Entry: PS01267

General information about the entry
Entry name UPF0023
Accession number PS01267
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00974
Name and characterization of the entry
DescriptionUncharacterized protein family UPF0023 signature.
Pattern [DEN]-x(2)-[LIVF]-[DE](2)-[LIV]-L-x(4)-[IV]-[FY]-x(4)-K-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 17 hits in 17 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 17 hits in 17 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 94.44 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
SBDS_BOVIN  (Q3SWZ6), SBDS_CAEEL  (Q23202), SBDS_CHICK  (Q5ZIY4), 
SBDS_HUMAN  (Q9Y3A5), SBDS_MOUSE  (P70122), SBDS_PONAB  (Q5RAZ2), 
SBDS_RAT    (Q5RK30), SBDS_XENLA  (A5D8M6), SBDS_XENTR  (Q6DIT8), 
SDO1_AERPE  (Q9YCU5), SDO1_ARCFU  (O29759), SDO1_METJA  (Q58011), 
SDO1_METTH  (O26781), SDO1_PYRAB  (Q9V121), SDO1_PYRHO  (O59220), 
SDO1_SCHPO  (O14179), SDO1_YEAST  (Q07953)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
SBDS_DICDI  (Q86KZ5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1P9Q; 1T95; 2KDO; 2L9N; 2WBM;

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