To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS01063

General information about the entry

Entry name [info] SIGMA70_ECF
Accession [info] PS01063
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED; 01-JUL-1998 DATA UPDATE; 27-SEP-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00814

Name and characterization of the entry

Description [info] Sigma-70 factors ECF subfamily signature.
Pattern [info]
[STAIV]-[PQDEL]-[DE]-[LIV]-[LIVTA]-Q-x-[STAV]-[LIVMFYC]-[LIVMAK]-x-
[GSTAIV]-[LIMFYWQ]-x(12,14)-[STAP]-[FYW]-[LIF]-x(2)-[IV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_09 which contains 555'594 sequence entries.


Total number of hits 42 in 42 different sequences
Number of true positive hits 42 in 42 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 18
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 70.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
42 sequences

CARQ_MYXXA  (Q06909    ), CNRH_CUPMC  (P37978    ), ECFG_RHOPT  (B3Q6P8    ), 
FECI_ECOLI  (P23484    ), HRPL_PSESY  (P37929    ), NCCH_ALCXX  (Q44583    ), 
RFAY_XANCP  (P46358    ), RPOE_ECO57  (P0AGB8    ), RPOE_ECOL6  (P0AGB7    ), 
RPOE_ECOLI  (P0AGB6    ), RPOE_HAEIN  (P44790    ), RPOE_SALT1  (D0ZSY9    ), 
RPOE_SALTI  (P0A2F1    ), RPOE_SALTY  (P0A2F0    ), RPOE_SHIFL  (P0AGB9    ), 
RPOE_STRAT  (O68887    ), RPOE_STRAW  (Q82EA9    ), RPOE_STRCO  (P38133    ), 
RPSC_MYCBO  (P66810    ), RPSC_MYCTO  (P9WGH0    ), RPSC_MYCTU  (P9WGH1    ), 
RPSD_MYCBO  (P66812    ), RPSD_MYCTO  (P9WGG8    ), RPSD_MYCTU  (P9WGG9    ), 
RPSH_PSEAE  (Q06198    ), SIGG_MYCTO  (P9WGG4    ), SIGG_MYCTU  (P9WGG5    ), 
SIGH_MYCBO  (P66808    ), SIGH_MYCS2  (A0QTP2    ), SIGH_MYCTO  (P9WGH8    ), 
SIGH_MYCTU  (P9WGH9    ), SIGL_MYCTE  (H8EXN1    ), SIGL_MYCTO  (P9WGH4    ), 
SIGL_MYCTU  (P9WGH5    ), SIGM_BACSU  (O07582    ), SIGR_STRCO  (Q7AKG9    ), 
SIGV_BACSU  (O05404    ), SIGW_BACSU  (Q45585    ), SIGX_BACSU  (P35165    ), 
SIGY_BACSU  (P94370    ), SIGZ_BACSU  (O05409    ), Y1459_HAEIN (P45215    )
» more

UniProtKB/Swiss-Prot
False negative sequences
18 sequences

RPOE_RHOS4  (Q3IYV6    ), SIGE_MYCS2  (A0R2D4    ), SIGE_MYCTE  (H8F0N6    ), 
SIGE_MYCTO  (P9WGG6    ), SIGE_MYCTU  (P9WGG7    ), SIGK_MYCBO  (Q7U1Z6    ), 
SIGK_MYCBP  (A1KFR7    ), SIGK_MYCSJ  (A3Q5U0    ), SIGK_MYCSK  (A1ULE1    ), 
SIGK_MYCSS  (Q1B3Q8    ), SIGK_MYCTA  (A5TZH1    ), SIGK_MYCTE  (H8EVT0    ), 
SIGK_MYCTO  (P9WGH6    ), SIGK_MYCTU  (P9WGH7    ), SIGK_MYCUA  (A0PNM4    ), 
SIGK_MYCVP  (A1TEV0    ), SIGM_MYCTE  (H8F2P4    ), SIGM_MYCTU  (O53590    )
» more

PDB
[Detailed view]
4 PDB

1H3L; 1OR7; 2O7G; 4CXF

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission