Entry: PS01094

General information about the entry

Entry name [info] UPF0076
Accession [info] PS01094
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); JUL-1999 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00838

Name and characterization of the entry

Description [info] Uncharacterized protein family UPF0076 signature.
Pattern [info]
[PA]-[ASTPV]-R-[SACVF]-x-[LIVMFY]-x(2)-[GSAKR]-x-[LMVA]-x(5,8)-[LIVM]-
E-[MI].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 101 in 101 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits 0
Number of false positive hits 18 in 18 different sequences
Number of false negative sequences 27
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 82.18 %
Recall (true positives / (true positives + false negatives)) 75.45 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
83 sequences

ALDR_LACLA  (O34133    ), DFRA_MYXXA  (O52178    ), HMF1_YEAST  (P40037    ), 
MMF1_SCHPO  (O43003    ), MMF1_YEAST  (P40185    ), RIDA_ARATH  (Q94JQ4    ), 
RIDA_BACSU  (P37552    ), RIDA_ECOL6  (P0AF94    ), RIDA_ECOLI  (P0AF93    ), 
RIDA_PYRFU  (Q8U308    ), RIDA_SALTY  (Q7CP78    ), RIDA_SHIFL  (P0AF95    ), 
RUTC_CROS8  (A7ME54    ), RUTC_CROTZ  (C9Y0S5    ), RUTC_ECO10  (C8U5H2    ), 
RUTC_ECO1A  (C8UMM6    ), RUTC_ECO24  (A7ZKB5    ), RUTC_ECO26  (C8TNC0    ), 
RUTC_ECO27  (B7UNZ3    ), RUTC_ECO44  (D3H123    ), RUTC_ECO45  (B7MIF7    ), 
RUTC_ECO55  (B7LFC0    ), RUTC_ECO57  (Q8XAU5    ), RUTC_ECO7I  (B7NLB6    ), 
RUTC_ECO81  (B7MTF3    ), RUTC_ECO8A  (B7M8Z5    ), RUTC_ECOBD  (C6EHJ7    ), 
RUTC_ECOBR  (C6UFC1    ), RUTC_ECOBW  (C4ZQD8    ), RUTC_ECOCB  (D3QPK3    ), 
RUTC_ECOD1  (C9QZ66    ), RUTC_ECODH  (B1X9D1    ), RUTC_ECOHS  (A7ZYW5    ), 
RUTC_ECOK1  (A1A9R5    ), RUTC_ECOKI  (D5CZH0    ), RUTC_ECOL5  (Q0TJ57    ), 
RUTC_ECOL6  (P0AFQ6    ), RUTC_ECOLC  (B1IV87    ), RUTC_ECOLI  (P0AFQ5    ), 
RUTC_ECOLU  (B7N3G6    ), RUTC_ECOS5  (D2NGI7    ), RUTC_ECOSE  (B6I986    ), 
RUTC_ECOSM  (B1LIZ5    ), RUTC_ECOUT  (Q1RDK7    ), RUTC_ENT38  (A4W923    ), 
RUTC_ENTCC  (D5CE34    ), RUTC_KLEP3  (B5XXN2    ), RUTC_KLEP7  (A6T7A0    ), 
RUTC_KLEVT  (D3RKL2    ), RUTC_PANAM  (D4GEU6    ), RUTC_SHIDS  (Q32HQ1    ), 
RUTC_SHIF2  (D2AC41    ), RUTC_SHIF8  (Q0T624    ), RUTC_SHIFL  (Q83LK7    ), 
RUTC_YERE8  (A1JMX4    ), TDCF_ECOL6  (P0AGL3    ), TDCF_ECOLI  (P0AGL2    ), 
TDCF_SHIFL  (P0AGL4    ), UK114_BOVIN (Q3T114    ), UK114_CAPHI (P80601    ), 
UK114_HUMAN (P52758    ), UK114_MOUSE (P52760    ), UK114_RAT   (P52759    ), 
Y1251_PYRAB (Q9UZA3    ), Y142_LEUMC  (P97117    ), Y1466_PASMU (Q9L6B5    ), 
Y1627_HAEIN (P71394    ), Y3206_SULSO (Q97U19    ), Y322_HAEDU  (O30825    ), 
Y334_BUCBP  (Q89AG0    ), Y364_AQUAE  (O66689    ), Y4SK_RHISN  (P55654    ), 
Y709_SYNY3  (P52761    ), Y719_HAEIN  (P44839    ), Y811_SULTO  (Q973T6    ), 
Y854_PYRHO  (O58584    ), Y944_HELPJ  (Q9ZKQ6    ), Y944_HELPY  (O25598    ), 
YOAB_ECOL6  (P0AEB8    ), YOAB_ECOLI  (P0AEB7    ), YOAB_SHIFL  (P0AEB9    ), 
YSD2_CAEEL  (Q10121    ), YVN1_AZOVI  (P40431    )
» more

UniProtKB/Swiss-Prot
False negative sequences
27 sequences

DPH6_SCHPO  (Q9USQ7    ), DPH6_YEAST  (Q12429    ), MMF2_SCHPO  (Q9UR06    ), 
RUTC_ACIAD  (Q6FFZ5    ), RUTC_AGRFC  (Q7CWX2    ), RUTC_AGRRK  (B9JLT7    ), 
RUTC_AZOC5  (A8IAD2    ), RUTC_CAUCN  (B8H1Q2    ), RUTC_CAUCR  (Q9A4N4    ), 
RUTC_CAUSK  (B0SW61    ), RUTC_CAUST  (D5VGV2    ), RUTC_HALO1  (D0LI57    ), 
RUTC_METC4  (B7KWT5    ), RUTC_METEA  (C5B0U7    ), RUTC_METED  (C7CM34    ), 
RUTC_METEP  (A9W3H9    ), RUTC_METPB  (B1ZB17    ), RUTC_METRJ  (B1M5I6    ), 
RUTC_PSE14  (Q48MQ6    ), RUTC_PSEU2  (Q4ZXR9    ), RUTC_PSEU5  (A4VQH6    ), 
RUTC_SERP5  (A8GCT4    ), RUTC_VARPS  (C5CN81    ), UK114_CHICK (P83145    ), 
Y359_BUCAP  (Q8K9H7    ), Y371_BUCAI  (P57452    ), YJGH_ECOLI  (P39332    )
» more

UniProtKB/Swiss-Prot
False positive sequences
18 sequences

ATPFD_MYCLB (B8ZR39    ), ATPFD_MYCLE (P53006    ), CYF_PROM1   (A2C0R8    ), 
CYF_PROMT   (Q46GW2    ), PB2_I30A0   (P26113    ), PB2_I61A1   (B3EUR6    ), 
PB2_I67A2   (A8C8X3    ), PB2_I77AC   (P26114    ), SYE_BIFAA   (A0ZZS4    ), 
SYE_BIFLD   (B3DU87    ), SYE_BIFLO   (Q8G709    ), SYE_FRASN   (A8LCV4    ), 
SYE_PROAC   (Q6A6M1    ), SYE_STRAW   (Q82JR3    ), SYE_STRGG   (B1VZ06    ), 
SYE_THEYD   (B5YIG1    ), TRPE2_HALMA (Q5V213    ), TRPE_HALVD  (P33975    )
» more

PDB
[Detailed view]
15 PDB

1J7H; 1JD1; 1NQ3; 1ONI; 1QAH; 1QD9; 1QU9; 1X25; 2DYY; 2UYJ; 2UYK; 2UYN; 2UYP; 3QUW; 3V4D
» more

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