Entry: PS01103

General information about the entry
Entry name ASD
Accession number PS01103
Entry type PATTERN
Date NOV-1995 (CREATED); NOV-1995 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00847
Name and characterization of the entry
DescriptionAspartate-semialdehyde dehydrogenase signature.
Pattern [LIVM]-[SADN]-x(2)-C-x-R-[LIVM]-x(4)-[GSC]-H-[STA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 39 hits in 39 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 38 hits in 38 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 97.44 %
  • Recall (true hits / (true hits + false negatives)): 77.55 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
DHAS1_VIBCH (Q9KQG2), DHAS2_VIBCH (P23247), DHAS_ACTPL  (Q44151), 
DHAS_AQUAE  (O67716), DHAS_ARCFU  (O28766), DHAS_AZOVI  (P96198), 
DHAS_BACSU  (Q04797), DHAS_BORPE  (P41399), DHAS_BUCAI  (P57523), 
DHAS_BUCAP  (Q8K9B5), DHAS_BUCBP  (Q89AB8), DHAS_CAMJE  (Q59291), 
DHAS_CORFL  (P41400), DHAS_CORGL  (P0C1D8), DHAS_CORML  (P0C1D9), 
DHAS_ECO57  (P0A9R0), DHAS_ECOL6  (Q8FCR6), DHAS_ECOLI  (P0A9Q9), 
DHAS_HAEIN  (P44801), DHAS_HELPJ  (Q9ZK28), DHAS_HELPY  (O25801), 
DHAS_LEPIC  (Q75FC8), DHAS_LEPIN  (P41394), DHAS_METJA  (Q57658), 
DHAS_METTH  (O26890), DHAS_MYCBO  (P0A543), DHAS_MYCSM  (P41404), 
DHAS_MYCTU  (P0A542), DHAS_NEIMA  (P57008), DHAS_NEIMB  (P30903), 
DHAS_PSEAE  (Q51344), DHAS_SALTI  (P0A1F9), DHAS_SALTY  (P0A1F8), 
DHAS_SHIFL  (P0A9R1), DHAS_STRAK  (Q53612), DHAS_STRMU  (P10539), 
DHAS_VIBMI  (Q60080), DHAS_YEAST  (P13663)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
DHAS_LEGPN  (O31219), DHAS_PROMA  (P49420), DHAS_RICBR  (Q1RIB3), 
DHAS_RICCN  (Q92IJ0), DHAS_RICFE  (Q4UM57), DHAS_RICPR  (Q9ZDL2), 
DHAS_RICTY  (Q68X56), DHAS_SCHPO  (P78780), DHAS_SHESP  (Q56732), 
DHAS_SHEVD  (Q56734), DHAS_SYNY3  (Q55512)
False positive hits (sequences which do not belong to the set under consideration):
CYAA_LACKL  (P23466)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1BRM; 1GL3; 1MB4; 1MC4; 1NWC; 1NWH; 1NX6; 1OZA; 1PQP; 1PR3; 1PU2; 1Q2X; 1T4B; 1T4D; 1TA4; 1TB4; 1YS4; 2GUL; 2QZ9; 2R00; 3PZR; 3Q0E; 3TZ6; 3VOS;

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