PROSITE entry PS00968

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PURL: https://purl.expasy.org/prosite/signature/PS00968

Direct ScanProsite submission

General information about the entry

Entry name [info]	ANTENNA_COMP_ALPHA
Accession [info]	PS00968
Entry type [info]	PATTERN
Date [info]	01-JUN-1994 CREATED; 01-JUL-1998 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00748

Name and characterization of the entry

Description [info]	Antenna complexes alpha subunits signature.
Pattern [info]	[LIVFAG]-x-[GASV]-[LIVFA]-x-[IV]-H-x(3)-[LIVM]-[GSTAE]-[STANH]-x(1,3)- [STN]-W-[LIVMFYW].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	32 in 32 different sequences
Number of true positive hits	32 in 32 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	2
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	94.12 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

32 sequences

LHA1_CERS4  (Q3J1A4), LHA1_CERSP  (P0C0X9), LHA1_HALHL  (P80100),

LHA1_HALHR  (P80102), LHA1_RHOAC  (P35089), LHA1_RHOCA  (P02948), 
LHA1_RHOPA  (P35101), LHA1_RHOTE  (P80588), LHA1_RUBGE  (P0DJO0), 
LHA1_RUBGI  (I0HUL6), LHA2_CERS4  (Q3J144), LHA2_CERSP  (P0C0Y0), 
LHA2_HALHL  (P80101), LHA2_HALHR  (P80103), LHA2_RHOAC  (P35090), 
LHA2_RHOCA  (P07367), LHA2_RHOPA  (P35102), LHA2_RHOTE  (P80589), 
LHA3_HALHL  (P80107), LHA3_RHOAC  (P35091), LHA3_RHOPL  (P35103), 
LHA4_RHOAC  (P26789), LHA4_RHOPA  (P35104), LHA5_RHOPA  (P35105), 
LHA6_RHOAC  (P35092), LHA7_RHOAC  (P35093), LHA_AFIMA   (P80259), 
LHA_BLAVI   (P04123), LHA_CHLAA   (P07503), LHA_MAGML   (P97253), 
LHA_RHORU   (P02947), LHA_ROSDO   (P26273)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

2 sequences

LHA2_RHOSU  (P95655), LHA_RHOTE   (P80586)

PDB
[Detailed view]

31 PDB

pdb_00001ijd; pdb_00001kzu; pdb_00001lgh; pdb_00001nkz; pdb_00001xrd; pdb_00002fkw; pdb_00004v9g; pdb_00006et5; pdb_00007eqd; pdb_00007f0l; pdb_00007pbw; pdb_00007pil; pdb_00007tuw; pdb_00007tv3; pdb_00007va9; pdb_00007vb9; pdb_00007vnm; pdb_00007vny; pdb_00007vor; pdb_00007vot; pdb_00007voy; pdb_00007yml; pdb_00007zcu; pdb_00007zdi; pdb_00007ze3; pdb_00007ze8; pdb_00008b64; pdb_00008fb9; pdb_00008fbb; pdb_00008ydm; pdb_00009k3q
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