Entry: PS01145

General information about the entry
Entry name RIBOSOMAL_L34E
Accession number PS01145
Entry type PATTERN
Date NOV-1995 (CREATED); DEC-2001 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00882
Name and characterization of the entry
DescriptionRibosomal protein L34e signature.
Pattern [ST]-x-S-x-[KRQ]-x(4)-[KR]-[TL]-P-[GS]-[GN].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 47 hits in 47 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 46 hits in 46 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 9
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 97.87 %
  • Recall (true hits / (true hits + false negatives)): 83.64 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RL341_ARATH (Q42351), RL342_ARATH (Q9FE65), RL343_ARATH (Q9LJW6), 
RL34A_SCHPO (O42846), RL34A_YEAST (P87262), RL34B_SCHPO (Q9URT8), 
RL34B_YEAST (P40525), RL34_AEDAL  (P45842), RL34_AEDTR  (Q9NB34), 
RL34_AERPE  (P58026), RL34_DANRE  (Q7ZWJ7), RL34_ENCCU  (Q8SSA2), 
RL34_HUMAN  (P49207), RL34_HYPBU  (A2BME5), RL34_ICTPU  (Q90YT5), 
RL34_METJA  (P54053), RL34_METKA  (Q8TZB2), RL34_METTH  (O26137), 
RL34_MOUSE  (Q9D1R9), RL34_PEA    (P40590), RL34_PIG    (Q29223), 
RL34_PYRAB  (Q9UZJ7), RL34_PYRAE  (Q8ZTJ2), RL34_PYRCJ  (A3MV68), 
RL34_PYRFU  (Q8U2L3), RL34_PYRHO  (O74006), RL34_PYRIL  (A1RRJ4), 
RL34_PYRKO  (Q5JJF7), RL34_PYRNV  (B1YAJ9), RL34_RAT    (P11250), 
RL34_STAMF  (A3DND2), RL34_SULAC  (O05981), RL34_SULIA  (C3N5V3), 
RL34_SULIK  (C4KHI2), RL34_SULIL  (C3MQ85), RL34_SULIM  (C3MVX7), 
RL34_SULIN  (C3NH83), RL34_SULIY  (C3NEG9), RL34_SULSO  (Q97ZQ6), 
RL34_SULTO  (Q975K6), RL34_TETTS  (P0DJ23), RL34_THEGJ  (C5A259), 
RL34_THEON  (B6YSP0), RL34_THEPD  (A1RXV1), RL34_THESM  (C6A186), 
RL34_TOBAC  (P41098)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RL34_DICDI  (Q54LV8), RL34_META3  (A6UW33), RL34_METM5  (A4FYK0), 
RL34_METM6  (A9A697), RL34_METM7  (A6VJT2), RL34_METMP  (Q6LZK0), 
RL34_METS3  (A5UL62), RL34_METST  (Q2NFY3), RL34_METVS  (A6USC2)
False positive hits (sequences which do not belong to the set under consideration):
CHO2_PARBA  (C1GZK1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 3IZS; 3J21; 3U5E; 3U5I; 4A18; 4A19; 4A1B; 4A1D; 4B6A;

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