Entry: PS01090

General information about the entry
Entry name TATD_2
Accession number PS01090
Entry type PATTERN
Date NOV-1995 (CREATED); NOV-1995 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00836
Name and characterization of the entry
DescriptionTatD deoxyribonuclease family signature 2.
Pattern P-[LIVM]-x-[LIVM]-H-x-R-x-[TA]-x-[DE].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 26 hits in 26 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 22 hits in 22 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 4 hits in 4 different sequences
  • Number of known missed hits: 36
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 84.62 %
  • Recall (true hits / (true hits + false negatives)): 37.93 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
TATD2_HUMAN (Q93075), TATD_ECOLI  (P27859), TATD_ENT38  (A4WFX9), 
TATD_ENTCS  (E3G381), TATD_ERWAE  (D4ICL5), TATD_ERWBE  (D8MKW4), 
TATD_ERWT9  (B2VG45), TATD_ESCF3  (B7LTZ5), TATD_KLEP3  (B5XYH5), 
TATD_PANAM  (D4GGR2), TATD_PANSA  (E6WHK1), TATD_RAHSY  (E8XYF5), 
TATD_SALTY  (Q9L6M2), TATD_SHIF8  (Q0SZ31), TATD_YERPY  (B1JP69), 
Y017_UREPA  (Q9PRC8), Y081_HAEIN  (P44500), Y355_BUCAI  (P57436), 
Y454_HAEIN  (P44718), YABD_BACSU  (P37545), YBF5_YEAST  (P34220), 
YJJV_ECOLI  (P39408)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
TAT3A_XENLA (Q05AV0), TATD1_BOVIN (Q148G4), TATD1_DANRE (Q6GML7), 
TATD1_ENCCU (Q8SW70), TATD1_ENTBH (B7XJI2), TATD1_HUMAN (Q6P1N9), 
TATD1_MOUSE (Q6P8M1), TATD1_NOSCE (C4VAS3), TATD3_BOVIN (A1A4M4), 
TATD3_DANRE (Q503T5), TATD3_HUMAN (Q17R31), TATD3_MOUSE (Q3U1C6), 
TATD_CITK8  (A8ACY8), TATD_CITRI  (D2TUZ4), TATD_CROS8  (A7MQN1), 
TATD_CROTZ  (C9XTA5), TATD_DICD3  (E0SLH6), TATD_DICDC  (C6C4V4), 
TATD_EDWTE  (D0Z9R0), TATD_ERWCT  (Q6DAQ1), TATD_PANVC  (E1SKR8), 
TATD_PECCP  (C6DI71), TATD_PECWW  (D0KC77), TATD_SERP5  (A8G8C4), 
Y009_MYCGE  (P47255), Y009_MYCPN  (P78005), Y1582_METJA (Q58977), 
Y1664_HAEIN (P45305), Y1786_SYNY3 (P73335), Y325_BUCBP  (Q89AG7), 
Y343_BUCAP  (Q8K9J1), Y761_METJA  (Q58171), YCFH_ECO57  (P0AFQ9), 
YCFH_ECOL6  (P0AFQ8), YCFH_ECOLI  (P0AFQ7), YNF8_SCHPO  (Q9UUF1)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
YMES_GEOSE  (P23918)
False positive hits (sequences which do not belong to the set under consideration):
CL074_HUMAN (Q32Q52), GLGE_CORGL  (Q8NR39), TOF1_EMENI  (Q5AXH3), 
TOF1_PHANO  (Q0UJF3)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1XWY; 1ZZM;

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