Entry: PS01117

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General information about the entry

Entry name [info] HTH_MARR_1
Accession [info] PS01117
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); APR-2006 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00861

Name and characterization of the entry

Description [info] MarR-type HTH domain signature.
Pattern [info]
[STNAQ]-[LIAMV]-x(0,1)-[RNGSYKE]-x(4,5)-[LM]-[EIVLA]-x(2)-[GESD]-
[LFYWHA]-[LIVC]-x(7)-[DNS]-[RKQG]-[RK]-x(6)-[TS]-x(2)-[GAS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 122 in 122 different sequences
Number of true positive hits 122 in 122 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 65
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 65.24 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
122 sequences

BADR_RHOPA  (O07458), EXPG_RHIME  (P96440), HCRR_THAAR  (O33817), 
HOSA_ECO11  (Q9F8R8), HOSA_ECO27  (P69782), HOSA_ECO57  (Q7ABA6), 
HOSA_ECOLX  (Q93CC3), HPCR_ECOLX  (P62573), HPCR_SHIFL  (P62574), 
HPR_BACA2   (A7Z311), HPR_BACAA   (C3P2U9), HPR_BACAC   (C3LCW8), 
HPR_BACAH   (A0RAQ6), HPR_BACAN   (Q81JG1), HPR_BACC0   (B7JCX5), 
HPR_BACC1   (Q73CB7), HPR_BACC2   (B7IKC1), HPR_BACC3   (C1EKG1), 
HPR_BACC4   (B7HG19), HPR_BACC7   (B7HZH8), HPR_BACCN   (A7GLZ1), 
HPR_BACCQ   (B9IT66), HPR_BACCR   (Q813W6), HPR_BACCZ   (Q63EV6), 
HPR_BACHD   (Q9KDM7), HPR_BACHK   (Q6HMB8), HPR_BACLD   (Q65LS8), 
HPR_BACP2   (A8FBL1), HPR_BACSK   (Q5WHU1), HPR_BACSU   (P11065), 
HPR_BACWK   (A9VI69), HPR_EXIS2   (B1YK88), HPR_GEOKA   (Q5L293), 
HPR_GEOSW   (C5D6L6), HPR_GEOTN   (A4IKT9), HPR_LYSSC   (B1HVK6), 
MARR_ECOLI  (P27245), MARR_SALTI  (P0A2T5), MARR_SALTY  (P0A2T4), 
MGRA_STAA8  (Q2G0B1), MGRA_STAAC  (Q5HHY2), MGRA_STAAM  (Q99VT5), 
MGRA_STAAN  (Q7A6X2), MGRA_STAAR  (Q6GIV6), MGRA_STAAS  (Q6GBE4), 
MGRA_STAAU  (P0C1S0), MGRA_STAAW  (Q7A1J9), MHQR_BACSU  (O31672), 
MPRA_ECO57  (P0ACS1), MPRA_ECOL6  (P0ACS0), MPRA_ECOLI  (P0ACR9), 
PAPX_ECOLX  (P42193), PECS_DICD3  (P42195), PETP_RHOCB  (P31078), 
PRSX_ECOL6  (P62089), PRSX_ECOLX  (P62088), SLYA_BLOFL  (Q7VR54), 
SLYA_BLOPB  (Q492T9), SLYA_ECO24  (A7ZMA4), SLYA_ECO27  (P0A4U5), 
SLYA_ECO45  (B7M9Z6), SLYA_ECO55  (B7L5J5), SLYA_ECO57  (P0A8W3), 
SLYA_ECO5E  (B5Z476), SLYA_ECO7I  (B7NTZ0), SLYA_ECO81  (B7MVC0), 
SLYA_ECO8A  (B7M0J9), SLYA_ECOBW  (C4ZYA5), SLYA_ECODH  (B1XFV4), 
SLYA_ECOHS  (A8A0I5), SLYA_ECOL6  (P0A4U4), SLYA_ECOLI  (P0A8W2), 
SLYA_ECOLU  (B7NB96), SLYA_ECOSM  (B1LEP4), SLYA_EDWI9  (C5BE36), 
SLYA_EDWTA  (Q9F6B2), SLYA_KLEP3  (B5XWN4), SLYA_PECAS  (Q6D5V7), 
SLYA_PECCC  (Q9RB09), SLYA_PECCP  (C6DK30), SLYA_SALCH  (P61090), 
SLYA_SALPA  (Q5PH01), SLYA_SALPC  (C0Q5T8), SLYA_SALPK  (B5BKC5), 
SLYA_SALTI  (P61091), SLYA_SALTY  (P40676), SLYA_SERMA  (Q9RA96), 
SLYA_SERP5  (A8GDX5), SLYA_SHIB3  (B2U2E2), SLYA_SHIFL  (P0A8W4), 
SLYA_SODGM  (Q2NT07), SLYA_WIGBR  (Q8D2L8), SLYA_YERE8  (A1JNY1), 
SLYA_YEREN  (Q9S3W0), SLYA_YERP3  (A7FHL4), SLYA_YERPA  (Q1C786), 
SLYA_YERPE  (P69988), SLYA_YERPG  (A9QZA1), SLYA_YERPN  (Q1CIM0), 
SLYA_YERPP  (A4TIR6), SLYA_YERPS  (P69989), SLYA_YERPY  (B1JJ73), 
Y2060_STAAN (P62087), Y2140_MYCLE (O33060), Y2155_STAAS (Q6G757), 
Y2183_STAAW (Q8NVA6), Y2256_STAAC (Q5HDU4), Y2265_STAAM (P62086), 
Y2349_STAAR (Q6GEG9), Y2887_MYCTO (P9WME8), Y2887_MYCTU (P9WME9), 
Y2911_MYCBO (P67748), Y880_MYCTO  (P9WMF0), Y880_MYCTU  (P9WMF1), 
Y904_MYCBO  (P67746), YETL_BACSU  (O31541), YHJH_BACSU  (Q796S4), 
YKOM_BACSU  (O34949), YVMB_BACSU  (P40762), YWAE_BACSU  (P25150), 
YXAD_BACSU  (P42103), YYBA_BACSU  (P37503)
» More

