Entry: PS00947

General information about the entry
Entry name CATHELICIDINS_2
Accession number PS00947
Entry type PATTERN
Date JUN-1994 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00729
Name and characterization of the entry
DescriptionCathelicidins signature 2.
Pattern F-x-[LIVM]-K-E-T-x-C-x(10)-C-x-F-[KR]-[KE].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 49 hits in 49 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 49 hits in 49 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 87.50 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 8,disulfide
  • `Interesting' site in the pattern: 10,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CAMP_ATEFR  (Q1KLY8), CAMP_ATEFU  (Q1KLY7), CAMP_CALJA  (Q1KLY4), 
CAMP_CEBCA  (Q1KLY5), CAMP_CHLAE  (Q1KLY6), CAMP_GORGO  (Q1KLY3), 
CAMP_HUMAN  (P49913), CAMP_HYLML  (Q1KLX8), CAMP_MACFA  (Q1KLX7), 
CAMP_MACMU  (Q9GLV5), CAMP_MACTO  (Q1KLX6), CAMP_NOMCO  (Q1KLY0), 
CAMP_NOMGA  (Q1KLY2), CAMP_NOMLE  (Q1KLX9), CAMP_PANTR  (Q1KLX1), 
CAMP_PAPPA  (Q1KLX3), CAMP_PONPY  (Q1KLX2), CAMP_SAGOE  (Q1KLX0), 
CAMP_TRACR  (Q1KLX5), CAMP_TRAOB  (Q1KLX4), CAP18_RABIT (P25230), 
CRAMP_MOUSE (P51437), CTHL1_BOVIN (P22226), CTHL1_SHEEP (P54230), 
CTHL2_BOVIN (P19660), CTHL2_CAPHI (P82018), CTHL2_SHEEP (P79362), 
CTHL3_BOVIN (P19661), CTHL3_SHEEP (P50415), CTHL4_BOVIN (P33046), 
CTHL5_BOVIN (P54229), CTHL6_BOVIN (P54228), CTHL7_BOVIN (P56425), 
ICTL_PIG    (P15175), P15A_RABIT  (P26202), P15B_RABIT  (P26203), 
PF11_PIG    (P51524), PF12_PIG    (P51525), PG1_PIG     (P32194), 
PG2_PIG     (P32195), PG3_PIG     (P32196), PG4_PIG     (P49933), 
PG5_PIG     (P49934), PMP23_PIG   (P49930), PMP36_PIG   (P49931), 
PMP37_PIG   (P49932), PR39_PIG    (P80054), SC51_SHEEP  (P49928), 
SC52_SHEEP  (P49929)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CAMP_BUNFA  (B6D434), CAMP_NAJAT  (B6S2X0), CAMP_OPHHA  (B6S2X2), 
CTHB1_CHICK (Q5F378), CTHL1_CHICK (Q6QLQ5), CTHL2_CHICK (Q2IAL7), 
CTHL3_CHICK (Q2IAL6)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CTHL3_CAPHI (P85170)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1KWI; 1LXE; 1N5H; 1N5P; 4EYC;

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