Entry: PS00889

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General information about the entry

Entry name [info] CNMP_BINDING_2
Accession [info] PS00889
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); OCT-1993 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00691

Name and characterization of the entry

Description [info] Cyclic nucleotide-binding domain signature 2.
Pattern [info]
[LIVMF]-G-E-x-[GAS]-[LIVM]-x(5,11)-R-[STAQ]-A-x-[LIVMA]-x-[STACV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 161 in 109 different sequences
Number of true positive hits 155 in 103 different sequences
Number of 'unknown' hits
Number of false positive hits 6 in 6 different sequences
Number of false negative sequences 182
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 96.27 %
Recall (true positives / (true positives + false negatives)) 45.99 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
103 sequences

CNBD2_MOUSE (Q9D5U8), CNG1_CHICK  (Q90805), CNG3_CHICK  (Q90980), 
CNGA1_BOVIN (Q00194), CNGA1_CANFA (Q28279), CNGA1_HUMAN (P29973), 
CNGA1_MOUSE (P29974), CNGA1_RAT   (Q62927), CNGA2_BOVIN (Q03041), 
CNGA2_HUMAN (Q16280), CNGA2_MOUSE (Q62398), CNGA2_RABIT (Q28718), 
CNGA2_RAT   (Q00195), CNGA3_BOVIN (Q29441), CNGA3_HUMAN (Q16281), 
CNGA3_MOUSE (Q9JJZ8), CNGA4_HUMAN (Q8IV77), CNGA4_MOUSE (Q3UW12), 
CNGA4_RAT   (Q64359), CNGA_DROME  (Q24278), CNGB1_BOVIN (Q28181), 
CNGB1_HUMAN (Q14028), CNGB3_CANFA (Q8MJD7), CNGB3_HUMAN (Q9NQW8), 
CNGB3_MOUSE (Q9JJZ9), CNGK1_RHIEC (Q2K5E1), CNGK1_RHILO (Q98GN8), 
CNG_CAEEL   (Q03611), CNG_ICTPU   (P55934), CRP_ECO57   (P0ACK0), 
CRP_ECOL6   (P0ACJ9), CRP_ECOLI   (P0ACJ8), CRP_ENTAE   (P0A2T7), 
CRP_HAEIN   (P29281), CRP_PASMU   (O05689), CRP_SALTY   (P0A2T6), 
CRP_SHIFL   (P0ACK1), EGL4_CAEBR  (A8X6H1), EGL4_CAEEL  (O76360), 
KAP0_BOVIN  (P00514), KAP0_CHICK  (Q5ZM91), KAP0_HUMAN  (P10644), 
KAP0_MOUSE  (Q9DBC7), KAP0_PIG    (P07802), KAP0_PONAB  (Q5REL1), 
KAP0_RAT    (P09456), KAP1_HUMAN  (P31321), KAP1_MOUSE  (P12849), 
KAP1_RAT    (P81377), KAP2_BOVIN  (P00515), KAP2_HUMAN  (P13861), 
KAP2_MOUSE  (P12367), KAP2_RAT    (P12368), KAP3_BOVIN  (P31322), 
KAP3_HUMAN  (P31323), KAP3_MOUSE  (P31324), KAP3_RAT    (P12369), 
KAPR1_DROME (P16905), KAPR2_DROME (P81900), KAPR_APLCA  (P31319), 
KAPR_ASHGO  (Q75AM2), KAPR_ASPFU  (Q96UX3), KAPR_ASPNG  (Q9C196), 
KAPR_BLAEM  (P31320), KAPR_BLUGR  (Q9HEP7), KAPR_CAEEL  (P30625), 
KAPR_CANAL  (Q9HEW1), KAPR_CANGA  (Q6FQL6), KAPR_COLOR  (Q9C1C2), 
KAPR_COLTR  (O42794), KAPR_DEBHA  (Q6BZG7), KAPR_DICDI  (P05987), 
KAPR_EMENI  (O59922), KAPR_HYPAT  (Q86ZN7), KAPR_KLULA  (Q6CPK7), 
KAPR_MAGO7  (O14448), KAPR_MUCCL  (Q8TF77), KAPR_NEUCR  (Q01386), 
KAPR_SCHPO  (P36600), KAPR_STRPU  (Q26619), KAPR_USTMA  (P49605), 
KAPR_YARLI  (Q6C2X0), KAPR_YEAST  (P07278), KGP1_BOVIN  (P00516), 
KGP1_DROME  (Q03042), KGP1_HUMAN  (Q13976), KGP1_MOUSE  (P0C605), 
KGP1_RABIT  (O77676), KGP24_DROME (Q03043), KGP25_DROME (P32023), 
KGP2_HUMAN  (Q13237), KGP2_MOUSE  (Q61410), KGP2_RAT    (Q64595), 
PAT_MYCS2   (A0R3F9), PAT_MYCTU   (O05581), PDE5_DICDI  (Q8MLZ3), 
VFR_PSEAE   (P55222), Y073_MYCTO  (P9WQK4), Y073_MYCTU  (P9WQK5), 
Y2564_MYCTO (P9WQI4), Y2564_MYCTU (P9WQI5), Y2593_MYCBO (P63402), 
Y4233_RHOPA (Q02006)
» More

