Entry: PS00968

General information about the entry

Entry name [info] ANTENNA_COMP_ALPHA
Accession [info] PS00968
Entry type [info] PATTERN
Date [info] JUN-1994 (CREATED); JUL-1998 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00748

Name and characterization of the entry

Description [info] Antenna complexes alpha subunits signature.
Pattern [info]
[LIVFAG]-x-[GASV]-[LIVFA]-x-[IV]-H-x(3)-[LIVM]-[GSTAE]-[STANH]-x(1,3)-
[STN]-W-[LIVMFYW].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 32 in 32 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 94.12 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
32 sequences

LHA1_HALHL  (P80100), LHA1_HALHR  (P80102), LHA1_RHOAC  (P35089), 
LHA1_RHOCA  (P02948), LHA1_RHOPA  (P35101), LHA1_RHOS4  (Q3J1A4), 
LHA1_RHOSH  (P0C0X9), LHA1_RHOTE  (P80588), LHA1_RUBGE  (P0DJO0), 
LHA1_RUBGI  (I0HUL6), LHA2_HALHL  (P80101), LHA2_HALHR  (P80103), 
LHA2_RHOAC  (P35090), LHA2_RHOCA  (P07367), LHA2_RHOPA  (P35102), 
LHA2_RHOS4  (Q3J144), LHA2_RHOSH  (P0C0Y0), LHA2_RHOTE  (P80589), 
LHA3_HALHL  (P80107), LHA3_RHOAC  (P35091), LHA3_RHOPL  (P35103), 
LHA4_RHOAC  (P26789), LHA4_RHOPA  (P35104), LHA5_RHOPA  (P35105), 
LHA6_RHOAC  (P35092), LHA7_RHOAC  (P35093), LHA_AFIMA   (P80259), 
LHA_BLAVI   (P04123), LHA_CHLAA   (P07503), LHA_PHAMO   (P97253), 
LHA_RHORU   (P02947), LHA_ROSDO   (P26273)
» More

UniProtKB/Swiss-Prot
False negative sequences
2 sequences

LHA2_RHOSU  (P95655), LHA_RHOTE   (P80586)

		
PDB
[Detailed view]
6 PDB

1IJD; 1KZU; 1LGH; 1NKZ; 1XRD; 2FKW

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