Entry: PS01111

Forthcoming changes to the profile format
General information about the entry

Entry name [info] RNA_POL_K_14KD
Accession [info] PS01111
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); NOV-1997 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00855

Name and characterization of the entry

Description [info] RNA polymerases K / 14 to 18 Kd subunits signature.
Pattern [info]
[ST]-x-[FY]-E-x-[AT]-R-x-[LIVM]-[GSA]-x-R-[SA]-x-Q.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 48 in 48 different sequences
Number of true positive hits 48 in 48 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.96 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
48 sequences

RPAB2_BOVIN (Q32PE0), RPAB2_CAEBR (A8WSV7), RPAB2_CAEEL (Q17684), 
RPAB2_CRIGR (P61217), RPAB2_DICDI (Q54FA8), RPAB2_DROME (Q24320), 
RPAB2_HUMAN (P61218), RPAB2_MOUSE (P61219), RPAB2_PONAB (Q5R592), 
RPAB2_RAT   (O88828), RPAB2_SCHPO (P36595), RPAB2_YEAST (P20435), 
RPB6B_ARATH (Q9SJ96), RPB6_ASFB7  (P42484), RPB6_ASFK5  (P0C9D9), 
RPB6_ASFM2  (P0C9D6), RPB6_ASFP4  (P0C9D7), RPB6_ASFWA  (P0C9D8), 
RPD6A_ARATH (Q9FJ98), RPO6_ASFM2  (Q08399), RPOK_AERPE  (Q9YDJ9), 
RPOK_ARCFU  (O29134), RPOK_HALMA  (P29200), RPOK_HALS3  (B0R4Y7), 
RPOK_HALSA  (Q9HQJ0), RPOK_METAC  (Q8TT40), RPOK_METJA  (Q57650), 
RPOK_METLZ  (A2SSV2), RPOK_METMA  (Q8PW42), RPOK_METTH  (O26148), 
RPOK_METTP  (A0B6E6), RPOK_PICTO  (Q6L1M4), RPOK_PYRAB  (P62014), 
RPOK_PYRAE  (Q8ZTF9), RPOK_PYRFU  (Q8U0E8), RPOK_PYRHO  (P62015), 
RPOK_SULAC  (P39463), RPOK_SULIA  (C3N5H2), RPOK_SULIK  (C4KH38), 
RPOK_SULIM  (C3MUV8), RPOK_SULSO  (Q97ZJ9), RPOK_SULTO  (Q972B1), 
RPOK_THEAC  (Q9HJ14), RPOK_THEGJ  (C5A244), RPOK_THEKO  (Q5JJD0), 
RPOK_THEON  (B6YSQ8), RPOK_THEPD  (A1RWX0), RPOK_THEVO  (P58232)
» More

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

RPOK_HALLT  (B9LPW5)

		
PDB
[Detailed view]
106 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QKL; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission