To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS00946

General information about the entry

Entry name [info] CATHELICIDINS_1
Accession [info] PS00946
Entry type [info] PATTERN
Date [info] 01-JUN-1994 CREATED; 01-NOV-1997 DATA UPDATE; 25-OCT-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00729

Name and characterization of the entry

Description [info] Cathelicidins signature 1.
Pattern [info]
Y-x-[ED]-x-V-x-[RQ]-A-[LIVMA]-[DQG]-x-[LIVMFY]-N-[EQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_10 which contains 556'006 sequence entries.


Total number of hits 46 in 46 different sequences
Number of true positive hits 46 in 46 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 10
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.14 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
46 sequences

CAMP_ATEFR  (Q1KLY8    ), CAMP_ATEFU  (Q1KLY7    ), CAMP_CEBCA  (Q1KLY5    ), 
CAMP_GORGO  (Q1KLY3    ), CAMP_HUMAN  (P49913    ), CAMP_HYLML  (Q1KLX8    ), 
CAMP_MACFA  (Q1KLX7    ), CAMP_MACMU  (Q9GLV5    ), CAMP_MACTO  (Q1KLX6    ), 
CAMP_MOUSE  (P51437    ), CAMP_NOMCO  (Q1KLY0    ), CAMP_NOMGA  (Q1KLY2    ), 
CAMP_NOMLE  (Q1KLX9    ), CAMP_PANTR  (Q1KLX1    ), CAMP_PAPPA  (Q1KLX3    ), 
CAMP_SAGOE  (Q1KLX0    ), CAMP_TRACR  (Q1KLX5    ), CAMP_TRAOB  (Q1KLX4    ), 
CAP18_RABIT (P25230    ), CTHL1_BOVIN (P22226    ), CTHL1_SHEEP (P54230    ), 
CTHL2_BOVIN (P19660    ), CTHL2_CAPHI (P82018    ), CTHL2_SHEEP (P79362    ), 
CTHL3_BOVIN (P19661    ), CTHL3_SHEEP (P50415    ), CTHL4_BOVIN (P33046    ), 
CTHL5_BOVIN (P54229    ), CTHL6_BOVIN (P54228    ), CTHL7_BOVIN (P56425    ), 
ICTL_PIG    (P15175    ), P15A_RABIT  (P26202    ), P15B_RABIT  (P26203    ), 
PF11_PIG    (P51524    ), PF12_PIG    (P51525    ), PG1_PIG     (P32194    ), 
PG2_PIG     (P32195    ), PG3_PIG     (P32196    ), PG4_PIG     (P49933    ), 
PG5_PIG     (P49934    ), PMP23_PIG   (P49930    ), PMP36_PIG   (P49931    ), 
PMP37_PIG   (P49932    ), PR39_PIG    (P80054    ), SC51_SHEEP  (P49928    ), 
SC52_SHEEP  (P49929    )
» more

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

CAMP_BUNFA  (B6D434    ), CAMP_CALJA  (Q1KLY4    ), CAMP_CHLAE  (Q1KLY6    ), 
CAMP_NAJAT  (B6S2X0    ), CAMP_OPHHA  (B6S2X2    ), CAMP_PONPY  (Q1KLX2    ), 
CTHB1_CHICK (Q5F378    ), CTHL1_CHICK (Q6QLQ5    ), CTHL2_CHICK (Q2IAL7    ), 
CTHL3_CHICK (Q2IAL6    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

CTHL3_CAPHI (P85170    )

		
PDB
[Detailed view]
6 PDB

1KWI; 1LXE; 1N5H; 1N5P; 1PFP; 4EYC

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission