Entry: PS01034

General information about the entry
Entry name GLYCOSYL_HYDROL_F16
Accession number PS01034
Entry type PATTERN
Date JUN-1994 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00794
Associated ProRule PRU10064
Name and characterization of the entry
DescriptionGlycosyl hydrolases family 16 active sites.
Pattern E-[LIV]-D-[LIVF]-x(0,1)-E-x(2)-[GQ]-[KRNF]-x-[PSTA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 56 hits in 56 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 44 hits in 44 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 12 hits in 12 different sequences
  • Number of known missed hits: 24
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 78.57 %
  • Recall (true hits / (true hits + false negatives)): 64.71 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,active_site
  • `Interesting' site in the pattern: 6,active_site
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AGAR_STRCO  (P07883), BRU1_SOYBN  (P35694), CGKA_PSEVC  (P43478), 
E13B_BACCI  (P23903), EXOK_RHIME  (P33693), GUB_BACAM   (P07980), 
GUB_BACLI   (P27051), GUB_BACSU   (P04957), GUB_BREBE   (P37073), 
GUB_CLOTH   (A3DBX3), GUB_CLOTM   (Q84C00), GUB_FIBSS   (P17989), 
GUB_PAEMA   (P23904), GUB_PAEPO   (P45797), GUB_RHOMR   (P45798), 
XTH12_ARATH (Q9FKL9), XTH13_ARATH (Q9FKL8), XTH14_ARATH (Q9ZSU4), 
XTH15_ARATH (Q38911), XTH16_ARATH (Q8LG58), XTH17_ARATH (O80803), 
XTH18_ARATH (Q9M0D2), XTH19_ARATH (Q9M0D1), XTH1_SOLLC  (Q40144), 
XTH20_ARATH (Q9FI31), XTH21_ARATH (Q9ZV40), XTH22_ARATH (Q38857), 
XTH23_ARATH (Q38910), XTH24_ARATH (P24806), XTH25_ARATH (Q38907), 
XTH26_ARATH (Q9SVV2), XTH4_ARATH  (Q39099), XTH5_ARATH  (Q9XIW1), 
XTH6_ARATH  (Q8LF99), XTH7_ARATH  (Q8LER3), XTH8_ARATH  (Q8L9A9), 
XTH8_ORYSJ  (Q76BW5), XTHA_PHAAN  (Q41638), XTHB_PHAAN  (Q8LNZ5), 
XTH_BRAOB   (Q6YDN9), XTH_SOYBN   (Q39857), XTH_TOBAC   (P93349), 
XTH_WHEAT   (Q41542), XYND_RUMFL  (Q53317)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AGB34_AGAAL (A8W969), CRF1_ASPFU  (Q8J0P4), CRF2_ASPFU  (Q4WI46), 
CRH1_YEAST  (P53301), CRH2_YEAST  (P32623), CRR1_ASHGO  (Q75A41), 
CRR1_YEAST  (Q05790), EGLC_RHIME  (Q9Z3Q2), EXSH_RHIME  (O33680), 
GUB_ORPSP   (O14412), XTH10_ARATH (Q9ZVK1), XTH11_ARATH (Q9SMP1), 
XTH1_ARATH  (Q9SV61), XTH27_ARATH (Q8LDS2), XTH28_ARATH (Q38909), 
XTH29_ARATH (Q8L7H3), XTH2_ARATH  (Q9SV60), XTH30_ARATH (Q38908), 
XTH31_ARATH (P93046), XTH32_ARATH (Q9SJL9), XTH33_ARATH (Q8LC45), 
XTH3_ARATH  (Q9LJR7), XTH9_ARATH  (Q8LDW9), YHZ7_SCHPO  (Q9USW3)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
AGA34_AGAAL (P85974)
False positive hits (sequences which do not belong to the set under consideration):
ADCK1_XENTR (Q5M7P6), ADCK5_HUMAN (Q3MIX3), ADCK5_MOUSE (Q80V03), 
C7345_ORYSJ (Q8LIF2), C89A9_ARATH (Q9SRQ1), CATA_ASPFU  (P78574), 
HR78_DROME  (Q24142), MMS1_YEAST  (Q06211), MNMG_MYCMO  (Q6KID6), 
MYSP_BRUMA  (Q01202), MYSP_CAEEL  (P10567), MYSP_ONCVO  (Q02171)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AJK; 1AJO; 1AXK; 1BYH; 1CPM; 1CPN; 1DYP; 1GBG; 1GLH; 1MAC; 1MVE; 1ZM1; 2AYH; 2R49; 3AXD; 3AXE; 3D6E; 3H0O; 3HR9; 3O5S;

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