Entry: PS01117

General information about the entry

Entry name [info] HTH_MARR_1
Accession [info] PS01117
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); APR-2006 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00861

Name and characterization of the entry

Description [info] MarR-type HTH domain signature.
Pattern [info]
[STNAQ]-[LIAMV]-x(0,1)-[RNGSYKE]-x(4,5)-[LM]-[EIVLA]-x(2)-[GESD]-
[LFYWHA]-[LIVC]-x(7)-[DNS]-[RKQG]-[RK]-x(6)-[TS]-x(2)-[GAS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 122 in 122 different sequences
Number of true positive hits 122 in 122 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 66
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 64.89 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
122 sequences

BADR_RHOPA  (O07458), EXPG_RHIME  (P96440), HCRR_THAAR  (O33817), 
HOSA_ECO11  (Q9F8R8), HOSA_ECO27  (P69782), HOSA_ECO57  (Q7ABA6), 
HOSA_ECOLX  (Q93CC3), HPCR_ECOLX  (P62573), HPCR_SHIFL  (P62574), 
HPR_BACA2   (A7Z311), HPR_BACAA   (C3P2U9), HPR_BACAC   (C3LCW8), 
HPR_BACAH   (A0RAQ6), HPR_BACAN   (Q81JG1), HPR_BACC0   (B7JCX5), 
HPR_BACC1   (Q73CB7), HPR_BACC2   (B7IKC1), HPR_BACC3   (C1EKG1), 
HPR_BACC4   (B7HG19), HPR_BACC7   (B7HZH8), HPR_BACCN   (A7GLZ1), 
HPR_BACCQ   (B9IT66), HPR_BACCR   (Q813W6), HPR_BACCZ   (Q63EV6), 
HPR_BACHD   (Q9KDM7), HPR_BACHK   (Q6HMB8), HPR_BACLD   (Q65LS8), 
HPR_BACP2   (A8FBL1), HPR_BACSK   (Q5WHU1), HPR_BACSU   (P11065), 
HPR_BACWK   (A9VI69), HPR_EXIS2   (B1YK88), HPR_GEOKA   (Q5L293), 
HPR_GEOSW   (C5D6L6), HPR_GEOTN   (A4IKT9), HPR_LYSSC   (B1HVK6), 
MARR_ECOLI  (P27245), MARR_SALTI  (P0A2T5), MARR_SALTY  (P0A2T4), 
MGRA_STAA8  (Q2G0B1), MGRA_STAAC  (Q5HHY2), MGRA_STAAM  (Q99VT5), 
MGRA_STAAN  (Q7A6X2), MGRA_STAAR  (Q6GIV6), MGRA_STAAS  (Q6GBE4), 
MGRA_STAAU  (P0C1S0), MGRA_STAAW  (Q7A1J9), MHQR_BACSU  (O31672), 
MPRA_ECO57  (P0ACS1), MPRA_ECOL6  (P0ACS0), MPRA_ECOLI  (P0ACR9), 
PAPX_ECOLX  (P42193), PECS_DICD3  (P42195), PETP_RHOCB  (P31078), 
PRSX_ECOL6  (P62089), PRSX_ECOLX  (P62088), SLYA_BLOFL  (Q7VR54), 
SLYA_BLOPB  (Q492T9), SLYA_ECO24  (A7ZMA4), SLYA_ECO27  (P0A4U5), 
SLYA_ECO45  (B7M9Z6), SLYA_ECO55  (B7L5J5), SLYA_ECO57  (P0A8W3), 
SLYA_ECO5E  (B5Z476), SLYA_ECO7I  (B7NTZ0), SLYA_ECO81  (B7MVC0), 
SLYA_ECO8A  (B7M0J9), SLYA_ECOBW  (C4ZYA5), SLYA_ECODH  (B1XFV4), 
SLYA_ECOHS  (A8A0I5), SLYA_ECOL6  (P0A4U4), SLYA_ECOLI  (P0A8W2), 
SLYA_ECOLU  (B7NB96), SLYA_ECOSM  (B1LEP4), SLYA_EDWI9  (C5BE36), 
SLYA_EDWTA  (Q9F6B2), SLYA_KLEP3  (B5XWN4), SLYA_PECAS  (Q6D5V7), 
SLYA_PECCC  (Q9RB09), SLYA_PECCP  (C6DK30), SLYA_SALCH  (P61090), 
SLYA_SALPA  (Q5PH01), SLYA_SALPC  (C0Q5T8), SLYA_SALPK  (B5BKC5), 
SLYA_SALTI  (P61091), SLYA_SALTY  (P40676), SLYA_SERMA  (Q9RA96), 
SLYA_SERP5  (A8GDX5), SLYA_SHIB3  (B2U2E2), SLYA_SHIFL  (P0A8W4), 
SLYA_SODGM  (Q2NT07), SLYA_WIGBR  (Q8D2L8), SLYA_YERE8  (A1JNY1), 
SLYA_YEREN  (Q9S3W0), SLYA_YERP3  (A7FHL4), SLYA_YERPA  (Q1C786), 
SLYA_YERPE  (P69988), SLYA_YERPG  (A9QZA1), SLYA_YERPN  (Q1CIM0), 
SLYA_YERPP  (A4TIR6), SLYA_YERPS  (P69989), SLYA_YERPY  (B1JJ73), 
Y2060_STAAN (P62087), Y2140_MYCLE (O33060), Y2155_STAAS (Q6G757), 
Y2183_STAAW (Q8NVA6), Y2256_STAAC (Q5HDU4), Y2265_STAAM (P62086), 
Y2349_STAAR (Q6GEG9), Y2887_MYCTO (P9WME8), Y2887_MYCTU (P9WME9), 
Y2911_MYCBO (P67748), Y880_MYCTO  (P9WMF0), Y880_MYCTU  (P9WMF1), 
Y904_MYCBO  (P67746), YETL_BACSU  (O31541), YHJH_BACSU  (Q796S4), 
YKOM_BACSU  (O34949), YVMB_BACSU  (P40762), YWAE_BACSU  (P25150), 
YXAD_BACSU  (P42103), YYBA_BACSU  (P37503)
» More

