Entry: PS01111

General information about the entry
Entry name RNA_POL_K_14KD
Accession number PS01111
Entry type PATTERN
Date NOV-1995 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00855
Name and characterization of the entry
DescriptionRNA polymerases K / 14 to 18 Kd subunits signature.
Pattern [ST]-x-[FY]-E-x-[AT]-R-x-[LIVM]-[GSA]-x-R-[SA]-x-Q.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 46 hits in 46 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 46 hits in 46 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 97.87 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RPAB2_BOVIN (Q32PE0), RPAB2_CAEBR (A8WSV7), RPAB2_CAEEL (Q17684), 
RPAB2_CRIGR (P61217), RPAB2_DICDI (Q54FA8), RPAB2_DROME (Q24320), 
RPAB2_HUMAN (P61218), RPAB2_MOUSE (P61219), RPAB2_PONAB (Q5R592), 
RPAB2_RAT   (O88828), RPAB2_SCHPO (P36595), RPAB2_YEAST (P20435), 
RPB6_ASFB7  (P42484), RPB6_ASFK5  (P0C9D9), RPB6_ASFM2  (P0C9D6), 
RPB6_ASFP4  (P0C9D7), RPB6_ASFWA  (P0C9D8), RPO6_ASFM2  (Q08399), 
RPOK_AERPE  (Q9YDJ9), RPOK_ARCFU  (O29134), RPOK_HALMA  (P29200), 
RPOK_HALS3  (B0R4Y7), RPOK_HALSA  (Q9HQJ0), RPOK_METAC  (Q8TT40), 
RPOK_METJA  (Q57650), RPOK_METLZ  (A2SSV2), RPOK_METMA  (Q8PW42), 
RPOK_METTH  (O26148), RPOK_METTP  (A0B6E6), RPOK_PICTO  (Q6L1M4), 
RPOK_PYRAB  (P62014), RPOK_PYRAE  (Q8ZTF9), RPOK_PYRFU  (Q8U0E8), 
RPOK_PYRHO  (P62015), RPOK_PYRKO  (Q5JJD0), RPOK_SULAC  (P39463), 
RPOK_SULIA  (C3N5H2), RPOK_SULIK  (C4KH38), RPOK_SULIM  (C3MUV8), 
RPOK_SULSO  (Q97ZJ9), RPOK_SULTO  (Q972B1), RPOK_THEAC  (Q9HJ14), 
RPOK_THEGJ  (C5A244), RPOK_THEON  (B6YSQ8), RPOK_THEPD  (A1RWX0), 
RPOK_THEVO  (P58232)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RPOK_HALLT  (B9LPW5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QKL; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or