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Entry: PS01034

General information about the entry

Entry name [info] GH16_1
Accession [info] PS01034
Entry type [info] PATTERN
Date [info] 01-JUN-1994 CREATED; 01-DEC-2001 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00794
Associated ProRule [info] PRU10064

Name and characterization of the entry

Description [info] Glycosyl hydrolases family 16 active sites.
Pattern [info]
E-[LIV]-D-[LIVF]-x(0,1)-E-x(2)-[GQ]-[KRNF]-x-[PSTA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 56 in 56 different sequences
Number of true positive hits 44 in 44 different sequences
Number of 'unknown' hits 0
Number of false positive hits 12 in 12 different sequences
Number of false negative sequences 24
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 78.57 %
Recall (true positives / (true positives + false negatives)) 64.71 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] active_site at position 1
Site [info] active_site at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
44 sequences

AGAR_STRCO  (P07883    ), CGKA_PSEVC  (P43478    ), E13B_BACCI  (P23903    ), 
EXOK_RHIME  (P33693    ), GUB_BACAM   (P07980    ), GUB_BACLI   (P27051    ), 
GUB_BACSU   (P04957    ), GUB_BREBE   (P37073    ), GUB_CLOTH   (A3DBX3    ), 
GUB_CLOTM   (Q84C00    ), GUB_FIBSS   (P17989    ), GUB_PAEMA   (P23904    ), 
GUB_PAEPO   (P45797    ), GUB_RHOMR   (P45798    ), XTH12_ARATH (Q9FKL9    ), 
XTH13_ARATH (Q9FKL8    ), XTH14_ARATH (Q9ZSU4    ), XTH15_ARATH (Q38911    ), 
XTH16_ARATH (Q8LG58    ), XTH17_ARATH (O80803    ), XTH18_ARATH (Q9M0D2    ), 
XTH19_ARATH (Q9M0D1    ), XTH1_SOLLC  (Q40144    ), XTH1_SOYBN  (Q39857    ), 
XTH20_ARATH (Q9FI31    ), XTH21_ARATH (Q9ZV40    ), XTH22_ARATH (Q38857    ), 
XTH23_ARATH (Q38910    ), XTH24_ARATH (P24806    ), XTH25_ARATH (Q38907    ), 
XTH26_ARATH (Q9SVV2    ), XTH2_SOYBN  (P35694    ), XTH4_ARATH  (Q39099    ), 
XTH5_ARATH  (Q9XIW1    ), XTH6_ARATH  (Q8LF99    ), XTH7_ARATH  (Q8LER3    ), 
XTH8_ARATH  (Q8L9A9    ), XTH8_ORYSJ  (Q76BW5    ), XTHA_PHAAN  (Q41638    ), 
XTHB_PHAAN  (Q8LNZ5    ), XTH_BRAOB   (Q6YDN9    ), XTH_TOBAC   (P93349    ), 
XTH_WHEAT   (Q41542    ), XYND_RUMFL  (Q53317    )
» more

UniProtKB/Swiss-Prot
False negative sequences
24 sequences

AGB34_AGAAL (A8W969    ), CRF1_ASPFU  (Q8J0P4    ), CRF2_ASPFU  (Q4WI46    ), 
CRH1_YEAST  (P53301    ), CRH2_YEAST  (P32623    ), CRR1_ASHGO  (Q75A41    ), 
CRR1_YEAST  (Q05790    ), EGLC_RHIME  (Q9Z3Q2    ), EXSH_RHIME  (O33680    ), 
GUB_ORPSP   (O14412    ), XTH10_ARATH (Q9ZVK1    ), XTH11_ARATH (Q9SMP1    ), 
XTH1_ARATH  (Q9SV61    ), XTH27_ARATH (Q8LDS2    ), XTH28_ARATH (Q38909    ), 
XTH29_ARATH (Q8L7H3    ), XTH2_ARATH  (Q9SV60    ), XTH30_ARATH (Q38908    ), 
XTH31_ARATH (P93046    ), XTH32_ARATH (Q9SJL9    ), XTH33_ARATH (Q8LC45    ), 
XTH3_ARATH  (Q9LJR7    ), XTH9_ARATH  (Q8LDW9    ), YHZ7_SCHPO  (Q9USW3    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

AGA34_AGAAL (P85974    )

		
UniProtKB/Swiss-Prot
False positive sequences
12 sequences

ADCK1_XENTR (Q5M7P6    ), ADCK5_HUMAN (Q3MIX3    ), ADCK5_MOUSE (Q80V03    ), 
C7345_ORYSJ (Q8LIF2    ), C89A9_ARATH (Q9SRQ1    ), CATA_ASPFU  (P78574    ), 
HR78_DROME  (Q24142    ), MMS1_YEAST  (Q06211    ), MNMG_MYCMO  (Q6KID6    ), 
MYSP_BRUMA  (Q01202    ), MYSP_CAEEL  (P10567    ), MYSP_ONCVO  (Q02171    )
» more

PDB
[Detailed view]
21 PDB

1AJK; 1AJO; 1AXK; 1BYH; 1CPM; 1CPN; 1DYP; 1GBG; 1GLH; 1MAC; 1MVE; 1ZM1; 2AYH; 2R49; 3AXD; 3AXE; 3D6E; 3H0O; 3HR9; 3O5S; 3WVJ
» more

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