Entry: PS01067

General information about the entry
Entry name SECE_SEC61G
Accession number PS01067
Entry type PATTERN
Date NOV-1995 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00818
Name and characterization of the entry
DescriptionProtein secE/sec61-gamma signature.
Pattern [LIVMFY]-x-{D}-[DENQGA]-x-{E}-x(2)-[LIVMFTA]-x-[KRV]-x(2)-[KW]-P-x(3)- [SEQ]-x(5)-{D}-{CG}-[LIVT]-[LIVGA]-[LIVFGAST].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 80 hits in 80 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 72 hits in 72 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 8 hits in 8 different sequences
  • Number of known missed hits: 25
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 90.00 %
  • Recall (true hits / (true hits + false negatives)): 74.23 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
S61G1_ARATH (P0DI74), S61G1_DROME (Q9V668), S61G1_GRYOR (Q7Z1B8), 
S61G2_ARATH (P0DI75), S61G2_DROME (Q9VWE9), SC61G_BOVIN (Q3T104), 
SC61G_BRABE (Q962X7), SC61G_CAEEL (Q19967), SC61G_CANFA (P60058), 
SC61G_CIOIN (Q8I7D9), SC61G_DICDI (Q54JV6), SC61G_GADMO (Q7SZU9), 
SC61G_HARAN (Q7T207), SC61G_HUMAN (P60059), SC61G_MOUSE (P60060), 
SC61G_NEUCR (Q9C2D4), SC61G_ORYSJ (P38385), SC61G_SCHPO (Q09827), 
SC61G_XENLA (Q66KU2), SC61G_YEAST (P35179), SECE_BACHD  (Q9KGE8), 
SECE_BACLI  (P38381), SECE_BACSU  (Q06799), SECE_BUCAP  (Q8KA64), 
SECE_ECO57  (P0AG98), SECE_ECOL6  (P0AG97), SECE_ECOLI  (P0AG96), 
SECE_HAEIN  (P43805), SECE_METTH  (O27713), SECE_MYCBO  (P0A5Z1), 
SECE_MYCLE  (Q9CBJ9), SECE_MYCTU  (P0A5Z0), SECE_PSEAE  (Q9HWC3), 
SECE_PYRAB  (Q9V2S1), SECE_PYRHO  (P58199), SECE_PYRKO  (Q5JH32), 
SECE_RICBE  (Q8KTA9), SECE_RICBR  (Q1RHC4), SECE_RICCN  (Q92J92), 
SECE_RICFE  (Q4UKC8), SECE_RICMO  (Q8KTB5), SECE_RICPA  (Q7WWR6), 
SECE_RICPR  (P50054), SECE_RICRH  (Q8KHU8), SECE_RICRI  (Q8KTC0), 
SECE_RICSI  (Q7B6T4), SECE_RICTY  (Q68XN4), SECE_SALTI  (P0A2D4), 
SECE_SALTY  (P0A2D3), SECE_STAA8  (P0A0I4), SECE_STAAC  (Q5HIE0), 
SECE_STAAM  (P0A0I1), SECE_STAAN  (P0A0I2), SECE_STAAR  (Q6GJD3), 
SECE_STAAS  (Q6GBV2), SECE_STAAW  (P0A0I3), SECE_STACT  (P36253), 
SECE_STAEQ  (Q5HRL7), SECE_STAES  (Q8CQ86), SECE_STRCO  (P0A4G8), 
SECE_STRGB  (P52853), SECE_STRGR  (P36690), SECE_STRLI  (P0A4G9), 
SECE_STRVG  (P36691), SECE_SULAC  (P27340), SECE_SYNY3  (P38382), 
SECE_THEMA  (P35874), SECE_THEON  (B6YSX5), SECE_THET8  (P38383), 
SECE_TREPA  (O83263), SECE_VIBAL  (Q9ZNE7), SECE_VIBCH  (Q9KV36)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
S61G3_ARATH (Q9SMP2), SC61G_ENCCU (Q8SRW9), SECE_ARCFU  (O29714), 
SECE_BORBU  (O51356), SECE_BUCAI  (P57152), SECE_BUCBP  (Q89B14), 
SECE_HALLT  (B9LV21), SECE_HALMA  (Q5V456), SECE_HALS3  (B0R382), 
SECE_HALSA  (Q9HS72), SECE_HALWD  (Q18KS3), SECE_METAC  (Q8TI84), 
SECE_METBF  (Q46EU5), SECE_METBU  (Q12UQ2), SECE_METJA  (Q57817), 
SECE_METKA  (Q8TX54), SECE_METMA  (Q8PY55), SECE_METMP  (Q6LXB7), 
SECE_METS3  (A5UKV2), SECE_METS5  (A4YH85), SECE_METST  (Q2NEV8), 
SECE_NATPD  (Q3ITN6), SECE_PYRFU  (Q8TZK2), SECE_SULSO  (P58191), 
SECE_SULTO  (Q971I8)
False positive hits (sequences which do not belong to the set under consideration):
ALEX_HUMAN  (P84996), CRCB2_BACLD (Q65LX3), DBP3_ASHGO  (Q755A5), 
GLNE_MANSM  (Q65T25), LLPB_MACEU  (Q8SQ30), MMR1_YEAST  (Q06324), 
PSP24_XENLA (P79945), RLMM_CHRSD  (Q1QUU9)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
2AKH; 2AKI; 2WW9; 2WWA; 2WWB; 3J01;

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View entry in raw text format (no links)
Direct ScanProsite submission


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