Entry: PS01014

General information about the entry
Entry name NUSG
Accession number PS01014
Entry type PATTERN
Date JUN-1994 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00775
Name and characterization of the entry
DescriptionTranscription termination factor nusG signature.
Pattern [LIVM]-F-G-[KRW]-x-T-P-[IV]-x-[LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 57 hits in 57 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 57 hits in 57 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 10
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 85.07 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
NUSG_AQUAE  (O67757), NUSG_BACHD  (Q9KGE7), NUSG_BACSU  (Q06795), 
NUSG_BORBU  (O51355), NUSG_BUCAI  (P57151), NUSG_BUCAP  (Q8KA65), 
NUSG_BUCBP  (Q89B15), NUSG_CAMJE  (Q9PI36), NUSG_DEIRA  (Q9RSS6), 
NUSG_ECO57  (P0AFG1), NUSG_ECOL6  (P0AA01), NUSG_ECOLI  (P0AFG0), 
NUSG_HAEIN  (P43916), NUSG_HELPJ  (Q9ZK20), NUSG_HELPY  (P55976), 
NUSG_LACLA  (Q9CDV7), NUSG_LIBAS  (P36262), NUSG_MYCBO  (P65590), 
NUSG_MYCLE  (Q9CBK0), NUSG_MYCTU  (P65589), NUSG_NEIMA  (P65591), 
NUSG_NEIMB  (P65592), NUSG_PASMU  (Q9CK84), NUSG_PSEAE  (Q9HWC4), 
NUSG_RICBR  (Q1RHC5), NUSG_RICCN  (Q92J91), NUSG_RICFE  (Q4UKC9), 
NUSG_RICPR  (P50056), NUSG_RICTY  (Q68XN3), NUSG_SALTI  (P0AA03), 
NUSG_SALTY  (P0AA02), NUSG_SHIFL  (P0AFG2), NUSG_STAA8  (Q2G0P2), 
NUSG_STAAC  (Q5HID9), NUSG_STAAE  (P0C1S3), NUSG_STAAM  (P0A095), 
NUSG_STAAN  (P0A096), NUSG_STAAR  (Q6GJD2), NUSG_STAAS  (Q6GBV1), 
NUSG_STAAW  (P0A097), NUSG_STACT  (P36264), NUSG_STAEQ  (Q5HRL6), 
NUSG_STAES  (Q8CQ85), NUSG_STRCO  (P36266), NUSG_STRGB  (P52852), 
NUSG_STRGR  (P36260), NUSG_STRVG  (P27309), NUSG_SYNY3  (P36265), 
NUSG_THEMA  (P29397), NUSG_THET8  (P35872), NUSG_TREPA  (O83264), 
NUSG_VIBCH  (Q9KV35), NUSG_VIBPA  (Q87KP9), NUSG_VIBVU  (Q8DD25), 
NUSG_XYLFA  (Q9PA81), NUSG_XYLFT  (Q87A27), NUSG_YERPE  (Q8ZAP0)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
NUSG_CHLMU  (Q9PK75), NUSG_CHLPN  (Q9Z9A5), NUSG_CHLTR  (O84322), 
NUSG_MYCGE  (P47300), NUSG_MYCPN  (P75049), NUSG_STRP1  (P68893), 
NUSG_STRP3  (P0DC78), NUSG_STRP6  (Q5XE43), NUSG_STRP8  (P68895), 
NUSG_STRPQ  (P0DC79)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1M1G; 1NPP; 1NPR; 1NZ9; 2JVV; 2KVQ; 2LQ8; 2XHC;

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