Entry: PS01063

General information about the entry
Entry name SIGMA70_ECF
Accession number PS01063
Entry type PATTERN
Date NOV-1995 (CREATED); JUL-1998 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00814
Name and characterization of the entry
DescriptionSigma-70 factors ECF subfamily signature.
Pattern [STAIV]-[PQDEL]-[DE]-[LIV]-[LIVTA]-Q-x-[STAV]-[LIVMFYC]-[LIVMAK]-x- [GSTAIV]-[LIMFYWQ]-x(12,14)-[STAP]-[FYW]-[LIF]-x(2)-[IV].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 30 hits in 30 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 30 hits in 30 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 10
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 75.00 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CARQ_MYXXA  (Q06909), CNRH_RALME  (P37978), FECI_ECOLI  (P23484), 
HRPL_PSESY  (P37929), NCCH_ALCXX  (Q44583), RFAY_XANCP  (P46358), 
RPOE_ECO57  (P0AGB8), RPOE_ECOL6  (P0AGB7), RPOE_ECOLI  (P0AGB6), 
RPOE_HAEIN  (P44790), RPOE_MYCBO  (P66808), RPOE_MYCTU  (P66807), 
RPOE_SALTI  (P0A2F1), RPOE_SALTY  (P0A2F0), RPOE_SHIFL  (P0AGB9), 
RPOE_STRAT  (O68887), RPOE_STRAW  (Q82EA9), RPOE_STRCO  (P38133), 
RPSC_MYCBO  (P66810), RPSC_MYCTU  (P66809), RPSD_MYCBO  (P66812), 
RPSD_MYCTU  (P66811), RPSH_PSEAE  (Q06198), SIGM_BACSU  (O07582), 
SIGV_BACSU  (O05404), SIGW_BACSU  (Q45585), SIGX_BACSU  (P35165), 
SIGY_BACSU  (P94370), SIGZ_BACSU  (O05409), Y1459_HAEIN (P45215)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
SIGK_MYCBO  (Q7U1Z6), SIGK_MYCBP  (A1KFR7), SIGK_MYCSJ  (A3Q5U0), 
SIGK_MYCSK  (A1ULE1), SIGK_MYCSS  (Q1B3Q8), SIGK_MYCTA  (A5TZH1), 
SIGK_MYCTU  (O53730), SIGK_MYCUA  (A0PNM4), SIGK_MYCVP  (A1TEV0), 
SIGM_MYCTU  (O53590)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1OR7; 2O7G;

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