UniProtKB/Swiss-Prot
False negative sequences
65 sequences

ADCR_STRP2  (Q04I02), ADCR_STRP6  (Q5XEA3), MEXR_PSEAE  (P52003), 
NICR_PSEPK  (Q88FY0), OHRR_BACSU  (O34777), SARZ_STAA3  (Q2FEB2), 
SARZ_STAA8  (Q2FVN3), SARZ_STAAB  (Q2YZ47), SARZ_STAAC  (Q5HDG9), 
SARZ_STAAM  (Q99RP3), SARZ_STAAN  (Q7A3V0), SARZ_STAAR  (Q6GE46), 
SARZ_STAAS  (Q6G6T5), SARZ_STAAW  (Q8NV32), SARZ_STAEQ  (Q5HLK8), 
SARZ_STAES  (Q8CN77), SARZ_STAHJ  (Q4L8Q3), SARZ_STAS1  (Q49ZX3), 
SGRR_ECO57  (Q8XA02), SGRR_ECOK1  (A1A7B8), SGRR_ECOL5  (Q0TLR9), 
SGRR_ECOL6  (Q8FL80), SGRR_ECOLI  (P33595), SGRR_ECOUT  (Q1RGC7), 
SGRR_PECAS  (Q6D0F8), SGRR_PHOLL  (Q7N125), SGRR_SALCH  (Q57TF2), 
SGRR_SALPA  (Q5PDG5), SGRR_SALTI  (Q8Z9I4), SGRR_SALTY  (Q8ZRV0), 
SGRR_SHIBS  (Q326G6), SGRR_SHIDS  (Q32K24), SGRR_SHIF8  (Q0T8C8), 
SGRR_SHIFL  (Q83SP3), SGRR_SHISS  (Q3Z5U2), SGRR_YERE8  (A1JJG7), 
SGRR_YERPA  (Q1C1Y8), SGRR_YERPE  (Q74Q56), SGRR_YERPN  (Q1CMQ0), 
SGRR_YERPP  (A4TQA7), SGRR_YERPS  (Q66EM6), SLYA_PHOLL  (Q8KM02), 
TCAR_STAAC  (Q9F4G3), TCAR_STAAE  (A6QJJ8), Y1720_BACAH (A0RCV1), 
Y1758_BACCZ (Q63CL4), Y1775_BACHK (Q6HK19), Y1936_BACCR (Q81EN2), 
Y1941_BACAN (Q81RU6), Y2019_BACC1 (Q739W8), YBFA_BACSU  (O31443), 
YCGE_BACSU  (O31472), YDCH_BACSU  (P96625), YDGG_BACSU  (P96705), 
YDGJ_BACSU  (P96708), YFIV_BACSU  (O31564), YHBI_BACSU  (O31592), 
YHJP_BACSU  (O07570), YPOP_BACSU  (P54182), YSMB_BACSU  (P97247), 
YUSO_BACSU  (O32181), YVNA_BACSU  (O34692), YWHA_BACSU  (P70993), 
YWOH_BACSU  (P94578), ZITR_LACLM  (A2RNS2)
» More

PDB
[Detailed view]
11 PDB

1JGS; 2FXA; 3Q5F; 3VB2; 3VOD; 3VOE; 4AIJ; 4AIK; 4EM0; 4EM1; 4EM2

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