Entry: PS01292

General information about the entry
Entry name UPF0036
Accession number PS01292
Entry type PATTERN
Date NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00994
Name and characterization of the entry
DescriptionUncharacterized protein family UPF0036 signature.
Pattern H-x-S-G-H-[GA]-x(3)-[DE]-x(3)-[LM]-x(5)-P-x(3)-[LIVM]-P-x-H-G-[DE].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 21 hits in 21 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 21 hits in 21 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 15
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 58.33 %
Comments
  • Taxonomic range: Archaea, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RNJ1_BACSU  (Q45493), RNJ1_STAA3  (Q2FHZ1), RNJ1_STAA8  (Q2FZG9), 
RNJ1_STAAB  (Q2YX35), RNJ1_STAAC  (Q5HGZ5), RNJ1_STAAM  (Q99V09), 
RNJ1_STAAN  (Q7A682), RNJ1_STAAR  (Q6GHZ6), RNJ1_STAAS  (Q6GAC5), 
RNJ1_STAAW  (Q7A171), RNJ1_STAEQ  (Q5HQ80), RNJ1_STAES  (Q8CT16), 
RNJ1_STAHJ  (Q4L5A3), RNJ1_STAS1  (Q49WL3), RNJ_CORGL   (P54122), 
RNJ_HELPJ   (Q9ZJI6), RNJ_HELPY   (P56185), RNJ_METJA   (Q58271), 
RNJ_MYCGE   (P47385), RNJ_MYCPN   (P75497), RNJ_SYNY3   (P54123)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RNJ2_BACSU  (O31760), RNJ2_STAA3  (Q2FHG3), RNJ2_STAA8  (Q2FZ19), 
RNJ2_STAAB  (Q2YXP1), RNJ2_STAAC  (Q5HGF6), RNJ2_STAAM  (Q99UJ7), 
RNJ2_STAAN  (Q7A5X6), RNJ2_STAAR  (Q6GHG0), RNJ2_STAAS  (Q6G9T8), 
RNJ2_STAAW  (Q7A115), RNJ2_STAEQ  (Q5HPR6), RNJ2_STAES  (Q8CST0), 
RNJ2_STAHJ  (Q4L5X8), RNJ2_STAS1  (Q49X63), Y2752_MYCTU (O33294)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 3ZQ4;

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