UniProtKB/Swiss-Prot
False negative sequences
182 sequences

AKT1_ARATH  (Q38998), AKT1_ORYSI  (P0C550), AKT1_ORYSJ  (Q0JKV1), 
AKT2_ARATH  (Q38898), AKT2_ORYSJ  (Q75HP9), AKT3_ORYSJ  (Q8H569), 
AKT5_ARATH  (Q9SCX5), AKT6_ARATH  (Q8GXE6), ANR_PSEFL   (O85222), 
ARCR_STAA1  (A7X715), ARCR_STAA2  (A6U515), ARCR_STAA3  (Q2FDM8), 
ARCR_STAA8  (Q2FUY1), ARCR_STAA9  (A5IW58), ARCR_STAAB  (Q2YWH5), 
ARCR_STAAC  (Q5HCR6), ARCR_STAAE  (A6QKC0), ARCR_STAAM  (Q99R06), 
ARCR_STAAN  (Q7A381), ARCR_STAAR  (Q6GDH1), ARCR_STAAS  (Q6G643), 
ARCR_STAAT  (A8Z5D0), ARCR_STAAW  (Q8NUK9), ARCR_STAEQ  (Q5HKU6), 
ARCR_STAES  (Q8CML2), ARCR_STAHJ  (Q4L9J7), CLP_XANAC   (Q8PQ45), 
CLP_XANC5   (Q3BYB3), CLP_XANC8   (Q4UZF6), CLP_XANCB   (B0RN01), 
CLP_XANCP   (P22260), CLP_XANOM   (Q2NYD9), CLP_XANOP   (B2SL05), 
CLP_XANOR   (Q5GV61), CMR_MYCTO   (P9WMH4), CMR_MYCTU   (P9WMH5), 
CNBD1_HUMAN (Q8NA66), CNBD2_HUMAN (Q96M20), CNBD2_MACFA (Q95JR6), 
CNG10_ARATH (Q9LNJ0), CNG11_ARATH (Q9SKD6), CNG12_ARATH (Q8GWD2), 
CNG13_ARATH (Q9LD40), CNG14_ARATH (Q9SJA4), CNG15_ARATH (Q9SL29), 
CNG16_ARATH (Q9SU64), CNG17_ARATH (Q8L7Z0), CNG18_ARATH (Q9LEQ3), 
CNG19_ARATH (Q9LDR2), CNG20_ARATH (Q9LD37), CNGC1_ARATH (O65717), 
CNGC2_ARATH (O65718), CNGC3_ARATH (Q9SKD7), CNGC4_ARATH (Q94AS9), 
CNGC5_ARATH (Q8RWS9), CNGC6_ARATH (O82226), CNGC7_ARATH (Q9S9N5), 
CNGC8_ARATH (Q9FXH6), CNGC9_ARATH (Q9M0A4), CRP_MYCTO   (P9WMH2), 
CRP_MYCTU   (P9WMH3), GBPC_DICDI  (Q8MVR1), GBPD_DICDI  (Q54S40), 
GORK_ARATH  (Q94A76), HCN1_HUMAN  (O60741), HCN1_MOUSE  (O88704), 
HCN1_RABIT  (Q9MZS1), HCN1_RAT    (Q9JKB0), HCN2_HUMAN  (Q9UL51), 
HCN2_MOUSE  (O88703), HCN2_RAT    (Q9JKA9), HCN3_HUMAN  (Q9P1Z3), 
HCN3_MOUSE  (O88705), HCN3_RAT    (Q9JKA8), HCN4_HUMAN  (Q9Y3Q4), 
HCN4_MOUSE  (O70507), HCN4_RABIT  (Q9TV66), HCN4_RAT    (Q9JKA7), 
KAT1_ARATH  (Q39128), KAT1_ORYSJ  (Q6K3T2), KAT2_ARATH  (Q38849), 
KAT2_ORYSJ  (Q5QNI1), KAT3_ARATH  (P92960), KAT3_ORYSJ  (Q5JM04), 
KAT4_ORYSJ  (Q652U9), KAT5_ORYSJ  (Q7XT08), KAT6_ORYSJ  (A2ZX97), 
KCNAE_DROME (Q02280), KCNH1_BOVIN (O18965), KCNH1_HUMAN (O95259), 
KCNH1_MOUSE (Q60603), KCNH1_RAT   (Q63472), KCNH2_CANFA (Q9TSZ3), 
KCNH2_CHICK (Q9PT84), KCNH2_HUMAN (Q12809), KCNH2_MOUSE (O35219), 
KCNH2_RABIT (Q8WNY2), KCNH2_RAT   (O08962), KCNH3_HUMAN (Q9ULD8), 
KCNH3_MOUSE (Q9WVJ0), KCNH3_RAT   (O89047), KCNH4_HUMAN (Q9UQ05), 
KCNH4_RAT   (Q9R1T9), KCNH5_HUMAN (Q8NCM2), KCNH5_MOUSE (Q920E3), 
KCNH5_RAT   (Q9EPI9), KCNH6_HUMAN (Q9H252), KCNH6_RAT   (O54853), 
KCNH7_HUMAN (Q9NS40), KCNH7_MOUSE (Q9ER47), KCNH7_RAT   (O54852), 
KCNH8_HUMAN (Q96L42), KCNH8_MOUSE (P59111), KCNH8_RAT   (Q9QWS8), 
KOR1_ORYSJ  (Q653P0), KOR2_ORYSJ  (Q7XUW4), NTE1_ASHGO  (Q756Z0), 
NTE1_ASPCL  (A1C9L6), NTE1_ASPFU  (Q4WA15), NTE1_ASPNC  (A2R350), 
NTE1_ASPOR  (Q2UDH2), NTE1_ASPTN  (Q0CNC7), NTE1_CANAL  (Q5A368), 
NTE1_CANGA  (Q6FKJ1), NTE1_CHAGB  (Q2H0D3), NTE1_COCIM  (Q1DLC7), 
NTE1_CRYNB  (P0CP37), NTE1_CRYNJ  (P0CP36), NTE1_DEBHA  (Q6BQK9), 
NTE1_EMENI  (Q5BAE9), NTE1_KLULA  (Q6CWC2), NTE1_LODEL  (A5E708), 
NTE1_MAGO7  (A4QVZ8), NTE1_NEOFI  (A1D9Y2), NTE1_NEUCR  (Q7S8J1), 
NTE1_PHANO  (Q0UJ42), NTE1_PICGU  (A5DHA3), NTE1_PICST  (A3LYZ4), 
NTE1_SCHPO  (Q9USJ4), NTE1_USTMA  (Q4PF83), NTE1_YARLI  (Q6CF18), 
NTE1_YEAST  (Q04958), P2C19_ARATH (Q9SL76), PDE6_DICDI  (Q8MM62), 
PLPL6_HUMAN (Q8IY17), PLPL6_MOUSE (Q3TRM4), PLPL6_PONAB (Q5RDS0), 
PLPL7_HUMAN (Q6ZV29), PLPL7_MOUSE (A2AJ88), PLPL7_RAT   (Q5BK26), 
RPGF1_CAEEL (P34578), RPGF2_BOVIN (F1MSG6), RPGF2_CANFA (F1PBJ0), 
RPGF2_HUMAN (Q9Y4G8), RPGF2_MOUSE (Q8CHG7), RPGF2_RAT   (F1M386), 
RPGF3_HUMAN (O95398), RPGF3_MOUSE (Q8VCC8), RPGF3_RAT   (Q9Z1C8), 
RPGF4_HUMAN (Q8WZA2), RPGF4_MOUSE (Q9EQZ6), RPGF_CAEEL  (G5EDB9), 
SKOR_ARATH  (Q9M8S6), SL9C1_HUMAN (Q4G0N8), SL9C1_MOUSE (Q6UJY2), 
SL9C2_HUMAN (Q5TAH2), SWS_DROAN   (B3MRI9), SWS_DROER   (B3NY03), 
SWS_DROGR   (B4JLX2), SWS_DROME   (Q9U969), SWS_DROMO   (B4L535), 
SWS_DROPE   (B4H3U8), SWS_DROPS   (B5DKS8), SWS_DROSE   (B4IL64), 
SWS_DROVI   (B4M709), SWS_DROWI   (B4N1W9), SWS_DROYA   (B4Q0P3), 
Y2565_MYCTO (P9WIY6), Y2565_MYCTU (P9WIY7), Y2594_MYCBO (P0A643), 
YOL4_CAEEL  (Q02331), YVL7_CAEEL  (Q21534)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

