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Entry: PS00888

General information about the entry

Entry name [info] CNMP_BINDING_1
Accession [info] PS00888
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED; 01-DEC-2004 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00691

Name and characterization of the entry

Description [info] Cyclic nucleotide-binding domain signature 1.
Pattern [info]
[LIVM]-[VIC]-x-{H}-G-[DENQTA]-x-[GAC]-{L}-x-[LIVMFY](4)-x(2)-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 165 in 118 different sequences
Number of true positive hits 156 in 109 different sequences
Number of 'unknown' hits 0
Number of false positive hits 9 in 9 different sequences
Number of false negative sequences 182
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 94.55 %
Recall (true positives / (true positives + false negatives)) 46.15 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
109 sequences

CNBD2_HUMAN (Q96M20    ), CNBD2_MACFA (Q95JR6    ), CNBD2_MOUSE (Q9D5U8    ), 
CNG1_CHICK  (Q90805    ), CNG3_CHICK  (Q90980    ), CNGA1_BOVIN (Q00194    ), 
CNGA1_CANLF (Q28279    ), CNGA1_HUMAN (P29973    ), CNGA1_MOUSE (P29974    ), 
CNGA1_RAT   (Q62927    ), CNGA2_BOVIN (Q03041    ), CNGA2_HUMAN (Q16280    ), 
CNGA2_MOUSE (Q62398    ), CNGA2_RABIT (Q28718    ), CNGA2_RAT   (Q00195    ), 
CNGA3_BOVIN (Q29441    ), CNGA3_HUMAN (Q16281    ), CNGA3_MOUSE (Q9JJZ8    ), 
CNGA4_HUMAN (Q8IV77    ), CNGA4_MOUSE (Q3UW12    ), CNGA4_RAT   (Q64359    ), 
CNGA_DROME  (Q24278    ), CNGB1_BOVIN (Q28181    ), CNGB1_HUMAN (Q14028    ), 
CNGB3_CANLF (Q8MJD7    ), CNGB3_HUMAN (Q9NQW8    ), CNGB3_MOUSE (Q9JJZ9    ), 
CNGK1_RHIEC (Q2K5E1    ), CNGK1_RHILO (Q98GN8    ), CNG_CAEEL   (Q03611    ), 
CNG_ICTPU   (P55934    ), CRP_ECO57   (P0ACK0    ), CRP_ECOL6   (P0ACJ9    ), 
CRP_ECOLI   (P0ACJ8    ), CRP_HAEIN   (P29281    ), CRP_KLEAE   (P0A2T7    ), 
CRP_PASMU   (O05689    ), CRP_SALTY   (P0A2T6    ), CRP_SHIFL   (P0ACK1    ), 
EGL4_CAEBR  (A8X6H1    ), EGL4_CAEEL  (O76360    ), GLSA2_BRADU (Q89KV2    ), 
HCN1_HUMAN  (O60741    ), HCN1_MOUSE  (O88704    ), HCN1_RABIT  (Q9MZS1    ), 
HCN1_RAT    (Q9JKB0    ), HCN2_HUMAN  (Q9UL51    ), HCN2_MOUSE  (O88703    ), 
HCN2_RAT    (Q9JKA9    ), HCN4_HUMAN  (Q9Y3Q4    ), HCN4_MOUSE  (O70507    ), 
HCN4_RABIT  (Q9TV66    ), HCN4_RAT    (Q9JKA7    ), KAP0_BOVIN  (P00514    ), 
KAP0_CHICK  (Q5ZM91    ), KAP0_HUMAN  (P10644    ), KAP0_MESAU  (P86244    ), 
KAP0_MOUSE  (Q9DBC7    ), KAP0_PIG    (P07802    ), KAP0_PONAB  (Q5REL1    ), 
KAP0_RAT    (P09456    ), KAP1_HUMAN  (P31321    ), KAP1_MOUSE  (P12849    ), 
KAP1_RAT    (P81377    ), KAP2_BOVIN  (P00515    ), KAP2_HUMAN  (P13861    ), 
KAP2_MOUSE  (P12367    ), KAP2_RAT    (P12368    ), KAP3_BOVIN  (P31322    ), 
KAP3_HUMAN  (P31323    ), KAP3_MOUSE  (P31324    ), KAP3_RAT    (P12369    ), 
KAPR1_DROME (P16905    ), KAPR2_DROME (P81900    ), KAPR_APLCA  (P31319    ), 
KAPR_ASHGO  (Q75AM2    ), KAPR_ASPFU  (Q96UX3    ), KAPR_ASPNG  (Q9C196    ), 
KAPR_BLAEM  (P31320    ), KAPR_BLUGR  (Q9HEP7    ), KAPR_CAEEL  (P30625    ), 
KAPR_CANAL  (Q9HEW1    ), KAPR_CANGA  (Q6FQL6    ), KAPR_COLOR  (Q9C1C2    ), 
KAPR_COLTR  (O42794    ), KAPR_DEBHA  (Q6BZG7    ), KAPR_DICDI  (P05987    ), 
KAPR_EMENI  (O59922    ), KAPR_HYPAT  (Q86ZN7    ), KAPR_KLULA  (Q6CPK7    ), 
KAPR_MAGO7  (O14448    ), KAPR_MUCCL  (Q8TF77    ), KAPR_NEUCR  (Q01386    ), 
KAPR_SCHPO  (P36600    ), KAPR_STRPU  (Q26619    ), KAPR_USTMA  (P49605    ), 
KAPR_YARLI  (Q6C2X0    ), KAPR_YEAST  (P07278    ), KGP1_BOVIN  (P00516    ), 
KGP1_DROME  (Q03042    ), KGP1_HUMAN  (Q13976    ), KGP1_MOUSE  (P0C605    ), 
KGP24_DROME (Q03043    ), KGP25_DROME (P32023    ), KGP2_HUMAN  (Q13237    ), 
KGP2_MOUSE  (Q61410    ), KGP2_RAT    (Q64595    ), NTE1_SCHPO  (Q9USJ4    ), 
VFR_PSEAE   (P55222    )
» more

