Entry: PS01116

General information about the entry
Entry name XANTH_URACIL_PERMASE
Accession number PS01116
Entry type PATTERN
Date NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00860
Name and characterization of the entry
DescriptionXanthine/uracil permeases family signature.
Pattern [LIVM]-P-x-[PASIF]-V-[LIVMG]-[GF]-[GA]-x(4)-[LIVM]-[FY]-[GSA]-x-[LIVM]- x(3)-[GA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 27 hits in 27 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 27 hits in 27 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 24
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 52.94 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
PBUX_BACSU  (P42086), PUCJ_BACSU  (O32139), PUCK_BACSU  (O32140), 
PYRP_BACCL  (P41006), PYRP_BACSU  (P39766), RUTG_ECOLI  (P75892), 
S23A2_HUMAN (Q9UGH3), S23A2_MOUSE (Q9EPR4), S23A2_RAT   (Q9WTW8), 
S23A2_XENTR (B0JZG0), UACT_ECOLI  (Q46821), UAPA_EMENI  (Q07307), 
UAPC_EMENI  (P48777), URAA_ECO57  (P0AGM8), URAA_ECOLI  (P0AGM7), 
URAA_HAEIN  (P45117), URAA_PASMU  (Q9CPL9), XANP_ECO57  (P0AGN1), 
XANP_ECOL6  (P0AGN0), XANP_ECOLI  (P0AGM9), XANP_SHIFL  (P0AGN2), 
XANQ_ECO57  (P67446), XANQ_ECOL6  (P67445), XANQ_ECOLI  (P67444), 
Y397_CLOPE  (P50487), YI31_SCHPO  (Q9HE12), YWDJ_BACSU  (P39618)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LPE1_MAIZE  (Q41760), NAT10_ARATH (O04472), NAT11_ARATH (Q6SZ87), 
NAT12_ARATH (Q3E7D0), NAT1_ARATH  (Q9SHZ3), NAT2_ARATH  (Q94C70), 
NAT3_ARATH  (Q8GZD4), NAT4_ARATH  (P93039), NAT5_ARATH  (Q8RWE9), 
NAT6_ARATH  (Q27GI3), NAT7_ARATH  (Q0WPE9), NAT8_ARATH  (Q8VZQ5), 
NAT9_ARATH  (Q3E956), PBUG_BACSU  (O34987), PBUO_BACSU  (O34978), 
PURP_ECOLI  (P31466), Y125_HAEIN  (P44530), Y326_METJA  (Q57772), 
YBBY_ECOLI  (P77328), YGFQ_ECOLI  (Q46817), YICO_ECOLI  (P31440), 
YJCD_ECO57  (P0AF53), YJCD_ECOLI  (P0AF52), YOOH_SCHPO  (O94300)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 3QE7;

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