Entry: PS01332

General information about the entry

Entry name [info] HTH_RRF2_1
Accession [info] PS01332
Entry type [info] PATTERN
Date [info] JUL-1999 (CREATED); DEC-2001 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC01035

Name and characterization of the entry

Description [info] Rrf2-type HTH domain signature.
Pattern [info]
L-x(3)-[GRS]-[LIVY]-x(2)-[STA]-x(2)-G-x(2)-G-G-[FYIV]-x-[LIF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 138 in 138 different sequences
Number of true positive hits 137 in 137 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 20
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.28 %
Recall (true positives / (true positives + false negatives)) 87.26 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
137 sequences

AAU3_RHIME  (Q9R9M8    ), BADM_RHOPA  (O07465    ), CYMR_BACSU  (O34527    ), 
ISCR_ALISL  (B6EGX4    ), ISCR_CITK8  (A8AD51    ), ISCR_CROS8  (A7MGX6    ), 
ISCR_ECO24  (A7ZPX5    ), ISCR_ECO27  (B7UGX7    ), ISCR_ECO45  (B7MIM1    ), 
ISCR_ECO55  (B7LDC3    ), ISCR_ECO57  (P0AGL0    ), ISCR_ECO5E  (B5Z105    ), 
ISCR_ECO7I  (B7NRI0    ), ISCR_ECO81  (B7MYG4    ), ISCR_ECO8A  (B7M7N4    ), 
ISCR_ECOBW  (C4ZXA6    ), ISCR_ECODH  (B1XB06    ), ISCR_ECOHS  (A8A337    ), 
ISCR_ECOK1  (A1AE68    ), ISCR_ECOL5  (Q0TEV4    ), ISCR_ECOL6  (P0AGK9    ), 
ISCR_ECOLC  (B1IWD0    ), ISCR_ECOLI  (P0AGK8    ), ISCR_ECOLU  (B7N6B8    ), 
ISCR_ECOSE  (B6I5A3    ), ISCR_ECOSM  (B1LNI7    ), ISCR_ECOUT  (Q1R8K1    ), 
ISCR_EDWI9  (C5BEU6    ), ISCR_ENT38  (A4WDB2    ), ISCR_ERWT9  (B2VI31    ), 
ISCR_ESCF3  (B7LJQ3    ), ISCR_KLEP3  (B5XNJ6    ), ISCR_KLEP7  (A6TCF2    ), 
ISCR_PECAS  (Q6D258    ), ISCR_PECCP  (C6DBJ2    ), ISCR_PHOLL  (Q7N223    ), 
ISCR_PHOPR  (Q6LU63    ), ISCR_SALA4  (B5F1C1    ), ISCR_SALAR  (A9MHJ3    ), 
ISCR_SALCH  (Q57LG8    ), ISCR_SALDC  (B5FR87    ), ISCR_SALEP  (B5R5A3    ), 
ISCR_SALG2  (B5RD13    ), ISCR_SALHS  (B4TDB7    ), ISCR_SALNS  (B4T1C0    ), 
ISCR_SALPA  (Q5PNG2    ), ISCR_SALPB  (A9N1X3    ), ISCR_SALPC  (C0PYK6    ), 
ISCR_SALPK  (B5BAW5    ), ISCR_SALSV  (B4TRX7    ), ISCR_SALTI  (Q8XF25    ), 
ISCR_SALTY  (Q7CQ10    ), ISCR_SERP5  (A8GHY4    ), ISCR_SHIB3  (B2TXV6    ), 
ISCR_SHIBS  (Q31XV9    ), ISCR_SHIDS  (Q32D33    ), ISCR_SHIF8  (Q0T1Y8    ), 
ISCR_SHIFL  (P0AGL1    ), ISCR_SHISS  (Q3YZ21    ), ISCR_VIBCB  (A7MU47    ), 
ISCR_VIBCH  (Q9KTY3    ), ISCR_VIBPA  (Q87S29    ), ISCR_VIBTL  (B7VJS5    ), 
ISCR_VIBVU  (Q8DEY6    ), ISCR_VIBVY  (Q7MNG3    ), ISCR_XENNA  (Q8GLE9    ), 
ISCR_YERE8  (A1JKQ1    ), ISCR_YERP3  (A7FFX0    ), ISCR_YERPA  (Q1C5G9    ), 
