To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS01111

General information about the entry

Entry name [info] RNA_POL_K_14KD
Accession [info] PS01111
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED; 01-NOV-1997 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00855

Name and characterization of the entry

Description [info] RNA polymerases K / 14 to 18 Kd subunits signature.
Pattern [info]
[ST]-x-[FY]-E-x-[AT]-R-x-[LIVM]-[GSA]-x-R-[SA]-x-Q.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 48 in 48 different sequences
Number of true positive hits 48 in 48 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.96 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
48 sequences

RPAB2_BOVIN (Q32PE0    ), RPAB2_CAEBR (A8WSV7    ), RPAB2_CAEEL (Q17684    ), 
RPAB2_CRIGR (P61217    ), RPAB2_DICDI (Q54FA8    ), RPAB2_DROME (Q24320    ), 
RPAB2_HUMAN (P61218    ), RPAB2_MOUSE (P61219    ), RPAB2_PONAB (Q5R592    ), 
RPAB2_RAT   (O88828    ), RPAB2_SCHPO (P36595    ), RPAB2_YEAST (P20435    ), 
RPB6B_ARATH (Q9SJ96    ), RPB6_ASFB7  (P42484    ), RPB6_ASFK5  (P0C9D9    ), 
RPB6_ASFM2  (P0C9D6    ), RPB6_ASFP4  (P0C9D7    ), RPB6_ASFWA  (P0C9D8    ), 
RPD6A_ARATH (Q9FJ98    ), RPO6_ASFM2  (Q08399    ), RPOK_AERPE  (Q9YDJ9    ), 
RPOK_ARCFU  (O29134    ), RPOK_HALMA  (P29200    ), RPOK_HALS3  (B0R4Y7    ), 
RPOK_HALSA  (Q9HQJ0    ), RPOK_METAC  (Q8TT40    ), RPOK_METJA  (Q57650    ), 
RPOK_METLZ  (A2SSV2    ), RPOK_METMA  (Q8PW42    ), RPOK_METTH  (O26148    ), 
RPOK_METTP  (A0B6E6    ), RPOK_PICTO  (Q6L1M4    ), RPOK_PYRAB  (P62014    ), 
RPOK_PYRAE  (Q8ZTF9    ), RPOK_PYRFU  (Q8U0E8    ), RPOK_PYRHO  (P62015    ), 
RPOK_SULAC  (P39463    ), RPOK_SULIA  (C3N5H2    ), RPOK_SULIK  (C4KH38    ), 
RPOK_SULIM  (C3MUV8    ), RPOK_SULSO  (Q97ZJ9    ), RPOK_SULTO  (Q972B1    ), 
RPOK_THEAC  (Q9HJ14    ), RPOK_THEGJ  (C5A244    ), RPOK_THEKO  (Q5JJD0    ), 
RPOK_THEON  (B6YSQ8    ), RPOK_THEPD  (A1RWX0    ), RPOK_THEVO  (P58232    )
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

RPOK_HALLT  (B9LPW5    )

		
PDB
[Detailed view]
138 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QKL; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5SVA
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission