Entry: PS01063

General information about the entry

Entry name [info] SIGMA70_ECF
Accession [info] PS01063
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); JUL-1998 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00814

Name and characterization of the entry

Description [info] Sigma-70 factors ECF subfamily signature.
Pattern [info]
[STAIV]-[PQDEL]-[DE]-[LIV]-[LIVTA]-Q-x-[STAV]-[LIVMFYC]-[LIVMAK]-x-
[GSTAIV]-[LIMFYWQ]-x(12,14)-[STAP]-[FYW]-[LIF]-x(2)-[IV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 42 in 42 different sequences
Number of true positive hits 42 in 42 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 18
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 70.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
42 sequences

CARQ_MYXXA  (Q06909    ), CNRH_CUPMC  (P37978    ), ECFG_RHOPT  (B3Q6P8    ), 
FECI_ECOLI  (P23484    ), HRPL_PSESY  (P37929    ), NCCH_ALCXX  (Q44583    ), 
RFAY_XANCP  (P46358    ), RPOE_ECO57  (P0AGB8    ), RPOE_ECOL6  (P0AGB7    ), 
RPOE_ECOLI  (P0AGB6    ), RPOE_HAEIN  (P44790    ), RPOE_SALT1  (D0ZSY9    ), 
RPOE_SALTI  (P0A2F1    ), RPOE_SALTY  (P0A2F0    ), RPOE_SHIFL  (P0AGB9    ), 
RPOE_STRAT  (O68887    ), RPOE_STRAW  (Q82EA9    ), RPOE_STRCO  (P38133    ), 
RPSC_MYCBO  (P66810    ), RPSC_MYCTO  (P9WGH0    ), RPSC_MYCTU  (P9WGH1    ), 
RPSD_MYCBO  (P66812    ), RPSD_MYCTO  (P9WGG8    ), RPSD_MYCTU  (P9WGG9    ), 
RPSH_PSEAE  (Q06198    ), SIGG_MYCTO  (P9WGG4    ), SIGG_MYCTU  (P9WGG5    ), 
SIGH_MYCBO  (P66808    ), SIGH_MYCS2  (A0QTP2    ), SIGH_MYCTO  (P9WGH8    ), 
SIGH_MYCTU  (P9WGH9    ), SIGL_MYCTE  (H8EXN1    ), SIGL_MYCTO  (P9WGH4    ), 
SIGL_MYCTU  (P9WGH5    ), SIGM_BACSU  (O07582    ), SIGR_STRCO  (Q7AKG9    ), 
SIGV_BACSU  (O05404    ), SIGW_BACSU  (Q45585    ), SIGX_BACSU  (P35165    ), 
SIGY_BACSU  (P94370    ), SIGZ_BACSU  (O05409    ), Y1459_HAEIN (P45215    )
» more

UniProtKB/Swiss-Prot
False negative sequences
18 sequences

RPOE_RHOS4  (Q3IYV6    ), SIGE_MYCS2  (A0R2D4    ), SIGE_MYCTE  (H8F0N6    ), 
SIGE_MYCTO  (P9WGG6    ), SIGE_MYCTU  (P9WGG7    ), SIGK_MYCBO  (Q7U1Z6    ), 
SIGK_MYCBP  (A1KFR7    ), SIGK_MYCSJ  (A3Q5U0    ), SIGK_MYCSK  (A1ULE1    ), 
SIGK_MYCSS  (Q1B3Q8    ), SIGK_MYCTA  (A5TZH1    ), SIGK_MYCTE  (H8EVT0    ), 
SIGK_MYCTO  (P9WGH6    ), SIGK_MYCTU  (P9WGH7    ), SIGK_MYCUA  (A0PNM4    ), 
SIGK_MYCVP  (A1TEV0    ), SIGM_MYCTE  (H8F2P4    ), SIGM_MYCTU  (O53590    )
» more

PDB
[Detailed view]
4 PDB

1H3L; 1OR7; 2O7G; 4CXF

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