Entry: PS01066

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General information about the entry

Entry name [info] UPP_SYNTHASE
Accession [info] PS01066
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00817

Name and characterization of the entry

Description [info] Undecaprenyl pyrophosphate synthase family signature.
Pattern [info]
[DEH]-[LIVMF]-[LIVMFC]-[LIVMF]-R-[STPV]-[SGAC]-[GEN]-x(1,2)-R-x-S-x-[FY]-
[LMFV]-[LIPMVT]-[YWL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 214 in 214 different sequences
Number of true positive hits 214 in 214 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.17 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
214 sequences

CRIT_STRCO  (Q9ACU1), DDPS1_ARATH (O80458), DDPS2_ARATH (Q56Y11), 
DDPS3_ARATH (Q8RX73), DDPS4_ARATH (Q8GY03), DDPS5_ARATH (Q570Q8), 
DDPS6_ARATH (Q8S2T1), DDPS7_ARATH (Q8LED0), DDPS8_ARATH (Q8LAR7), 
DHDDS_HUMAN (Q86SQ9), DHDDS_MOUSE (Q99KU1), DPDP_THEFY  (Q47RM6), 
DPDS_MYCBO  (P60478), DPDS_MYCLE  (P38119), DPDS_MYCS2  (A0R0S4), 
DPDS_MYCTO  (P9WFF6), DPDS_MYCTU  (P9WFF7), HRT2_HEVBR  (Q8W3U4), 
ISPT1_BRADU (Q89W41), ISPT1_CORDI (P60480), ISPT1_COREF (Q8FQR4), 
ISPT1_CORGL (P38118), ISPT1_NOSS1 (P58563), ISPT1_STRAW (Q82IC1), 
ISPT1_STRCO (Q9L2H4), ISPT1_TROW8 (Q83HR7), ISPT1_TROWT (Q83GJ0), 
ISPT2_BRADU (Q89KP7), ISPT2_CORDI (P60481), ISPT2_COREF (Q8FNG2), 
ISPT2_CORGL (Q8NNC1), ISPT2_NOSS1 (Q8YRL4), ISPT2_STRAW (Q82BS5), 
ISPT2_STRCO (Q9XA06), ISPT2_TROW8 (Q83HN8), ISPT2_TROWT (Q83GG2), 
ISPT_AGRT5  (Q8UFL9), ISPT_ANAVT  (Q9ZEJ7), ISPT_AQUAE  (O67291), 
ISPT_AQUPY  (Q8GLK9), ISPT_BACAN  (Q81WL2), ISPT_BACC1  (Q732P6), 
ISPT_BACCR  (Q819Y1), ISPT_BACHD  (Q9KA67), ISPT_BACHK  (Q6HEZ2), 
ISPT_BACSK  (Q5WFT2), ISPT_BACSU  (O31751), ISPT_BACTN  (Q8A1E0), 
ISPT_BIFLO  (Q8G7Y3), ISPT_BORBR  (Q7WJ90), ISPT_BORBU  (O51146), 
ISPT_BORPA  (Q7WA56), ISPT_BORPE  (Q7VYC6), ISPT_BRUAB  (Q57CY1), 
ISPT_BRUME  (Q8YHH3), ISPT_BRUSU  (Q8G0D9), ISPT_CAMJE  (Q9PP99), 
