Entry: PS01066

General information about the entry
Entry name UPP_SYNTHASE
Accession number PS01066
Entry type PATTERN
Date NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00817
Name and characterization of the entry
DescriptionUndecaprenyl pyrophosphate synthase family signature.
Pattern [DEH]-[LIVMF]-[LIVMFC]-[LIVMF]-R-[STPV]-[SGAC]-[GEN]-x(1,2)-R-x-S-x-[FY]- [LMFV]-[LIPMVT]-[YWL].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 212 hits in 212 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 212 hits in 212 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 98.15 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CRIT_STRCO  (Q9ACU1), DDPS1_ARATH (O80458), DDPS2_ARATH (Q56Y11), 
DDPS3_ARATH (Q8RX73), DDPS4_ARATH (Q8GY03), DDPS5_ARATH (Q570Q8), 
DDPS6_ARATH (Q8S2T1), DDPS7_ARATH (Q8LED0), DDPS8_ARATH (Q8LAR7), 
DHDDS_HUMAN (Q86SQ9), DHDDS_MOUSE (Q99KU1), DPDP_THEFY  (Q47RM6), 
DPDS_MYCBO  (P60478), DPDS_MYCLE  (P38119), DPDS_MYCS2  (A0R0S4), 
DPDS_MYCTU  (P60479), HRT2_HEVBR  (Q8W3U4), ISPT1_BRAJA (Q89W41), 
ISPT1_CORDI (P60480), ISPT1_COREF (Q8FQR4), ISPT1_CORGL (P38118), 
ISPT1_NOSS1 (P58563), ISPT1_STRAW (Q82IC1), ISPT1_STRCO (Q9L2H4), 
ISPT1_TROW8 (Q83HR7), ISPT1_TROWT (Q83GJ0), ISPT2_BRAJA (Q89KP7), 
ISPT2_CORDI (P60481), ISPT2_COREF (Q8FNG2), ISPT2_CORGL (Q8NNC1), 
ISPT2_NOSS1 (Q8YRL4), ISPT2_STRAW (Q82BS5), ISPT2_STRCO (Q9XA06), 
ISPT2_TROW8 (Q83HN8), ISPT2_TROWT (Q83GG2), ISPT_AGRT5  (Q8UFL9), 
ISPT_ANAVT  (Q9ZEJ7), ISPT_AQUAE  (O67291), ISPT_AQUPY  (Q8GLK9), 
ISPT_BACAN  (Q81WL2), ISPT_BACC1  (Q732P6), ISPT_BACCR  (Q819Y1), 
ISPT_BACHD  (Q9KA67), ISPT_BACHK  (Q6HEZ2), ISPT_BACSK  (Q5WFT2), 
ISPT_BACSU  (O31751), ISPT_BACTN  (Q8A1E0), ISPT_BIFLO  (Q8G7Y3), 
ISPT_BORBR  (Q7WJ90), ISPT_BORBU  (O51146), ISPT_BORPA  (Q7WA56), 
ISPT_BORPE  (Q7VYC6), ISPT_BRUAB  (Q57CY1), ISPT_BRUME  (Q8YHH3), 
ISPT_BRUSU  (Q8G0D9), ISPT_CAMJE  (Q9PP99), ISPT_CAMJR  (Q5HUX2), 
ISPT_CAUCR  (Q9A707), ISPT_CHLAB  (Q5L6U0), ISPT_CHLCV  (Q824H0), 
ISPT_CHLMU  (Q9PJU2), ISPT_CHLPN  (Q9Z7Y7), ISPT_CHLTE  (Q8KFQ5), 
ISPT_CHLTR  (O84456), ISPT_CHRVO  (Q7NVZ0), ISPT_CLOAB  (Q97I62), 
ISPT_CLOPE  (Q8XJQ9), ISPT_CLOTE  (Q895K8), ISPT_DEIRA  (Q9RRP1), 
ISPT_ENTFA  (Q831K9), ISPT_FUSNN  (Q8RE08), ISPT_GEOKA  (Q5L0J8), 
ISPT_GEOSL  (P60482), ISPT_GLOVI  (Q7NPE7), ISPT_HELHP  (Q7VH74), 
ISPT_HELMO  (Q8GDY3), ISPT_HELPJ  (Q9ZK05), ISPT_HELPY  (P55984), 
ISPT_LACAC  (Q5FJM7), ISPT_LACJO  (Q74IR9), ISPT_LACLA  (Q9CDT1), 
ISPT_LEPIC  (Q72U10), ISPT_LEPIN  (Q8F144), ISPT_LISIN  (Q92C39), 
ISPT_LISMF  (Q720A7), ISPT_LISMO  (Q8Y7G6), ISPT_MYCPF  (Q93AU4), 
ISPT_NEIG1  (Q5F5X2), ISPT_NEIMA  (Q9JX35), ISPT_NEIMB  (Q9K1G6), 
ISPT_NITEU  (Q82TZ9), ISPT_OCEIH  (Q8EQU9), ISPT_PORGI  (Q7MXJ4), 
ISPT_PROMA  (Q7VBI9), ISPT_PROMM  (Q7V6T7), ISPT_PROMP  (Q7V102), 
ISPT_RALSO  (Q8XZI7), ISPT_RHILO  (Q98MB9), ISPT_RHIME  (Q92Q51), 
ISPT_RHOBA  (Q7UF53), ISPT_RICBR  (Q1RII8), ISPT_RICCN  (Q92I30), 
