Entry: PS01229

General information about the entry

Entry name [info] COF_2
Accession [info] PS01229
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED; 01-NOV-1997 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00944

Name and characterization of the entry

Description [info] Hypothetical cof family signature 2.
Pattern [info] 
[LIVMFC]-G-D-[GSANQ]-x-N-D-x(3)-[LIMFY]-x(2)-[AV]-x(2)-[GSCP]-x(2)-
[LMP]-x(2)-[GAS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 138 in 138 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits 0
Number of false positive hits 55 in 55 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 60.14 %
Recall (true positives / (true positives + false negatives)) 92.22 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 83 sequences 

COF_CITK8   (A8AK07    ), COF_CROS8   (A7MFJ6    ), COF_ECO24   (A7ZIK4    ), 

COF_ECO27   (B7UJR9    ), COF_ECO45   (B7MDA5    ), COF_ECO55   (B7L683    ), 
COF_ECO57   (Q8XE50    ), COF_ECO5E   (B5Z3V4    ), COF_ECO7I   (B7NJ48    ), 
COF_ECO81   (B7MQG2    ), COF_ECO8A   (B7M3T9    ), COF_ECOBW   (C4ZTK3    ), 
COF_ECODH   (B1XFN4    ), COF_ECOHS   (A7ZXA4    ), COF_ECOK1   (A1A8B5    ), 
COF_ECOL5   (Q0TKJ5    ), COF_ECOL6   (Q8FKA2    ), COF_ECOLC   (B1IZE7    ), 
COF_ECOLI   (P46891    ), COF_ECOLU   (B7N900    ), COF_ECOSE   (B6HZQ3    ), 
COF_ECOSM   (B1LJK3    ), COF_ECOUT   (Q1RF89    ), COF_ENT38   (A4W7B7    ), 
COF_ESCF3   (B7LMD3    ), COF_KLEP3   (B5Y0T3    ), COF_KLEP7   (A6T5I9    ), 
COF_SALA4   (B5EXJ7    ), COF_SALAR   (A9MM14    ), COF_SALCH   (Q57SA6    ), 
COF_SALDC   (B5FKW1    ), COF_SALEP   (B5QU47    ), COF_SALG2   (B5R6V8    ), 
COF_SALHS   (B4T9F2    ), COF_SALNS   (B4SWV0    ), COF_SALPA   (Q5PFM4    ), 
COF_SALPB   (A9MWC0    ), COF_SALPK   (B5BD74    ), COF_SALSV   (B4TMD5    ), 
COF_SALTI   (Q8Z8U7    ), COF_SALTY   (Q8ZRB6    ), COF_SERP5   (A8GAR8    ), 
COF_SHIB3   (B2U4Q1    ), COF_SHIBS   (Q325F5    ), COF_SHIDS   (Q32JB1    ), 
COF_SHIF8   (Q0T7D7    ), COF_SHIFL   (Q83M49    ), COF_SHISS   (Q3Z4V2    ), 
COF_YERE8   (A1JNL2    ), COF_YERP3   (A7FLB5    ), COF_YERPA   (Q1C4L7    ), 
COF_YERPB   (B2K6W6    ), COF_YERPE   (Q7CK25    ), COF_YERPG   (A9QZP3    ), 
COF_YERPN   (Q1CL56    ), COF_YERPP   (A4TPD3    ), COF_YERPS   (Q66DS5    ), 
COF_YERPY   (B1JHR2    ), NTDB_BACSU  (O07565    ), SUPH_ECOLI  (P75792    ), 
Y003_HAEIN  (P44447    ), Y125_MYCGE  (P47371    ), Y263_MYCGE  (P47505    ), 
Y264_MYCPN  (P75511    ), Y265_MYCGE  (P47507    ), Y381_MYCPN  (P75401    ), 
Y383_MYCPN  (P75399    ), Y533_STRP6  (Q5XD45    ), Y597_HAEIN  (P44771    ), 
Y732_MYCCT  (P53661    ), YBHA_ECOLI  (P21829    ), YBJI_ECOLI  (P75809    ), 
YCSE_BACSU  (P42962    ), YIDA_ECOL6  (P0A8Y6    ), YIDA_ECOLI  (P0A8Y5    ), 
YIDA_SHIFL  (P0A8Y7    ), YIGL_ECO57  (Q8X8L6    ), YIGL_ECOLI  (P27848    ), 
YKRA_BACSU  (Q45494    ), YPDA_GEOSE  (P21878    ), YUPP_MYCHO  (P43051    ), 
YWPJ_BACSU  (P94592    ), YXEH_BACSU  (P54947    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

