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Entry: PS01315
General information about the entry
Entry nameCDS
Accession numberPS01315
Entry typePATTERN
DateJUL-1998 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC01019
Name and characterization of the entry
DescriptionPhosphatidate cytidylyltransferase signature.
PatternS-x-[LIVMF]-K-R-x(4)-K-D-x-[GSA]-x(2)-[LIF]-[PGS]-x-H-G-G-[LIVMF]-x-D-R- [LIVMFT]-D.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 50 hits in 50 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 50 hits in 50 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 94.34 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
CDS1_ARATH  (O04928), CDS1_ENCCU  (Q95ZE3), CDS1_HUMAN  (Q92903), 
CDS1_MOUSE  (P98191), CDS1_RAT    (O35052), CDS1_SOLTU  (O04940), 
CDS1_YEAST  (P38221), CDS2_BOVIN  (A0JNC1), CDS2_HUMAN  (O95674), 
CDS2_MOUSE  (Q99L43), CDS2_RAT    (Q91XU8), CDSA_AQUAE  (O67292), 
CDSA_BACSU  (O31752), CDSA_BRUA2  (Q2YRP9), CDSA_BRUAB  (P0C102), 
CDSA_BRUME  (Q8YHH2), CDSA_BRUSU  (Q8G0E0), CDSA_CAEEL  (P53439), 
CDSA_DROME  (P56079), CDSA_ECO57  (P0ABG2), CDSA_ECOLI  (P0ABG1), 
CDSA_HAEIN  (P44937), CDSA_HELPJ  (Q9ZML7), CDSA_HELPY  (O25004), 
CDSA_MYCBO  (P63759), CDSA_MYCGE  (Q49433), CDSA_MYCLE  (Q9CBU1), 
CDSA_MYCPN  (P75160), CDSA_MYCTU  (P63758), CDSA_PSEAE  (Q59640), 
CDSA_RICBR  (Q1RII7), CDSA_RICCN  (Q92I31), CDSA_RICFE  (Q4ULR7), 
CDSA_RICPR  (Q9ZDA8), CDSA_RICTY  (Q68WV5), CDSA_SHIFL  (P0ABG3), 
CDSA_STAAC  (Q5HGH0), CDSA_STAAM  (Q99UL1), CDSA_STAAN  (Q7A5Y4), 
CDSA_STAAR  (Q6GHH4), CDSA_STAAS  (Q6G9V2), CDSA_STAAW  (Q7A121), 
CDSA_STAEQ  (Q5HPT0), CDSA_STAES  (Q8CST9), CDSA_STAHJ  (Q4L5W3), 
CDSA_STAS1  (Q49X46), CDSA_SYNY3  (P73548), CDSA_THEMA  (Q9X1B7), 
CDSH_SCHPO  (Q9P381), YNBB_ECOLI  (P76091)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CDSA_CHLMU  (Q9PJU1), CDSA_CHLPN  (Q9Z7Y6), CDSA_CHLTR  (O84457)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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