ISPT_CAMJR  (Q5HUX2), ISPT_CAUCR  (Q9A707), ISPT_CHLAB  (Q5L6U0), 
ISPT_CHLCV  (Q824H0), ISPT_CHLMU  (Q9PJU2), ISPT_CHLPN  (Q9Z7Y7), 
ISPT_CHLTE  (Q8KFQ5), ISPT_CHLTR  (O84456), ISPT_CHRVO  (Q7NVZ0), 
ISPT_CLOAB  (Q97I62), ISPT_CLOPE  (Q8XJQ9), ISPT_CLOTE  (Q895K8), 
ISPT_DEIRA  (Q9RRP1), ISPT_ENTFA  (Q831K9), ISPT_FUSNN  (Q8RE08), 
ISPT_GEOKA  (Q5L0J8), ISPT_GEOSL  (P60482), ISPT_GLOVI  (Q7NPE7), 
ISPT_HELHP  (Q7VH74), ISPT_HELMO  (Q8GDY3), ISPT_HELPJ  (Q9ZK05), 
ISPT_HELPY  (P55984), ISPT_LACAC  (Q5FJM7), ISPT_LACJO  (Q74IR9), 
ISPT_LACLA  (Q9CDT1), ISPT_LEPIC  (Q72U10), ISPT_LEPIN  (Q8F144), 
ISPT_LISIN  (Q92C39), ISPT_LISMF  (Q720A7), ISPT_LISMO  (Q8Y7G6), 
ISPT_MYCPF  (Q93AU4), ISPT_NEIG1  (Q5F5X2), ISPT_NEIMA  (Q9JX35), 
ISPT_NEIMB  (Q9K1G6), ISPT_NITEU  (Q82TZ9), ISPT_OCEIH  (Q8EQU9), 
ISPT_PORGI  (Q7MXJ4), ISPT_PROMA  (Q7VBI9), ISPT_PROMM  (Q7V6T7), 
ISPT_PROMP  (Q7V102), ISPT_RALSO  (Q8XZI7), ISPT_RHILO  (Q98MB9), 
ISPT_RHIME  (Q92Q51), ISPT_RHOBA  (Q7UF53), ISPT_RICBR  (Q1RII8), 
ISPT_RICCN  (Q92I30), ISPT_RICFE  (Q4ULR6), ISPT_RICPR  (Q9ZDA7), 
ISPT_RICSI  (Q7PBU9), ISPT_RICTY  (Q68WV4), ISPT_STAAC  (Q5HGH1), 
ISPT_STAAM  (P60476), ISPT_STAAN  (P60477), ISPT_STAAR  (Q6GHH5), 
ISPT_STAAS  (Q6G9V3), ISPT_STAAW  (Q8NWZ5), ISPT_STAEQ  (Q5HPT1), 
ISPT_STAES  (Q8CPG7), ISPT_STAHJ  (Q4L5W2), ISPT_STAS1  (Q49X45), 
ISPT_STRA3  (Q8E359), ISPT_STRA5  (Q8DXD5), ISPT_STRFR  (P20182), 
ISPT_STRMU  (Q8DSJ7), ISPT_STRP1  (Q99XY1), ISPT_STRP3  (P0DH32), 
ISPT_STRP6  (Q5X9U4), ISPT_STRP8  (Q8NZB2), ISPT_STRPN  (Q97SR4), 
ISPT_STRPQ  (P0DH33), ISPT_STRR6  (Q8DRB3), ISPT_STRT1  (Q5M1N6), 
ISPT_STRT2  (Q5M677), ISPT_SYNPX  (Q7U7P7), ISPT_SYNY3  (Q55482), 
ISPT_THEEB  (Q8DI29), ISPT_THEMA  (Q9X1B8), ISPT_THET2  (O87197), 
ISPT_THET8  (Q5SH15), ISPT_THETN  (Q8RA26), ISPT_TREDE  (Q73K76), 
ISPT_TREPA  (O83612), ISPT_WOLSU  (Q7M7V7), ISPT_ZYMMO  (Q9X5F1), 
NDPS_SOLLC  (C1K5M2), RER2_YEAST  (P35196), SRT1_YEAST  (Q03175), 
UPPS_ACIAD  (Q6FCH1), UPPS_AERPE  (Q9YC66), UPPS_ARCFU  (O29049), 
