Entry: PS01137

General information about the entry

Entry name [info] TATD_1
Accession [info] PS01137
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED; 01-DEC-2001 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00836

Name and characterization of the entry

Description [info] TatD deoxyribonuclease family signature 1.
Pattern [info] 
[LIVMFY](2)-D-[STA]-H-x-H-[LIVMFP]-[DN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 28 in 28 different sequences
Number of true positive hits 19 in 19 different sequences
Number of 'unknown' hits 0
Number of false positive hits 9 in 9 different sequences
Number of false negative sequences 32
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 67.86 %
Recall (true positives / (true positives + false negatives)) 37.25 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 19 sequences 

DTD3_SYNY3  (P73335    ), TATD2_HUMAN (Q93075    ), TATD_MYCTU  (O08343    ), 

Y009_MYCGE  (P47255    ), Y009_MYCPN  (P78005    ), Y017_UREPA  (Q9PRC8    ), 
Y081_HAEIN  (P44500    ), Y1664_HAEIN (P45305    ), Y325_BUCBP  (Q89AG7    ), 
Y343_BUCAP  (Q8K9J1    ), Y355_BUCAI  (P57436    ), Y454_HAEIN  (P44718    ), 
Y761_METJA  (Q58171    ), YABD_BACSU  (P37545    ), YCFH_ECO57  (P0AFQ9    ), 
YCFH_ECOL6  (P0AFQ8    ), YCFH_ECOLI  (P0AFQ7    ), YJJV_ECOLI  (P39408    ), 
YMES_GEOSE  (P23918    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 32 sequences 

TATD1_ENCCU (Q8SW70    ), TATD1_ENTBH (B7XJI2    ), TATD1_NOSCE (C4VAS3    ), 

TATD_CITK8  (A8ACY8    ), TATD_CITRI  (D2TUZ4    ), TATD_CROS8  (A7MQN1    ), 
TATD_CROTZ  (C9XTA5    ), TATD_DICD3  (E0SLH6    ), TATD_DICP7  (C6C4V4    ), 
TATD_ECOLI  (P27859    ), TATD_EDWTE  (D0Z9R0    ), TATD_ENT38  (A4WFX9    ), 
TATD_ENTLS  (E3G381    ), TATD_ERWAE  (D4ICL5    ), TATD_ERWBE  (D8MKW4    ), 
TATD_ERWT9  (B2VG45    ), TATD_ESCF3  (B7LTZ5    ), TATD_KLEP3  (B5XYH5    ), 
TATD_PANAM  (D4GGR2    ), TATD_PANSA  (E6WHK1    ), TATD_PANVC  (E1SKR8    ), 
TATD_PECAS  (Q6DAQ1    ), TATD_PECCP  (C6DI71    ), TATD_PECPW  (D0KC77    ), 
TATD_RAHSY  (E8XYF5    ), TATD_SALTY  (Q9L6M2    ), TATD_SERP5  (A8G8C4    ), 
TATD_SHIF8  (Q0SZ31    ), TATD_YERPY  (B1JP69    ), Y1582_METJA (Q58977    ), 
YBF5_YEAST  (P34220    ), YNF8_SCHPO  (Q9UUF1    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 9 sequences 

ADEC_LACDA  (Q1G825    ), ALLB_STRAW  (Q82LL4    ), ALLB_STRCO  (Q9RKU5    ), 

ALN1_DICDI  (Q54SV3    ), ALN2_DICDI  (Q55C91    ), ALN_YEAST   (P32375    ), 
ATZC_PSESD  (O52063    ), NOD2_MOUSE  (Q8K3Z0    ), RDRP_BMV    (P03594    )
» more

PDB
[Detailed view]		 2 PDB

1YIX; 1ZZM

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