARCR_STAAT  (A8Z5D0), ARCR_STAAW  (Q8NUK9), ARCR_STAEQ  (Q5HKU6), 
ARCR_STAES  (Q8CML2), ARCR_STAHJ  (Q4L9J7), CLP_XANAC   (Q8PQ45), 
CLP_XANC5   (Q3BYB3), CLP_XANC8   (Q4UZF6), CLP_XANCB   (B0RN01), 
CLP_XANCP   (P22260), CLP_XANOM   (Q2NYD9), CLP_XANOP   (B2SL05), 
CLP_XANOR   (Q5GV61), CMR_MYCTO   (P9WMH4), CMR_MYCTU   (P9WMH5), 
CNBD1_HUMAN (Q8NA66), CNG10_ARATH (Q9LNJ0), CNG11_ARATH (Q9SKD6), 
CNG12_ARATH (Q8GWD2), CNG13_ARATH (Q9LD40), CNG14_ARATH (Q9SJA4), 
CNG15_ARATH (Q9SL29), CNG16_ARATH (Q9SU64), CNG17_ARATH (Q8L7Z0), 
CNG18_ARATH (Q9LEQ3), CNG19_ARATH (Q9LDR2), CNG20_ARATH (Q9LD37), 
CNGC1_ARATH (O65717), CNGC2_ARATH (O65718), CNGC3_ARATH (Q9SKD7), 
CNGC4_ARATH (Q94AS9), CNGC5_ARATH (Q8RWS9), CNGC6_ARATH (O82226), 
CNGC7_ARATH (Q9S9N5), CNGC8_ARATH (Q9FXH6), CNGC9_ARATH (Q9M0A4), 
CRPL_CORGL  (Q79VI7), CRPL_MYCTO  (P9WMH2), CRPL_MYCTU  (P9WMH3), 
GBPC_DICDI  (Q8MVR1), GBPD_DICDI  (Q54S40), GORK_ARATH  (Q94A76), 
HCN3_HUMAN  (Q9P1Z3), HCN3_MOUSE  (O88705), HCN3_RAT    (Q9JKA8), 
KAT1_ARATH  (Q39128), KAT1_ORYSJ  (Q6K3T2), KAT2_ARATH  (Q38849), 
KAT2_ORYSJ  (Q5QNI1), KAT3_ARATH  (P92960), KAT3_ORYSJ  (Q5JM04), 
KAT4_ORYSJ  (Q652U9), KAT5_ORYSJ  (Q7XT08), KAT6_ORYSJ  (A2ZX97), 
KCNAE_DROME (Q02280), KCNH1_BOVIN (O18965), KCNH1_HUMAN (O95259), 
KCNH1_MOUSE (Q60603), KCNH1_RAT   (Q63472), KCNH2_CANFA (Q9TSZ3), 
KCNH2_CHICK (Q9PT84), KCNH2_HUMAN (Q12809), KCNH2_MOUSE (O35219), 
KCNH2_RABIT (Q8WNY2), KCNH2_RAT   (O08962), KCNH3_HUMAN (Q9ULD8), 
KCNH3_MOUSE (Q9WVJ0), KCNH3_RAT   (O89047), KCNH4_HUMAN (Q9UQ05), 
KCNH4_RAT   (Q9R1T9), KCNH5_HUMAN (Q8NCM2), KCNH5_MOUSE (Q920E3), 
KCNH5_RAT   (Q9EPI9), KCNH6_HUMAN (Q9H252), KCNH6_RAT   (O54853), 
KCNH7_HUMAN (Q9NS40), KCNH7_MOUSE (Q9ER47), KCNH7_RAT   (O54852), 
KCNH8_HUMAN (Q96L42), KCNH8_MOUSE (P59111), KCNH8_RAT   (Q9QWS8), 
KGP1_RABIT  (O77676), KOR1_ORYSJ  (Q653P0), KOR2_ORYSJ  (Q7XUW4), 
NTE1_ASHGO  (Q756Z0), NTE1_ASPCL  (A1C9L6), NTE1_ASPFU  (Q4WA15), 
NTE1_ASPNC  (A2R350), NTE1_ASPOR  (Q2UDH2), NTE1_ASPTN  (Q0CNC7), 
NTE1_CANAL  (Q5A368), NTE1_CANGA  (Q6FKJ1), NTE1_CHAGB  (Q2H0D3), 
NTE1_COCIM  (Q1DLC7), NTE1_CRYNB  (P0CP37), NTE1_CRYNJ  (P0CP36), 
NTE1_DEBHA  (Q6BQK9), NTE1_EMENI  (Q5BAE9), NTE1_KLULA  (Q6CWC2), 
NTE1_LODEL  (A5E708), NTE1_MAGO7  (A4QVZ8), NTE1_NEOFI  (A1D9Y2), 
NTE1_NEUCR  (Q7S8J1), NTE1_PHANO  (Q0UJ42), NTE1_PICGU  (A5DHA3), 
NTE1_PICST  (A3LYZ4), NTE1_USTMA  (Q4PF83), NTE1_YARLI  (Q6CF18), 
NTE1_YEAST  (Q04958), P2C19_ARATH (Q9SL76), PAT_MYCS2   (A0R3F9), 
PAT_MYCTU   (O05581), PDE5_DICDI  (Q8MLZ3), PDE6_DICDI  (Q8MM62), 
PLPL6_HUMAN (Q8IY17), PLPL6_MOUSE (Q3TRM4), PLPL6_PONAB (Q5RDS0), 
PLPL7_HUMAN (Q6ZV29), PLPL7_MOUSE (A2AJ88), PLPL7_RAT   (Q5BK26), 
RPGF1_CAEEL (P34578), RPGF2_BOVIN (F1MSG6), RPGF2_CANFA (F1PBJ0), 
RPGF2_HUMAN (Q9Y4G8), RPGF2_MOUSE (Q8CHG7), RPGF2_RAT   (F1M386), 
RPGF3_HUMAN (O95398), RPGF3_MOUSE (Q8VCC8), RPGF3_RAT   (Q9Z1C8), 
RPGF4_HUMAN (Q8WZA2), RPGF4_MOUSE (Q9EQZ6), RPGF_CAEEL  (G5EDB9), 
SKOR_ARATH  (Q9M8S6), SL9C1_HUMAN (Q4G0N8), SL9C1_MOUSE (Q6UJY2), 
SL9C2_HUMAN (Q5TAH2), SWS_DROAN   (B3MRI9), SWS_DROER   (B3NY03), 
SWS_DROGR   (B4JLX2), SWS_DROME   (Q9U969), SWS_DROMO   (B4L535), 
SWS_DROPE   (B4H3U8), SWS_DROPS   (B5DKS8), SWS_DROSE   (B4IL64), 
SWS_DROVI   (B4M709), SWS_DROWI   (B4N1W9), SWS_DROYA   (B4Q0P3), 
Y073_MYCTO  (P9WQK4), Y073_MYCTU  (P9WQK5), Y2565_MYCTO (P9WIY6), 
Y2565_MYCTU (P9WIY7), Y2594_MYCBO (P0A643), Y4233_RHOPA (Q02006), 
YOL4_CAEEL  (Q02331), YVL7_CAEEL  (Q21534)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

