Entry: PS01155

General information about the entry
Entry name ENDONUCLEASE_III_2
Accession number PS01155
Entry type PATTERN
Date NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00615
Name and characterization of the entry
DescriptionEndonuclease III family signature.
Pattern [GSTENA]-x-[LIVMF]-P-x(5)-[LIVMW]-x(2,3)-[LI]-[PAS]-G-[IV]-[GA]-x(3)- [GAC]-x(2,3)-[LIVMA]-x(1,2)-[GSALVI]-[LIVMFYW]-[GANKD].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 38 hits in 38 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 37 hits in 37 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 97.37 %
  • Recall (true hits / (true hits + false negatives)): 90.24 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
END3_BACSU  (P39788), END3_BUCAI  (P57219), END3_BUCAP  (Q8KA16), 
END3_BUCBP  (Q89AW4), END3_ECOL6  (P0AB84), END3_ECOLI  (P0AB83), 
END3_HAEIN  (P44319), END3_METJA  (Q58030), END3_MYCBO  (P63541), 
END3_MYCLE  (Q9CB92), END3_MYCTU  (P63540), END3_RICCN  (Q92GH4), 
END3_RICFE  (Q4UK93), END3_RICPR  (O05956), END3_RICTY  (Q68W04), 
END3_SYNY3  (P73715), END3_THEMA  (Q9WYK0), END3_TREPA  (O83754), 
GTMR_METTF  (P29588), MUTYH_HUMAN (Q9UIF7), MUTYH_MOUSE (Q99P21), 
MUTYH_RAT   (Q8R5G2), MUTY_BUCAI  (P57617), MUTY_BUCAP  (Q8K926), 
MUTY_BUCBP  (Q89A45), MUTY_ECOLI  (P17802), MUTY_HAEIN  (P44320), 
MUTY_SALTY  (Q05869), MYH1_SCHPO  (Q10159), NTG1_YEAST  (P31378), 
NTG2_YEAST  (Q08214), NTH1_CAEEL  (P54137), NTH1_SCHPO  (Q09907), 
NTHL1_BOVIN (Q2KID2), NTHL1_HUMAN (P78549), NTHL1_MOUSE (O35980), 
UVEN_MICLC  (P46303)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
MUTYH_ARATH (F4JRF4), NTH1_ENCCU  (Q8SRB8), Y1434_METJA (Q58829), 
YFHQ_BACSU  (O31584)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
MUTY_AERHY  (P46230)
False positive hits (sequences which do not belong to the set under consideration):
ELN_HUMAN   (P15502)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1KEA; 1KG2; 1KG3; 1KG4; 1KG5; 1KG6; 1KG7; 1KQJ; 1MUD; 1MUN; 1MUY; 1WEF; 1WEG; 1WEI; 2ABK; 3N5N;

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