Entry: PS01218

General information about the entry
Entry name TATC
Accession number PS01218
Entry type PATTERN
Date NOV-1997 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00936
Name and characterization of the entry
DescriptionTatC family signature.
Pattern Y-x(2)-[FL]-[LIVMAFNT]-[LIVMAFT]-x-[LVSI]-x(4)-[GASF]-x(2)-F-[EQ]- [LIVMFC]-P-[LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 34 hits in 34 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 34 hits in 34 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 15
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 69.39 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
TATCD_BACSU (P42252), TATCY_BACSU (O05523), TATC_AQUAE  (O67305), 
TATC_ARATH  (Q9SJV5), TATC_AZOCH  (P54085), TATC_BACHD  (Q9Z9P4), 
TATC_CAMJE  (Q9PHT8), TATC_CORK4  (C4LIK6), TATC_ECO57  (P69424), 
TATC_ECOL6  (Q8FBI6), TATC_ECOLI  (P69423), TATC_HAEIN  (P44560), 
TATC_HALNC  (D0KWI6), TATC_HELPJ  (Q9ZM59), TATC_HELPY  (O25701), 
TATC_KORVE  (Q1IN69), TATC_LISIN  (Q92ES8), TATC_MAGSM  (A0L833), 
TATC_MAIZE  (C4IZX0), TATC_MYCBO  (P66896), TATC_MYCLE  (P54078), 
TATC_MYCTU  (P66895), TATC_ORYSJ  (Q9AVE6), TATC_PEA    (Q94G17), 
TATC_RICPR  (Q9ZCG6), TATC_SYNY3  (P54086), YCF43_CYACA (Q9TLS5), 
YCF43_GRATL (Q6B8S9), YCF43_GUITH (O78493), YCF43_ODOSI (P49538), 
YCF43_PORPU (P51264), YCF43_PORYE (Q1XDM3), YMF16_NEPOL (Q9TC94), 
YMF16_RECAM (O21266)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
TATCO_HALVD (D4GZD0), TATCT_HALVD (D4GZC9), TATC_AKKM8  (B2UN92), 
TATC_BLASP  (D0J948), TATC_CARHZ  (Q3ADS0), TATC_CENSY  (A0RW14), 
TATC_DEHSV  (D2BJS8), TATC_DEIRA  (Q9RW63), TATC_DESAH  (C0QD59), 
TATC_FRASC  (Q2J9S4), TATC_PELCD  (Q3A8D5), TATC_RHOCB  (D5AT98), 
TATC_ROTMD  (D2NT99), TATC_UNCMA  (Q0W5V8), TATC_XYLCX  (D1BTU8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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