UPPS_BLOFL  (Q7VRE1), UPPS_BUCAI  (P57330), UPPS_BUCAP  (Q8K9S6), 
UPPS_BUCBP  (Q89AP0), UPPS_COXBU  (Q83BV5), UPPS_ECO57  (P60474), 
UPPS_ECOL6  (P60473), UPPS_ECOLI  (P60472), UPPS_FRATT  (Q5NHX6), 
UPPS_HAEDU  (Q7VM20), UPPS_HAEIN  (P44938), UPPS_HALMA  (Q5V1I1), 
UPPS_HALSA  (Q9HP68), UPPS_LACPL  (Q88VJ8), UPPS_LEGPA  (Q5X7N9), 
UPPS_LEGPH  (Q5ZY69), UPPS_LEGPL  (Q5WZ40), UPPS_METAC  (Q8TJQ7), 
UPPS_METJA  (Q58767), UPPS_METKA  (Q8TXA7), UPPS_METMA  (Q8PZ76), 
UPPS_METTH  (O26334), UPPS_MICLU  (O82827), UPPS_PASMU  (Q9CJL4), 
UPPS_PECAS  (Q6D8D8), UPPS_PHOLL  (Q7N8P2), UPPS_PHOPR  (Q6LN28), 
UPPS_PICTO  (Q6KZ89), UPPS_PSEAE  (Q9HXY2), UPPS_PSEPK  (Q88MH6), 
UPPS_PSESM  (Q886N9), UPPS_PYRAB  (Q9V157), UPPS_PYRAE  (Q8ZU54), 
UPPS_PYRFU  (Q8U0I8), UPPS_PYRHO  (O59258), UPPS_SALPA  (Q5PD68), 
UPPS_SALTI  (Q8Z9A5), UPPS_SALTY  (Q8ZRP2), UPPS_SHEON  (Q8EGH1), 
UPPS_SHIFL  (P60475), UPPS_SULAC  (Q9HH76), UPPS_SULSO  (Q980W4), 
UPPS_SULTO  (Q976K2), UPPS_THEAC  (Q9HKQ0), UPPS_THEKO  (Q5JGE1), 
UPPS_THEVO  (Q97B58), UPPS_VIBCH  (Q9KPV6), UPPS_VIBF1  (Q5E3E3), 
UPPS_VIBPA  (Q87ME1), UPPS_VIBVU  (Q8DBF7), UPPS_VIBVY  (Q7MIG4), 
UPPS_WIGBR  (Q8D2G7), UPPS_XANAC  (Q8PMK9), UPPS_XANCP  (Q8PAV7), 
UPPS_XANOR  (Q5H1E5), UPPS_XYLFA  (Q9PEH8), UPPS_XYLFT  (Q87EH7), 
UPPS_YERPE  (Q8ZH61), UPPS_YERPS  (Q667J4), YE54_SCHPO  (O14171), 
ZFPP_MYCBO  (Q7U0P8), ZFPP_MYCLE  (Q9CB36), ZFPP_MYCS2  (A0R2W4), 
ZFPP_MYCTO  (P9WFF4), ZFPP_MYCTU  (P9WFF5), ZFPP_THEFY  (Q47SS3), 
ZFPS_SOLHA  (B8XA40)
» More

UniProtKB/Swiss-Prot
False negative sequences
4 sequences

NGBR_DANRE  (Q6DHR8), NGBR_HUMAN  (Q96E22), NGBR_MOUSE  (Q99LJ8), 
RER2_ENCCU  (Q8SQJ8)
» More

PDB
[Detailed view]
35 PDB

1F75; 1JP3; 1UEH; 1V7U; 1X06; 1X07; 1X08; 1X09; 2D2R; 2DTN; 2E98; 2E99; 2E9A; 2E9C; 2E9D; 2VFW; 2VG0; 2VG1; 2VG2; 2VG3; 2VG4; 3QAS; 3SGT; 3SGV; 3SGX; 3SH0; 3TH8; 3UGS; 4H2J; 4H2M; 4H2O; 4H38; 4H3A; 4H3C; 4H8E
» More

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