KAP2_PIG    (P05207)

		
UniProtKB/Swiss-Prot
False positive sequences
9 sequences

ALG11_HUMAN (Q2TAA5), ALG11_PONAB (Q5R7Z6), CARA_SULTO  (Q970U8), 
CBIMQ_METLZ (A2SSD6), DAPB_MAGO7  (A4QYQ5), SFSA_GEOMG  (Q39WK9), 
SFSA_GEOSL  (P61664), SFSA_TRIEI  (Q111B4), SYT15_HUMAN (Q9BQS2)
» More

PDB
[Detailed view]
96 PDB

1CGP; 1CX4; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1NE4; 1NE6; 1O3Q; 1O3R; 1O3S; 1O3T; 1Q3E; 1RGS; 1RL3; 1RUN; 1RUO; 1U12; 1VP6; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2CGP; 2GZW; 2K0G; 2KXL; 2MNG; 2MPF; 2OZ6; 2Q0A; 2QCS; 2QVS; 2WC2; 3BPZ; 3CL1; 3CLP; 3CO2; 3ETQ; 3FFQ; 3FHI; 3FWE; 3HIF; 3IDB; 3IDC; 3IIA; 3IYD; 3J4Q; 3J4R; 3KCC; 3N4M; 3OCP; 3OD0; 3OF1; 3OGJ; 3OTF; 3PLQ; 3PNA; 3PVB; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 3SHR; 3TNP; 3TNQ; 3U0Z; 3U10; 3U11; 4BH9; 4BHP; 4CHV; 4CHW; 4DIN; 4FT8; 4HBN; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B; 4JV4; 4JVA; 4KL1; 4KU7; 4KU8; 4MUV; 4MX3; 4NVP; 4QX5; 4QXK
» More

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