ISPT_RICFE  (Q4ULR6), ISPT_RICPR  (Q9ZDA7), ISPT_RICSI  (Q7PBU9), 
ISPT_RICTY  (Q68WV4), ISPT_STAAC  (Q5HGH1), ISPT_STAAM  (P60476), 
ISPT_STAAN  (P60477), ISPT_STAAR  (Q6GHH5), ISPT_STAAS  (Q6G9V3), 
ISPT_STAAW  (Q8NWZ5), ISPT_STAEQ  (Q5HPT1), ISPT_STAES  (Q8CPG7), 
ISPT_STAHJ  (Q4L5W2), ISPT_STAS1  (Q49X45), ISPT_STRA3  (Q8E359), 
ISPT_STRA5  (Q8DXD5), ISPT_STRFR  (P20182), ISPT_STRMU  (Q8DSJ7), 
ISPT_STRP1  (Q99XY1), ISPT_STRP3  (P0DH32), ISPT_STRP6  (Q5X9U4), 
ISPT_STRP8  (Q8NZB2), ISPT_STRPN  (Q97SR4), ISPT_STRPQ  (P0DH33), 
ISPT_STRR6  (Q8DRB3), ISPT_STRT1  (Q5M1N6), ISPT_STRT2  (Q5M677), 
ISPT_SYNPX  (Q7U7P7), ISPT_SYNY3  (Q55482), ISPT_THEEB  (Q8DI29), 
ISPT_THEMA  (Q9X1B8), ISPT_THET2  (O87197), ISPT_THET8  (Q5SH15), 
ISPT_THETN  (Q8RA26), ISPT_TREDE  (Q73K76), ISPT_TREPA  (O83612), 
ISPT_WOLSU  (Q7M7V7), ISPT_ZYMMO  (Q9X5F1), NDPS_SOLLC  (C1K5M2), 
RER2_YEAST  (P35196), SRT1_YEAST  (Q03175), UPPS_ACIAD  (Q6FCH1), 
UPPS_AERPE  (Q9YC66), UPPS_ARCFU  (O29049), UPPS_BLOFL  (Q7VRE1), 
UPPS_BUCAI  (P57330), UPPS_BUCAP  (Q8K9S6), UPPS_BUCBP  (Q89AP0), 
UPPS_COXBU  (Q83BV5), UPPS_ECO57  (P60474), UPPS_ECOL6  (P60473), 
UPPS_ECOLI  (P60472), UPPS_ERWCT  (Q6D8D8), UPPS_FRATT  (Q5NHX6), 
UPPS_HAEDU  (Q7VM20), UPPS_HAEIN  (P44938), UPPS_HALMA  (Q5V1I1), 
UPPS_HALSA  (Q9HP68), UPPS_LACPL  (Q88VJ8), UPPS_LEGPA  (Q5X7N9), 
UPPS_LEGPH  (Q5ZY69), UPPS_LEGPL  (Q5WZ40), UPPS_METAC  (Q8TJQ7), 
UPPS_METJA  (Q58767), UPPS_METKA  (Q8TXA7), UPPS_METMA  (Q8PZ76), 
UPPS_METTH  (O26334), UPPS_MICLU  (O82827), UPPS_PASMU  (Q9CJL4), 
UPPS_PHOLL  (Q7N8P2), UPPS_PHOPR  (Q6LN28), UPPS_PICTO  (Q6KZ89), 
UPPS_PSEAE  (Q9HXY2), UPPS_PSEPK  (Q88MH6), UPPS_PSESM  (Q886N9), 
UPPS_PYRAB  (Q9V157), UPPS_PYRAE  (Q8ZU54), UPPS_PYRFU  (Q8U0I8), 
UPPS_PYRHO  (O59258), UPPS_PYRKO  (Q5JGE1), UPPS_SALPA  (Q5PD68), 
UPPS_SALTI  (Q8Z9A5), UPPS_SALTY  (Q8ZRP2), UPPS_SHEON  (Q8EGH1), 
UPPS_SHIFL  (P60475), UPPS_SULAC  (Q9HH76), UPPS_SULSO  (Q980W4), 
UPPS_SULTO  (Q976K2), UPPS_THEAC  (Q9HKQ0), UPPS_THEVO  (Q97B58), 
UPPS_VIBCH  (Q9KPV6), UPPS_VIBF1  (Q5E3E3), UPPS_VIBPA  (Q87ME1), 
UPPS_VIBVU  (Q8DBF7), UPPS_VIBVY  (Q7MIG4), UPPS_WIGBR  (Q8D2G7), 
UPPS_XANAC  (Q8PMK9), UPPS_XANCP  (Q8PAV7), UPPS_XANOR  (Q5H1E5), 
UPPS_XYLFA  (Q9PEH8), UPPS_XYLFT  (Q87EH7), UPPS_YERPE  (Q8ZH61), 
UPPS_YERPS  (Q667J4), YE54_SCHPO  (O14171), ZFPP_MYCBO  (Q7U0P8), 
ZFPP_MYCLE  (Q9CB36), ZFPP_MYCS2  (A0R2W4), ZFPP_MYCTU  (O53434), 
ZFPP_THEFY  (Q47SS3), ZFPS_SOLHA  (B8XA40)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
NGBR_DANRE  (Q6DHR8), NGBR_HUMAN  (Q96E22), NGBR_MOUSE  (Q99LJ8), 
RER2_ENCCU  (Q8SQJ8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1F75; 1JP3; 1UEH; 1V7U; 1X06; 1X07; 1X08; 1X09; 2D2R; 2DTN; 2E98; 2E99; 2E9A; 2E9C; 2E9D; 2H69; 2VFW; 2VG0; 2VG1; 2VG2; 2VG3; 2VG4; 3QAS; 3SGT; 3SGV; 3SGX; 3SH0; 3TH8; 3UGS; 4H2J; 4H2M; 4H2O; 4H38; 4H3A; 4H3C; 4H8E;

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