Entry: PS00894

General information about the entry

Entry name [info] HTH_DEOR_1
Accession [info] PS00894
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00696

Name and characterization of the entry

Description [info] DeoR-type HTH domain signature.
Pattern [info]
R-{G}-x(2)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNAQ]-
D-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 83 in 83 different sequences
Number of true positive hits 82 in 82 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.80 %
Recall (true positives / (true positives + false negatives)) 95.35 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
82 sequences

ACCR_AGRFC  (P32104), AGAR_ECO57  (P0ACK4), AGAR_ECOL6  (P0ACK3), 
AGAR_ECOLI  (P0ACK2), DEOR_ECO57  (P0ACK7), DEOR_ECOL6  (P0ACK6), 
DEOR_ECOLI  (P0ACK5), FRUR_BACSU  (O31713), FUCR_ECOLI  (P0ACK8), 
FUCR_HAEIN  (P44780), FUCR_SHIFL  (P0ACK9), GATR_ECOLI  (P36930), 
GLCR_BACSU  (P94591), GLPR_ECOLI  (P0ACL0), GLPR_HAEIN  (P44784), 
GLPR_HALVD  (D4GYE7), GLPR_PSEAE  (Q51391), GLPR_SHIFL  (P0ACL1), 
IOLR_BACSU  (P46337), LACR_LACLL  (P18816), LACR_STAA8  (P0A0Q0), 
LACR_STAAC  (Q5HE08), LACR_STAAM  (P67743), LACR_STAAN  (P67744), 
LACR_STAAR  (Q6GEN3), LACR_STAAS  (Q6G7B8), LACR_STAAW  (P0A0P9), 
LACR_STAEQ  (Q5HM34), LACR_STAES  (Q8CRJ1), LACR_STRMU  (P26422), 
SGCR_ECOLI  (P39361), SP3D_BACSU  (P15281), SRLR_ECOLI  (P15082), 
ULAR_ECO24  (A7ZV62), ULAR_ECO27  (B7UQK0), ULAR_ECO45  (B7MLJ6), 
ULAR_ECO55  (B7LC45), ULAR_ECO57  (P0A9W2), ULAR_ECO5E  (B5Z2J7), 
ULAR_ECO7I  (B7NTP7), ULAR_ECO81  (B7MSL0), ULAR_ECO8A  (B7M8V1), 
ULAR_ECOBW  (C4ZR68), ULAR_ECODH  (B1XDU2), ULAR_ECOHS  (A8A7T7), 
ULAR_ECOK1  (A1AJ96), ULAR_ECOL5  (Q0T9K2), ULAR_ECOL6  (P0A9W1), 
ULAR_ECOLC  (B1IT15), ULAR_ECOLI  (P0A9W0), ULAR_ECOLU  (B7NGC5), 
ULAR_ECOSE  (B6I296), ULAR_ECOSM  (B1LQL1), ULAR_ECOUT  (Q1R369), 
ULAR_SALA4  (B5F3A7), ULAR_SALAR  (A9MFM3), ULAR_SALCH  (Q57GK1), 
ULAR_SALDC  (B5FS93), ULAR_SALEP  (B5R0Q8), ULAR_SALHS  (B4TFC5), 
ULAR_SALNS  (B4T3E2), ULAR_SALPA  (Q5PJ50), ULAR_SALPB  (A9N507), 
ULAR_SALPC  (C0Q6E8), ULAR_SALPK  (B5BKJ9), ULAR_SALSV  (B4TSH1), 
ULAR_SALTI  (Q8XG96), ULAR_SALTY  (Q7CP93), ULAR_SHIB3  (B2TY64), 
ULAR_SHIBS  (Q31TC2), ULAR_SHIDS  (Q328K6), ULAR_SHIF8  (Q0SX94), 
ULAR_SHIFL  (Q83P30), ULAR_SHISS  (Q3YUF6), Y1009_HAEIN (P44978), 
Y1102_STAES (Q8CSL5), YCIT_ECOLI  (P76034), YDJF_ECOLI  (P77721), 
YFJR_ECOLI  (P52133), YGBI_ECOLI  (P52598), YIHW_ECOLI  (P32144), 
YULB_BACSU  (O05261)
» More

UniProtKB/Swiss-Prot
False negative sequences
4 sequences

CCPN_BACSU  (O34994), YCNK_BACSU  (P94433), YOBV_BACSU  (O34920), 
YTZE_BACSU  (O32067)
» More

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

MVP1_YARLI  (Q6CHY6)

		
PDB
[Detailed view]
1 PDB

2L0K

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