Entry: PS00895

General information about the entry
Entry name 3_HYDROXYISOBUT_DH
Accession number PS00895
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00697
Name and characterization of the entry
Description3-hydroxyisobutyrate dehydrogenase signature.
Pattern [LIVMFY](2)-G-L-G-x-[MQ]-G-x(2)-[MA]-[SAV]-x-[SNHR].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 28 hits in 28 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 26 hits in 26 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 18
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 92.86 %
  • Recall (true hits / (true hits + false negatives)): 59.09 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
3HIDH_ARATH (Q9SUC0), 3HIDH_CAEEL (Q9XTI0), 3HIDH_DROME (Q9V8M5), 
3HIDH_HUMAN (P31937), 3HIDH_MOUSE (Q99L13), 3HIDH_PONAB (Q5R5E7), 
3HIDH_RABIT (P32185), 3HIDH_RAT   (P29266), GARR_ECOL6  (P0ABQ3), 
GARR_ECOLI  (P0ABQ2), GLXR_ECOLI  (P77161), GLYR1_AEDAE (Q175F8), 
GLYR1_ARATH (Q9LSV0), HMGD_EUBBA  (Q0QLF5), MMSB_MYCBO  (P63936), 
MMSB_MYCTU  (P63935), MMSB_PSEAE  (P28811), Y1010_HAEIN (P44979), 
Y1503_SHEFN (O33730), Y229_SYNY3  (Q55702), Y770_MYCTU  (P71825), 
YGBJ_ECOLI  (Q46888), YIHU_ECOLI  (P0A9V8), YIHU_SALTY  (Q9L7S0), 
YIHU_SHIFL  (P0A9V9), YKWC_BACSU  (O34948)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
3HID1_ARATH (Q9SZE1), 3HID2_ARATH (Q9C991), 3HID3_ARATH (Q949M8), 
3HIDH_BOVIN (Q2HJD7), 3HIDH_DICDI (Q54CX6), GLYR1_ANOGA (Q7Q161), 
GLYR1_BOVIN (A4FUF0), GLYR1_CHICK (Q5ZLS7), GLYR1_DANRE (Q5RKN4), 
GLYR1_DROME (Q8T079), GLYR1_DROPS (Q29NG1), GLYR1_HUMAN (Q49A26), 
GLYR1_MOUSE (Q922P9), GLYR1_PONAB (Q5R7T2), GLYR1_RAT   (Q5RKH0), 
GLYR1_XENTR (Q562D5), GLYR2_ARATH (F4I907), YFJR_BACSU  (O34969)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
3HIDH_MESAU (P86199)
False positive hits (sequences which do not belong to the set under consideration):
MSOX_STRAW  (Q827H4), MSOX_STRSB  (P40854)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 2GF2; 2I9P; 3CKY; 3DOJ;

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