UniProtKB/Swiss-Prot
False negative sequences
66 sequences

ADCR_STRP2  (Q04I02), ADCR_STRP6  (Q5XEA3), MEXR_PSEAE  (P52003), 
MMPR5_MYCTU (I6Y8F7), NICR_PSEPK  (Q88FY0), OHRR_BACSU  (O34777), 
SARZ_STAA3  (Q2FEB2), SARZ_STAA8  (Q2FVN3), SARZ_STAAB  (Q2YZ47), 
SARZ_STAAC  (Q5HDG9), SARZ_STAAM  (Q99RP3), SARZ_STAAN  (Q7A3V0), 
SARZ_STAAR  (Q6GE46), SARZ_STAAS  (Q6G6T5), SARZ_STAAW  (Q8NV32), 
SARZ_STAEQ  (Q5HLK8), SARZ_STAES  (Q8CN77), SARZ_STAHJ  (Q4L8Q3), 
SARZ_STAS1  (Q49ZX3), SGRR_ECO57  (Q8XA02), SGRR_ECOK1  (A1A7B8), 
SGRR_ECOL5  (Q0TLR9), SGRR_ECOL6  (Q8FL80), SGRR_ECOLI  (P33595), 
SGRR_ECOUT  (Q1RGC7), SGRR_PECAS  (Q6D0F8), SGRR_PHOLL  (Q7N125), 
SGRR_SALCH  (Q57TF2), SGRR_SALPA  (Q5PDG5), SGRR_SALTI  (Q8Z9I4), 
SGRR_SALTY  (Q8ZRV0), SGRR_SHIBS  (Q326G6), SGRR_SHIDS  (Q32K24), 
SGRR_SHIF8  (Q0T8C8), SGRR_SHIFL  (Q83SP3), SGRR_SHISS  (Q3Z5U2), 
SGRR_YERE8  (A1JJG7), SGRR_YERPA  (Q1C1Y8), SGRR_YERPE  (Q74Q56), 
SGRR_YERPN  (Q1CMQ0), SGRR_YERPP  (A4TQA7), SGRR_YERPS  (Q66EM6), 
SLYA_PHOLL  (Q8KM02), TCAR_STAAC  (Q9F4G3), TCAR_STAAE  (A6QJJ8), 
Y1720_BACAH (A0RCV1), Y1758_BACCZ (Q63CL4), Y1775_BACHK (Q6HK19), 
Y1936_BACCR (Q81EN2), Y1941_BACAN (Q81RU6), Y2019_BACC1 (Q739W8), 
YBFA_BACSU  (O31443), YCGE_BACSU  (O31472), YDCH_BACSU  (P96625), 
YDGG_BACSU  (P96705), YDGJ_BACSU  (P96708), YFIV_BACSU  (O31564), 
YHBI_BACSU  (O31592), YHJP_BACSU  (O07570), YPOP_BACSU  (P54182), 
YSMB_BACSU  (P97247), YUSO_BACSU  (O32181), YVNA_BACSU  (O34692), 
YWHA_BACSU  (P70993), YWOH_BACSU  (P94578), ZITR_LACLM  (A2RNS2)
» More

PDB
[Detailed view]
11 PDB

1JGS; 2FXA; 3Q5F; 3VB2; 3VOD; 3VOE; 4AIJ; 4AIK; 4EM0; 4EM1; 4EM2

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