Entry: PS01063

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General information about the entry

Entry name [info] SIGMA70_ECF
Accession [info] PS01063
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); JUL-1998 (DATA UPDATE); FEB-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00814

Name and characterization of the entry

Description [info] Sigma-70 factors ECF subfamily signature.
Pattern [info]
[STAIV]-[PQDEL]-[DE]-[LIV]-[LIVTA]-Q-x-[STAV]-[LIVMFYC]-[LIVMAK]-x-
[GSTAIV]-[LIMFYWQ]-x(12,14)-[STAP]-[FYW]-[LIF]-x(2)-[IV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_03 which contains 542'782 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 36 in 36 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 16
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 69.23 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
36 sequences

CARQ_MYXXA  (Q06909), CNRH_RALME  (P37978), FECI_ECOLI  (P23484), 
HRPL_PSESY  (P37929), NCCH_ALCXX  (Q44583), RFAY_XANCP  (P46358), 
RPOE_ECO57  (P0AGB8), RPOE_ECOL6  (P0AGB7), RPOE_ECOLI  (P0AGB6), 
RPOE_HAEIN  (P44790), RPOE_SALT1  (D0ZSY9), RPOE_SALTI  (P0A2F1), 
RPOE_SALTY  (P0A2F0), RPOE_SHIFL  (P0AGB9), RPOE_STRAT  (O68887), 
RPOE_STRAW  (Q82EA9), RPOE_STRCO  (P38133), RPSC_MYCBO  (P66810), 
RPSC_MYCTU  (P66809), RPSD_MYCBO  (P66812), RPSD_MYCTU  (P66811), 
RPSH_PSEAE  (Q06198), SIGG_MYCTU  (L7N5U5), SIGH_MYCBO  (P66808), 
SIGH_MYCS2  (A0QTP2), SIGH_MYCTU  (P66807), SIGL_MYCTE  (H8EXN1), 
SIGL_MYCTU  (Q7D9D4), SIGM_BACSU  (O07582), SIGR_STRCO  (Q7AKG9), 
SIGV_BACSU  (O05404), SIGW_BACSU  (Q45585), SIGX_BACSU  (P35165), 
SIGY_BACSU  (P94370), SIGZ_BACSU  (O05409), Y1459_HAEIN (P45215)
» More

UniProtKB/Swiss-Prot
False negative sequences
16 sequences

RPOE_RHOS4  (Q3IYV6), SIGE_MYCS2  (A0R2D4), SIGE_MYCTE  (H8F0N6), 
SIGE_MYCTU  (O06289), SIGK_MYCBO  (Q7U1Z6), SIGK_MYCBP  (A1KFR7), 
SIGK_MYCSJ  (A3Q5U0), SIGK_MYCSK  (A1ULE1), SIGK_MYCSS  (Q1B3Q8), 
SIGK_MYCTA  (A5TZH1), SIGK_MYCTE  (H8EVT0), SIGK_MYCTU  (O53730), 
SIGK_MYCUA  (A0PNM4), SIGK_MYCVP  (A1TEV0), SIGM_MYCTE  (H8F2P4), 
SIGM_MYCTU  (O53590)
» More

PDB
[Detailed view]
3 PDB

1H3L; 1OR7; 2O7G

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