Entry: PS00894

General information about the entry
Entry name HTH_DEOR_1
Accession number PS00894
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00696
Name and characterization of the entry
DescriptionDeoR-type HTH domain signature.
Pattern R-{G}-x(2)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNAQ]- D-[LIVMF].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 82 hits in 82 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 81 hits in 81 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 98.78 %
  • Recall (true hits / (true hits + false negatives)): 95.29 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ACCR_AGRT5  (P32104), AGAR_ECO57  (P0ACK4), AGAR_ECOL6  (P0ACK3), 
AGAR_ECOLI  (P0ACK2), DEOR_ECO57  (P0ACK7), DEOR_ECOL6  (P0ACK6), 
DEOR_ECOLI  (P0ACK5), FRUR_BACSU  (O31713), FUCR_ECOLI  (P0ACK8), 
FUCR_HAEIN  (P44780), FUCR_SHIFL  (P0ACK9), GATR_ECOLI  (P36930), 
GLCR_BACSU  (P94591), GLPR_ECOLI  (P0ACL0), GLPR_HAEIN  (P44784), 
GLPR_PSEAE  (Q51391), GLPR_SHIFL  (P0ACL1), IOLR_BACSU  (P46337), 
LACR_LACLL  (P18816), LACR_STAA8  (P0A0Q0), LACR_STAAC  (Q5HE08), 
LACR_STAAM  (P67743), LACR_STAAN  (P67744), LACR_STAAR  (Q6GEN3), 
LACR_STAAS  (Q6G7B8), LACR_STAAW  (P0A0P9), LACR_STAEQ  (Q5HM34), 
LACR_STAES  (Q8CRJ1), LACR_STRMU  (P26422), SGCR_ECOLI  (P39361), 
SP3D_BACSU  (P15281), SRLR_ECOLI  (P15082), ULAR_ECO24  (A7ZV62), 
ULAR_ECO27  (B7UQK0), ULAR_ECO45  (B7MLJ6), ULAR_ECO55  (B7LC45), 
ULAR_ECO57  (P0A9W2), ULAR_ECO5E  (B5Z2J7), ULAR_ECO7I  (B7NTP7), 
ULAR_ECO81  (B7MSL0), ULAR_ECO8A  (B7M8V1), ULAR_ECOBW  (C4ZR68), 
ULAR_ECODH  (B1XDU2), ULAR_ECOHS  (A8A7T7), ULAR_ECOK1  (A1AJ96), 
ULAR_ECOL5  (Q0T9K2), ULAR_ECOL6  (P0A9W1), ULAR_ECOLC  (B1IT15), 
ULAR_ECOLI  (P0A9W0), ULAR_ECOLU  (B7NGC5), ULAR_ECOSE  (B6I296), 
ULAR_ECOSM  (B1LQL1), ULAR_ECOUT  (Q1R369), ULAR_SALA4  (B5F3A7), 
ULAR_SALAR  (A9MFM3), ULAR_SALCH  (Q57GK1), ULAR_SALDC  (B5FS93), 
ULAR_SALEP  (B5R0Q8), ULAR_SALHS  (B4TFC5), ULAR_SALNS  (B4T3E2), 
ULAR_SALPA  (Q5PJ50), ULAR_SALPB  (A9N507), ULAR_SALPC  (C0Q6E8), 
ULAR_SALPK  (B5BKJ9), ULAR_SALSV  (B4TSH1), ULAR_SALTI  (Q8XG96), 
ULAR_SALTY  (Q7CP93), ULAR_SHIB3  (B2TY64), ULAR_SHIBS  (Q31TC2), 
ULAR_SHIDS  (Q328K6), ULAR_SHIF8  (Q0SX94), ULAR_SHIFL  (Q83P30), 
ULAR_SHISS  (Q3YUF6), Y1009_HAEIN (P44978), Y1102_STAES (Q8CSL5), 
YCIT_ECOLI  (P76034), YDJF_ECOLI  (P77721), YFJR_ECOLI  (P52133), 
YGBI_ECOLI  (P52598), YIHW_ECOLI  (P32144), YULB_BACSU  (O05261)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CCPN_BACSU  (O34994), YCNK_BACSU  (P94433), YOBV_BACSU  (O34920), 
YTZE_BACSU  (O32067)
False positive hits (sequences which do not belong to the set under consideration):
MVP1_YARLI  (Q6CHY6)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
2L0K;

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