UniProtKB/Swiss-Prot
False negative sequences
182 sequences

AKT1_ARATH  (Q38998    ), AKT1_ORYSI  (P0C550    ), AKT1_ORYSJ  (Q0JKV1    ), 
AKT2_ARATH  (Q38898    ), AKT2_ORYSJ  (Q75HP9    ), AKT3_ORYSJ  (Q8H569    ), 
AKT5_ARATH  (Q9SCX5    ), AKT6_ARATH  (Q8GXE6    ), ANR_PSEPH   (O85222    ), 
ARCR_STAA1  (A7X715    ), ARCR_STAA2  (A6U515    ), ARCR_STAA3  (Q2FDM8    ), 
ARCR_STAA8  (Q2FUY1    ), ARCR_STAA9  (A5IW58    ), ARCR_STAAB  (Q2YWH5    ), 
ARCR_STAAC  (Q5HCR6    ), ARCR_STAAE  (A6QKC0    ), ARCR_STAAM  (Q99R06    ), 
ARCR_STAAN  (Q7A381    ), ARCR_STAAR  (Q6GDH1    ), ARCR_STAAS  (Q6G643    ), 
ARCR_STAAT  (A8Z5D0    ), ARCR_STAAW  (Q8NUK9    ), ARCR_STAEQ  (Q5HKU6    ), 
ARCR_STAES  (Q8CML2    ), ARCR_STAHJ  (Q4L9J7    ), CLP_XANAC   (Q8PQ45    ), 
CLP_XANC5   (Q3BYB3    ), CLP_XANC8   (Q4UZF6    ), CLP_XANCB   (B0RN01    ), 
CLP_XANCP   (P22260    ), CLP_XANOM   (Q2NYD9    ), CLP_XANOP   (B2SL05    ), 
CLP_XANOR   (Q5GV61    ), CMR_MYCTO   (P9WMH4    ), CMR_MYCTU   (P9WMH5    ), 
CN15A_MEDTR (G7IBJ4    ), CN15B_MEDTR (G7JND3    ), CN15C_MEDTR (A0A072VMJ3), 
CNBD1_HUMAN (Q8NA66    ), CNG10_ARATH (Q9LNJ0    ), CNG11_ARATH (Q9SKD6    ), 
CNG12_ARATH (Q8GWD2    ), CNG13_ARATH (Q9LD40    ), CNG14_ARATH (Q9SJA4    ), 
CNG15_ARATH (Q9SL29    ), CNG16_ARATH (Q9SU64    ), CNG17_ARATH (Q8L7Z0    ), 
CNG18_ARATH (Q9LEQ3    ), CNG19_ARATH (Q9LDR2    ), CNG20_ARATH (Q9LD37    ), 
CNGC1_ARATH (O65717    ), CNGC2_ARATH (O65718    ), CNGC3_ARATH (Q9SKD7    ), 
CNGC4_ARATH (Q94AS9    ), CNGC5_ARATH (Q8RWS9    ), CNGC6_ARATH (O82226    ), 
CNGC7_ARATH (Q9S9N5    ), CNGC8_ARATH (Q9FXH6    ), CNGC9_ARATH (Q9M0A4    ), 
CRPL_CORGL  (Q79VI7    ), CRPL_MYCTO  (P9WMH2    ), CRPL_MYCTU  (P9WMH3    ), 
GBPC_DICDI  (Q8MVR1    ), GBPD_DICDI  (Q54S40    ), GORK_ARATH  (Q94A76    ), 
HCN3_HUMAN  (Q9P1Z3    ), HCN3_MOUSE  (O88705    ), HCN3_RAT    (Q9JKA8    ), 
KAT1_ARATH  (Q39128    ), KAT1_ORYSJ  (Q6K3T2    ), KAT2_ARATH  (Q38849    ), 
KAT2_ORYSJ  (Q5QNI1    ), KAT3_ARATH  (P92960    ), KAT3_ORYSJ  (Q5JM04    ), 
KAT4_ORYSJ  (Q652U9    ), KAT5_ORYSJ  (Q7XT08    ), KAT6_ORYSJ  (A2ZX97    ), 
KCNAE_DROME (Q02280    ), KCNH1_BOVIN (O18965    ), KCNH1_HUMAN (O95259    ), 
KCNH1_MOUSE (Q60603    ), KCNH1_RAT   (Q63472    ), KCNH2_CANLF (Q9TSZ3    ), 
KCNH2_HUMAN (Q12809    ), KCNH2_MOUSE (O35219    ), KCNH2_RABIT (Q8WNY2    ), 
KCNH2_RAT   (O08962    ), KCNH3_HUMAN (Q9ULD8    ), KCNH3_MOUSE (Q9WVJ0    ), 
