Entry: PS00894

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General information about the entry

Entry name [info] HTH_DEOR_1
Accession [info] PS00894
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00696

Name and characterization of the entry

Description [info] DeoR-type HTH domain signature.
Pattern [info]
R-{G}-x(2)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNAQ]-
D-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 83 in 83 different sequences
Number of true positive hits 82 in 82 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.80 %
Recall (true positives / (true positives + false negatives)) 95.35 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
82 sequences

ACCR_AGRT5  (P32104), AGAR_ECO57  (P0ACK4), AGAR_ECOL6  (P0ACK3), 
AGAR_ECOLI  (P0ACK2), DEOR_ECO57  (P0ACK7), DEOR_ECOL6  (P0ACK6), 
DEOR_ECOLI  (P0ACK5), FRUR_BACSU  (O31713), FUCR_ECOLI  (P0ACK8), 
FUCR_HAEIN  (P44780), FUCR_SHIFL  (P0ACK9), GATR_ECOLI  (P36930), 
GLCR_BACSU  (P94591), GLPR_ECOLI  (P0ACL0), GLPR_HAEIN  (P44784), 
GLPR_HALVD  (D4GYE7), GLPR_PSEAE  (Q51391), GLPR_SHIFL  (P0ACL1), 
IOLR_BACSU  (P46337), LACR_LACLL  (P18816), LACR_STAA8  (P0A0Q0), 
LACR_STAAC  (Q5HE08), LACR_STAAM  (P67743), LACR_STAAN  (P67744), 
LACR_STAAR  (Q6GEN3), LACR_STAAS  (Q6G7B8), LACR_STAAW  (P0A0P9), 
LACR_STAEQ  (Q5HM34), LACR_STAES  (Q8CRJ1), LACR_STRMU  (P26422), 
SGCR_ECOLI  (P39361), SP3D_BACSU  (P15281), SRLR_ECOLI  (P15082), 
ULAR_ECO24  (A7ZV62), ULAR_ECO27  (B7UQK0), ULAR_ECO45  (B7MLJ6), 
ULAR_ECO55  (B7LC45), ULAR_ECO57  (P0A9W2), ULAR_ECO5E  (B5Z2J7), 
ULAR_ECO7I  (B7NTP7), ULAR_ECO81  (B7MSL0), ULAR_ECO8A  (B7M8V1), 
ULAR_ECOBW  (C4ZR68), ULAR_ECODH  (B1XDU2), ULAR_ECOHS  (A8A7T7), 
ULAR_ECOK1  (A1AJ96), ULAR_ECOL5  (Q0T9K2), ULAR_ECOL6  (P0A9W1), 
ULAR_ECOLC  (B1IT15), ULAR_ECOLI  (P0A9W0), ULAR_ECOLU  (B7NGC5), 
ULAR_ECOSE  (B6I296), ULAR_ECOSM  (B1LQL1), ULAR_ECOUT  (Q1R369), 
ULAR_SALA4  (B5F3A7), ULAR_SALAR  (A9MFM3), ULAR_SALCH  (Q57GK1), 
ULAR_SALDC  (B5FS93), ULAR_SALEP  (B5R0Q8), ULAR_SALHS  (B4TFC5), 
ULAR_SALNS  (B4T3E2), ULAR_SALPA  (Q5PJ50), ULAR_SALPB  (A9N507), 
ULAR_SALPC  (C0Q6E8), ULAR_SALPK  (B5BKJ9), ULAR_SALSV  (B4TSH1), 
ULAR_SALTI  (Q8XG96), ULAR_SALTY  (Q7CP93), ULAR_SHIB3  (B2TY64), 
ULAR_SHIBS  (Q31TC2), ULAR_SHIDS  (Q328K6), ULAR_SHIF8  (Q0SX94), 
ULAR_SHIFL  (Q83P30), ULAR_SHISS  (Q3YUF6), Y1009_HAEIN (P44978), 
Y1102_STAES (Q8CSL5), YCIT_ECOLI  (P76034), YDJF_ECOLI  (P77721), 
YFJR_ECOLI  (P52133), YGBI_ECOLI  (P52598), YIHW_ECOLI  (P32144), 
YULB_BACSU  (O05261)
» More

UniProtKB/Swiss-Prot
False negative sequences
4 sequences

CCPN_BACSU  (O34994), YCNK_BACSU  (P94433), YOBV_BACSU  (O34920), 
YTZE_BACSU  (O32067)
» More

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

MVP1_YARLI  (Q6CHY6)

		
PDB
[Detailed view]
1 PDB

2L0K

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