ISCR_YERPE  (Q0WD07    ), ISCR_YERPG  (A9R819    ), ISCR_YERPN  (Q1CKB0    ), 
ISCR_YERPP  (A4TMV5    ), ISCR_YERPS  (Q667Y0    ), NSRR_BACHD  (Q9RC41    ), 
NSRR_BACLD  (Q65M01    ), NSRR_BACSK  (Q5WL64    ), NSRR_BACSU  (O07573    ), 
NSRR_ECO24  (A7ZV48    ), NSRR_ECO27  (B7UQI7    ), NSRR_ECO45  (B7MLI3    ), 
NSRR_ECO55  (B7LC37    ), NSRR_ECO57  (P0AF65    ), NSRR_ECO5E  (B5Z2I4    ), 
NSRR_ECO7I  (B7NTN4    ), NSRR_ECO81  (B7MSJ6    ), NSRR_ECO8A  (B7M8T8    ), 
NSRR_ECOBW  (C4ZR55    ), NSRR_ECODH  (B1XDS9    ), NSRR_ECOHS  (A8A7S3    ), 
NSRR_ECOK1  (A1AJ83    ), NSRR_ECOL5  (Q0T9L5    ), NSRR_ECOL6  (P0AF64    ), 
NSRR_ECOLC  (B1IT28    ), NSRR_ECOLI  (P0AF63    ), NSRR_ECOLU  (B7NGB2    ), 
NSRR_ECOSE  (B6I282    ), NSRR_ECOSM  (B1LQJ8    ), NSRR_ECOUT  (Q1R382    ), 
NSRR_ENT38  (A4W5R9    ), NSRR_ESCF3  (B7LLW0    ), NSRR_GEOKA  (Q5KZ63    ), 
NSRR_KLEP3  (B5Y324    ), NSRR_KLEP7  (A6TH94    ), NSRR_PECAS  (Q6D125    ), 
NSRR_PECCP  (C6DE26    ), NSRR_PHOLL  (Q7MYU4    ), NSRR_PHOPR  (Q6LM38    ), 
NSRR_SHIB3  (B2TY53    ), NSRR_SHIBS  (Q31TA8    ), NSRR_SHIDS  (Q328F7    ), 
NSRR_SHIF8  (Q0SXA4    ), NSRR_SHIFL  (P0AF66    ), NSRR_SHISS  (Q3YUG5    ), 
NSRR_VIBCB  (A7MX86    ), NSRR_VIBF1  (Q5E2D6    ), NSRR_VIBFM  (B5FBQ6    ), 
NSRR_VIBPA  (P40610    ), NSRR_YERE8  (A1JIS1    ), NSRR_YERP3  (A7FMX3    ), 
NSRR_YERPA  (Q1C106    ), NSRR_YERPE  (Q0WJT1    ), NSRR_YERPN  (Q1CEG1    ), 
NSRR_YERPS  (Q66FA9    ), RRF2_DESVH  (P33395    ), Y1287_MYCTO (P9WME2    ), 
Y1287_MYCTU (P9WME3    ), Y1318_MYCBO (P67160    ), Y1378_NEIMB (P0A0Z0    ), 
Y1593_NEIMA (P0A0Y9    ), Y2142_RHOCB (O68025    ), Y268_AQUAE  (O66625    ), 
Y379_HAEIN  (P44675    ), Y846_SYNY3  (Q55433    ), YFFB_LACLA  (Q48660    ), 
YOR2_AZOVI  (O69219    ), YWGB_BACSU  (P71047    )
» more

UniProtKB/Swiss-Prot
False negative sequences
20 sequences

ISCR_SODGM  (Q2NS30    ), NSRR_ALISL  (B6EMP9    ), NSRR_OCEIH  (Q8ETG9    ), 
NSRR_PROMH  (B4F272    ), NSRR_SALA4  (B5F393    ), NSRR_SALCH  (Q57GL3    ), 
NSRR_SALEP  (B5R0P4    ), NSRR_SALG2  (B5R9C4    ), NSRR_SALHS  (B4TFB2    ), 
NSRR_SALPA  (Q5PL57    ), NSRR_SALPB  (A9N4Z2    ), NSRR_SALPK  (B5BKI6    ), 
NSRR_SALSV  (B4TSF8    ), NSRR_SALTI  (Q8Z183    ), NSRR_SALTY  (Q8ZKA3    ), 
NSRR_SERP5  (A8G8V5    ), NSRR_STRCO  (Q9L132    ), NSRR_VIBVU  (Q8DCU1    ), 
NSRR_VIBVY  (Q7MH10    ), YWNA_BACSU  (P71036    )
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

Y241_METJA  (Q57693    )

		
PDB
[Detailed view]
4 PDB

2Y75; 4HF0; 4HF1; 4HF2

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