KCNH3_RAT   (O89047    ), KCNH4_HUMAN (Q9UQ05    ), KCNH4_RAT   (Q9R1T9    ), 
KCNH5_HUMAN (Q8NCM2    ), KCNH5_MOUSE (Q920E3    ), KCNH5_RAT   (Q9EPI9    ), 
KCNH6_CHICK (Q9PT84    ), KCNH6_HUMAN (Q9H252    ), KCNH6_RAT   (O54853    ), 
KCNH7_HUMAN (Q9NS40    ), KCNH7_MOUSE (Q9ER47    ), KCNH7_RAT   (O54852    ), 
KCNH8_HUMAN (Q96L42    ), KCNH8_MOUSE (P59111    ), KCNH8_RAT   (Q9QWS8    ), 
KGP1_RABIT  (O77676    ), KOR1_ORYSJ  (Q653P0    ), KOR2_ORYSJ  (Q7XUW4    ), 
LDRP_THET2  (Q746J8    ), LDRP_THET8  (Q53W63    ), NTE1_ASHGO  (Q756Z0    ), 
NTE1_ASPCL  (A1C9L6    ), NTE1_ASPFU  (Q4WA15    ), NTE1_ASPNC  (A2R350    ), 
NTE1_ASPOR  (Q2UDH2    ), NTE1_ASPTN  (Q0CNC7    ), NTE1_CANAL  (Q5A368    ), 
NTE1_CANGA  (Q6FKJ1    ), NTE1_CHAGB  (Q2H0D3    ), NTE1_COCIM  (Q1DLC7    ), 
NTE1_CRYNB  (P0CP37    ), NTE1_CRYNJ  (P0CP36    ), NTE1_DEBHA  (Q6BQK9    ), 
NTE1_EMENI  (Q5BAE9    ), NTE1_KLULA  (Q6CWC2    ), NTE1_LODEL  (A5E708    ), 
NTE1_MAGO7  (A4QVZ8    ), NTE1_NEOFI  (A1D9Y2    ), NTE1_NEUCR  (Q7S8J1    ), 
NTE1_PHANO  (Q0UJ42    ), NTE1_PICGU  (A5DHA3    ), NTE1_PICST  (A3LYZ4    ), 
NTE1_USTMA  (Q4PF83    ), NTE1_YARLI  (Q6CF18    ), NTE1_YEAST  (Q04958    ), 
P2C19_ARATH (Q9SL76    ), PAT_MYCS2   (A0R3F9    ), PAT_MYCTU   (O05581    ), 
PDE5_DICDI  (Q8MLZ3    ), PDE6_DICDI  (Q8MM62    ), PLPL6_HUMAN (Q8IY17    ), 
PLPL6_MOUSE (Q3TRM4    ), PLPL6_PONAB (Q5RDS0    ), PLPL7_HUMAN (Q6ZV29    ), 
PLPL7_MOUSE (A2AJ88    ), PLPL7_RAT   (Q5BK26    ), RPGF1_CAEEL (P34578    ), 
RPGF2_BOVIN (F1MSG6    ), RPGF2_CANLF (F1PBJ0    ), RPGF2_HUMAN (Q9Y4G8    ), 
RPGF2_MOUSE (Q8CHG7    ), RPGF2_RAT   (F1M386    ), RPGF3_HUMAN (O95398    ), 
RPGF3_MOUSE (Q8VCC8    ), RPGF3_RAT   (Q9Z1C8    ), RPGF4_HUMAN (Q8WZA2    ), 
RPGF4_MOUSE (Q9EQZ6    ), RPGF_CAEEL  (G5EDB9    ), SDRP_THET8  (Q5SIL0    ), 
SKOR_ARATH  (Q9M8S6    ), SL9C1_HUMAN (Q4G0N8    ), SL9C1_MOUSE (Q6UJY2    ), 
SL9C2_HUMAN (Q5TAH2    ), SWS_DROAN   (B3MRI9    ), SWS_DROER   (B3NY03    ), 
SWS_DROGR   (B4JLX2    ), SWS_DROME   (Q9U969    ), SWS_DROMO   (B4L535    ), 
SWS_DROPE   (B4H3U8    ), SWS_DROPS   (B5DKS8    ), SWS_DROSE   (B4IL64    ), 
SWS_DROVI   (B4M709    ), SWS_DROWI   (B4N1W9    ), SWS_DROYA   (B4Q0P3    ), 
Y073_MYCTO  (P9WQK4    ), Y073_MYCTU  (P9WQK5    ), Y2565_MYCTO (P9WIY6    ), 
Y2565_MYCTU (P9WIY7    ), Y2594_MYCBO (P0A643    ), Y4233_RHOPA (Q02006    ), 
YOL4_CAEEL  (Q02331    ), YVL7_CAEEL  (Q21534    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