KAP0_MESAU  (P86244), KAP2_PIG    (P05207)

		
UniProtKB/Swiss-Prot
False positive sequences
6 sequences

TPIS2_BRUA2 (Q2YIQ6), TPIS2_BRUAB (P0C119), TPIS2_BRUME (Q8YCV3), 
TPIS2_BRUSU (Q8FVH2), XANB_XANCB  (B0RVK6), XANB_XANCP  (P0C7J3)
» More

PDB
[Detailed view]
81 PDB

1CGP; 1CX4; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1NE4; 1NE6; 1O3Q; 1O3R; 1O3S; 1O3T; 1RGS; 1RL3; 1RUN; 1RUO; 1U12; 1VP6; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2CGP; 2GZW; 2K0G; 2KXL; 2OZ6; 2QCS; 2QVS; 2WC2; 3CL1; 3ETQ; 3FHI; 3FWE; 3HIF; 3IDB; 3IDC; 3IIA; 3IYD; 3J4Q; 3J4R; 3KCC; 3N4M; 3OCP; 3OD0; 3OF1; 3OGJ; 3PLQ; 3PNA; 3PVB; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 3SHR; 3TNP; 3TNQ; 4AVA; 4AVB; 4AVC; 4BH9; 4BHP; 4CHV; 4CHW; 4DIN; 4FT8; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B; 4JV4; 4JVA; 4KU7; 4KU8; 4MX3
» More

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