BPPI_STRP6  (Q5XAQ1    ), Y028_BUCAI  (P57140    ), Y029_BUCAP  (Q8KA73    ), 

Y030_BUCBP  (Q89B25    ), Y427_MYCPN  (P75360    ), YITU_BACSU  (P70947    ), 
YWTE_BACSU  (P96741    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 55 sequences 

AT132_HUMAN (Q9NQ11    ), AT132_MOUSE (Q9CTG6    ), ATC4_SCHPO  (O14072    ), 

ATC6_YEAST  (P39986    ), ATC9_SCHPO  (O74431    ), ATSY_SYNE7  (P37385    ), 
ATSY_SYNP6  (P07893    ), ATU2_SCHPO  (O59666    ), CADA_LISMN  (Q60048    ), 
CATP5_CAEEL (Q21286    ), COPA_ECO57  (Q8XD24    ), COPA_ECOLI  (Q59385    ), 
COPA_ENTHA  (P32113    ), COPA_SALTI  (Q8Z8S4    ), COPA_SALTY  (Q8ZR95    ), 
COPA_STAHJ  (Q4L970    ), COPA_VIBCH  (Q9KPZ7    ), COPA_YERPE  (Q8ZCA7    ), 
CTA5_SCHPO  (O14022    ), CTPB_MYCLE  (P46840    ), CTPC_MYCBO  (P0A503    ), 
CTPC_MYCLE  (Q9CCL1    ), CTPC_MYCTO  (P9WPT4    ), CTPC_MYCTU  (P9WPT5    ), 
CTPD_MYCS2  (A0R3A7    ), CTPJ_MYCTO  (P9WPT6    ), CTPJ_MYCTU  (P9WPT7    ), 
FIXI_BRADU  (Q59207    ), FIXI_RHILV  (O33533    ), FIXI_RHIME  (P18398    ), 
HMA2_ARATH  (Q9SZW4    ), HMA2_ORYSJ  (A3BF39    ), HMA3B_ARATH (P0CW78    ), 
HMA4_ARATH  (O64474    ), HMCT_HELFE  (Q9RQB4    ), HMCT_HELPJ  (Q9ZL53    ), 
HMCT_HELPY  (Q59465    ), KDPB_AGRFC  (Q8U9D9    ), KDPB_CAUCR  (Q9A7X7    ), 
KDPB_DEIRA  (Q9RZP0    ), KDPB_PSEAE  (P57698    ), KDPB_RHILO  (Q98GX6    ), 
KDPB_RHIME  (Q92XJ0    ), KDPB_THEAC  (P57700    ), KDPB_THEVO  (Q97BF6    ), 
KDPB_XANAC  (Q8PPC9    ), KDPB_XANCP  (Q8PCM1    ), PGP_AERPE   (Q9YE03    ), 
PGP_METKA   (Q8TYT9    ), Y290_HAEIN  (P77868    ), YH2M_CAEEL  (Q27533    ), 
YPK9_YEAST  (Q12697    ), ZNTA_ECOLI  (P37617    ), ZNTA_SHISS  (Q3YW59    ), 
ZOSA_BACSU  (O31688    )
» more

PDB
[Detailed view]		 4 PDB

1RLM; 1RLO; 1RLT; 3GYG

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