KAP2_PIG    (P05207    )

		
UniProtKB/Swiss-Prot
False positive sequences
9 sequences

ALG11_HUMAN (Q2TAA5    ), ALG11_PONAB (Q5R7Z6    ), CARA_SULTO  (Q970U8    ), 
CBIMQ_METLZ (A2SSD6    ), DAPB_MAGO7  (A4QYQ5    ), SFSA_GEOMG  (Q39WK9    ), 
SFSA_GEOSL  (P61664    ), SFSA_TRIEI  (Q111B4    ), SYT15_HUMAN (Q9BQS2    )
» more

PDB
[Detailed view]
110 PDB

1CGP; 1CX4; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1NE4; 1NE6; 1O3Q; 1O3R; 1O3S; 1O3T; 1Q3E; 1RGS; 1RL3; 1RUN; 1RUO; 1U12; 1VP6; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2CGP; 2GZW; 2K0G; 2KXL; 2MNG; 2MPF; 2OZ6; 2Q0A; 2QCS; 2QVS; 2WC2; 3BPZ; 3CL1; 3CLP; 3CO2; 3ETQ; 3FFQ; 3FHI; 3FWE; 3HIF; 3IDB; 3IDC; 3IIA; 3IYD; 3J4Q; 3J4R; 3KCC; 3N4M; 3OCP; 3OD0; 3OF1; 3OGJ; 3OTF; 3PLQ; 3PNA; 3PVB; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 3SHR; 3TNP; 3TNQ; 3U0Z; 3U10; 3U11; 4BH9; 4BHP; 4CHV; 4CHW; 4DIN; 4FT8; 4HBN; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B; 4JV4; 4JVA; 4KL1; 4KU7; 4KU8; 4MUV; 4MX3; 4NVP; 4QX5; 4QXK; 4R8H; 4WBB; 4X6Q; 4X6R; 4Z07; 5BV6; 5C6C; 5C8W; 5CIZ; 5KHG; 5KHH; 5KHI; 5KHJ; 5KHK
» more

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