Entry: PS01067

General information about the entry

Entry name [info] SECE_SEC61G
Accession [info] PS01067
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); APR-2006 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00818

Name and characterization of the entry

Description [info] Protein secE/sec61-gamma signature.
Pattern [info]
[LIVMFY]-x-{D}-[DENQGA]-x-{E}-x(2)-[LIVMFTA]-x-[KRV]-x(2)-[KW]-P-x(3)-
[SEQ]-x(5)-{D}-{CG}-[LIVT]-[LIVGA]-[LIVFGAST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 81 in 81 different sequences
Number of true positive hits 73 in 73 different sequences
Number of 'unknown' hits 0
Number of false positive hits 8 in 8 different sequences
Number of false negative sequences 29
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 90.12 %
Recall (true positives / (true positives + false negatives)) 71.57 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
73 sequences

S61G1_ARATH (P0DI74    ), S61G1_DROME (Q9V668    ), S61G1_GRYOR (Q7Z1B8    ), 
S61G2_ARATH (P0DI75    ), S61G2_DROME (Q9VWE9    ), SC61G_BOVIN (Q3T104    ), 
SC61G_BRABE (Q962X7    ), SC61G_CAEEL (Q19967    ), SC61G_CANLF (P60058    ), 
SC61G_CIOIN (Q8I7D9    ), SC61G_DICDI (Q54JV6    ), SC61G_GADMO (Q7SZU9    ), 
SC61G_HARAN (Q7T207    ), SC61G_HUMAN (P60059    ), SC61G_MOUSE (P60060    ), 
SC61G_NEUCR (Q9C2D4    ), SC61G_ORYSJ (P38385    ), SC61G_SCHPO (Q09827    ), 
SC61G_XENLA (Q66KU2    ), SC61G_YEAST (P35179    ), SECE_BACHD  (Q9KGE8    ), 
SECE_BACLI  (P38381    ), SECE_BACSU  (Q06799    ), SECE_BUCAP  (Q8KA64    ), 
SECE_ECO57  (P0AG98    ), SECE_ECOL6  (P0AG97    ), SECE_ECOLI  (P0AG96    ), 
SECE_HAEIN  (P43805    ), SECE_METTH  (O27713    ), SECE_MYCBO  (P0A5Z1    ), 
SECE_MYCLE  (Q9CBJ9    ), SECE_MYCTO  (P9WGN6    ), SECE_MYCTU  (P9WGN7    ), 
SECE_PSEAE  (Q9HWC3    ), SECE_PYRAB  (Q9V2S1    ), SECE_PYRHO  (P58199    ), 
SECE_RICBE  (Q8KTA9    ), SECE_RICBR  (Q1RHC4    ), SECE_RICCN  (Q92J92    ), 
SECE_RICFE  (Q4UKC8    ), SECE_RICMO  (Q8KTB5    ), SECE_RICPA  (Q7WWR6    ), 
SECE_RICPR  (P50054    ), SECE_RICRH  (Q8KHU8    ), SECE_RICRI  (Q8KTC0    ), 
SECE_RICSI  (Q7B6T4    ), SECE_RICTY  (Q68XN4    ), SECE_SALTI  (P0A2D4    ), 
SECE_SALTY  (P0A2D3    ), SECE_STAA8  (P0A0I4    ), SECE_STAAC  (Q5HIE0    ), 
SECE_STAAM  (P0A0I1    ), SECE_STAAN  (P0A0I2    ), SECE_STAAR  (Q6GJD3    ), 
SECE_STAAS  (Q6GBV2    ), SECE_STAAW  (P0A0I3    ), SECE_STACT  (P36253    ), 
SECE_STAEQ  (Q5HRL7    ), SECE_STAES  (Q8CQ86    ), SECE_STRCO  (P0A4G8    ), 
SECE_STRGB  (P52853    ), SECE_STRGR  (P36690    ), SECE_STRLI  (P0A4G9    ), 
SECE_STRVG  (P36691    ), SECE_SULAC  (P27340    ), SECE_SYNY3  (P38382    ), 
SECE_THEKO  (Q5JH32    ), SECE_THEMA  (P35874    ), SECE_THEON  (B6YSX5    ), 
SECE_THET8  (P38383    ), SECE_TREPA  (O83263    ), SECE_VIBAL  (Q9ZNE7    ), 
SECE_VIBCH  (Q9KV36    )
» more

UniProtKB/Swiss-Prot
False negative sequences
29 sequences

S61G3_ARATH (Q9SMP2    ), SC61G_ENCCU (Q8SRW9    ), SECE_ACIAM  (Q46493    ), 
SECE_AERPE  (P58198    ), SECE_AQUAE  (D0VWU4    ), SECE_ARCFU  (O29714    ), 
SECE_BORBU  (O51356    ), SECE_BUCAI  (P57152    ), SECE_BUCBP  (Q89B14    ), 
SECE_HALLT  (B9LV21    ), SECE_HALMA  (Q5V456    ), SECE_HALMT  (Q9V2S5    ), 
SECE_HALS3  (B0R382    ), SECE_HALSA  (Q9HS72    ), SECE_HALWD  (Q18KS3    ), 
SECE_METAC  (Q8TI84    ), SECE_METBF  (Q46EU5    ), SECE_METBU  (Q12UQ2    ), 
SECE_METJA  (Q57817    ), SECE_METKA  (Q8TX54    ), SECE_METMA  (Q8PY55    ), 
SECE_METMP  (Q6LXB7    ), SECE_METS3  (A5UKV2    ), SECE_METS5  (A4YH85    ), 
SECE_METST  (Q2NEV8    ), SECE_NATPD  (Q3ITN6    ), SECE_PYRFU  (Q8TZK2    ), 
SECE_SULSO  (P58191    ), SECE_SULTO  (Q971I8    )
» more

UniProtKB/Swiss-Prot
False positive sequences
8 sequences

ALEX_HUMAN  (P84996    ), CRCB2_BACLD (Q65LX3    ), DBP3_ASHGO  (Q755A5    ), 
GLNE_MANSM  (Q65T25    ), LLPB_MACEU  (Q8SQ30    ), MMR1_YEAST  (Q06324    ), 
PSP24_XENLA (P79945    ), RLMM_CHRSD  (Q1QUU9    )
» more

PDB
[Detailed view]
13 PDB

2AKH; 2AKI; 2WW9; 2WWA; 2WWB; 3JC2; 4CG5; 4CG6; 4CG7; 5A6U; 5AWW; 5CH4; 5GAE
» more

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