Entry: PS01241

General information about the entry
Entry name LINK_1
Accession number PS01241
Entry type PATTERN
Date FEB-1996 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00955
Name and characterization of the entry
DescriptionLink domain signature.
Pattern C-x(15)-A-x(3,4)-[GK]-x(3)-C-x(2)-G-x(8,9)-P-x(7)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 101 hits in 56 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 101 hits in 56 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 98.06 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 4
  • `Interesting' site in the pattern: 1,disulfide
  • `Interesting' site in the pattern: 7,disulfide
  • `Interesting' site in the pattern: 13,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CD44_BOVIN  (Q29423), CD44_CANFA  (Q28284), CD44_CRIGR  (P20944), 
CD44_HORSE  (Q05078), CD44_HUMAN  (P16070), CD44_MESAU  (Q60522), 
CD44_MOUSE  (P15379), CD44_PAPHA  (P14745), CD44_RAT    (P26051), 
CSPG2_BOVIN (P81282), CSPG2_CHICK (Q90953), CSPG2_HUMAN (P13611), 
CSPG2_MACNE (Q28858), CSPG2_MOUSE (Q62059), CSPG2_RAT   (Q9ERB4), 
HPLN1_BOVIN (P55252), HPLN1_CHICK (P07354), HPLN1_HORSE (Q28381), 
HPLN1_HUMAN (P10915), HPLN1_MOUSE (Q9QUP5), HPLN1_PIG   (P10859), 
HPLN1_RAT   (P03994), HPLN2_HUMAN (Q9GZV7), HPLN2_MOUSE (Q9ESM3), 
HPLN2_RAT   (Q9ESM2), HPLN3_HUMAN (Q96S86), HPLN3_MOUSE (Q80WM5), 
HPLN4_HUMAN (Q86UW8), HPLN4_MOUSE (Q80WM4), LYVE1_BOVIN (Q6UC88), 
LYVE1_MOUSE (Q8BHC0), NCAN_HUMAN  (O14594), NCAN_MOUSE  (P55066), 
NCAN_PANTR  (Q5IS41), NCAN_RAT    (P55067), PGCA_BOVIN  (P13608), 
PGCA_CANFA  (Q28343), PGCA_CHICK  (P07898), PGCA_HUMAN  (P16112), 
PGCA_MOUSE  (Q61282), PGCA_PIG    (Q29011), PGCA_RABIT  (Q28670), 
PGCA_RAT    (P07897), PGCB_BOVIN  (Q28062), PGCB_FELCA  (P41725), 
PGCB_HUMAN  (Q96GW7), PGCB_MOUSE  (Q61361), PGCB_RAT    (P55068), 
STAB1_HUMAN (Q9NY15), STAB1_MOUSE (Q8R4Y4), STAB2_HUMAN (Q8WWQ8), 
STAB2_MOUSE (Q8R4U0), STAB2_RAT   (Q8CFM6), TSG6_HUMAN  (P98066), 
TSG6_MOUSE  (O08859), TSG6_RABIT  (P98065)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LYVE1_HUMAN (Q9Y5Y7), SUSD5_HUMAN (O60279)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1O7B; 1O7C; 1POZ; 1UUH; 2I83; 2JCP; 2JCQ; 2JCR; 2PF5;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or