Due to scheduled maintenance work, this service may not be available on Monday January 22nd between 08.00 am and 9.00 am CEST
To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS01332

General information about the entry

Entry name [info] HTH_RRF2_1
Accession [info] PS01332
Entry type [info] PATTERN
Date [info] 01-JUL-1999 CREATED; 01-DEC-2001 DATA UPDATE; 20-DEC-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC01035

Name and characterization of the entry

Description [info] Rrf2-type HTH domain signature.
Pattern [info]
L-x(3)-[GRS]-[LIVY]-x(2)-[STA]-x(2)-G-x(2)-G-G-[FYIV]-x-[LIF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_12 which contains 556'388 sequence entries.


Total number of hits 138 in 138 different sequences
Number of true positive hits 137 in 137 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 20
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.28 %
Recall (true positives / (true positives + false negatives)) 87.26 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
137 sequences

AAU3_RHIME  (Q9R9M8    ), BADM_RHOPA  (O07465    ), CYMR_BACSU  (O34527    ), 
ISCR_ALISL  (B6EGX4    ), ISCR_CITK8  (A8AD51    ), ISCR_CROS8  (A7MGX6    ), 
ISCR_ECO24  (A7ZPX5    ), ISCR_ECO27  (B7UGX7    ), ISCR_ECO45  (B7MIM1    ), 
ISCR_ECO55  (B7LDC3    ), ISCR_ECO57  (P0AGL0    ), ISCR_ECO5E  (B5Z105    ), 
ISCR_ECO7I  (B7NRI0    ), ISCR_ECO81  (B7MYG4    ), ISCR_ECO8A  (B7M7N4    ), 
ISCR_ECOBW  (C4ZXA6    ), ISCR_ECODH  (B1XB06    ), ISCR_ECOHS  (A8A337    ), 
ISCR_ECOK1  (A1AE68    ), ISCR_ECOL5  (Q0TEV4    ), ISCR_ECOL6  (P0AGK9    ), 
ISCR_ECOLC  (B1IWD0    ), ISCR_ECOLI  (P0AGK8    ), ISCR_ECOLU  (B7N6B8    ), 
ISCR_ECOSE  (B6I5A3    ), ISCR_ECOSM  (B1LNI7    ), ISCR_ECOUT  (Q1R8K1    ), 
ISCR_EDWI9  (C5BEU6    ), ISCR_ENT38  (A4WDB2    ), ISCR_ERWT9  (B2VI31    ), 
ISCR_ESCF3  (B7LJQ3    ), ISCR_KLEP3  (B5XNJ6    ), ISCR_KLEP7  (A6TCF2    ), 
ISCR_PECAS  (Q6D258    ), ISCR_PECCP  (C6DBJ2    ), ISCR_PHOLL  (Q7N223    ), 
ISCR_PHOPR  (Q6LU63    ), ISCR_SALA4  (B5F1C1    ), ISCR_SALAR  (A9MHJ3    ), 
ISCR_SALCH  (Q57LG8    ), ISCR_SALDC  (B5FR87    ), ISCR_SALEP  (B5R5A3    ), 
ISCR_SALG2  (B5RD13    ), ISCR_SALHS  (B4TDB7    ), ISCR_SALNS  (B4T1C0    ), 
ISCR_SALPA  (Q5PNG2    ), ISCR_SALPB  (A9N1X3    ), ISCR_SALPC  (C0PYK6    ), 
ISCR_SALPK  (B5BAW5    ), ISCR_SALSV  (B4TRX7    ), ISCR_SALTI  (Q8XF25    ), 
ISCR_SALTY  (Q7CQ10    ), ISCR_SERP5  (A8GHY4    ), ISCR_SHIB3  (B2TXV6    ), 
ISCR_SHIBS  (Q31XV9    ), ISCR_SHIDS  (Q32D33    ), ISCR_SHIF8  (Q0T1Y8    ), 
ISCR_SHIFL  (P0AGL1    ), ISCR_SHISS  (Q3YZ21    ), ISCR_VIBCB  (A7MU47    ), 
ISCR_VIBCH  (Q9KTY3    ), ISCR_VIBPA  (Q87S29    ), ISCR_VIBTL  (B7VJS5    ), 
ISCR_VIBVU  (Q8DEY6    ), ISCR_VIBVY  (Q7MNG3    ), ISCR_XENNA  (Q8GLE9    ), 
ISCR_YERE8  (A1JKQ1    ), ISCR_YERP3  (A7FFX0    ), ISCR_YERPA  (Q1C5G9    ), 
ISCR_YERPE  (Q0WD07    ), ISCR_YERPG  (A9R819    ), ISCR_YERPN  (Q1CKB0    ), 
ISCR_YERPP  (A4TMV5    ), ISCR_YERPS  (Q667Y0    ), NSRR_BACHD  (Q9RC41    ), 
NSRR_BACLD  (Q65M01    ), NSRR_BACSK  (Q5WL64    ), NSRR_BACSU  (O07573    ), 
NSRR_ECO24  (A7ZV48    ), NSRR_ECO27  (B7UQI7    ), NSRR_ECO45  (B7MLI3    ), 
NSRR_ECO55  (B7LC37    ), NSRR_ECO57  (P0AF65    ), NSRR_ECO5E  (B5Z2I4    ), 
NSRR_ECO7I  (B7NTN4    ), NSRR_ECO81  (B7MSJ6    ), NSRR_ECO8A  (B7M8T8    ), 
NSRR_ECOBW  (C4ZR55    ), NSRR_ECODH  (B1XDS9    ), NSRR_ECOHS  (A8A7S3    ), 
NSRR_ECOK1  (A1AJ83    ), NSRR_ECOL5  (Q0T9L5    ), NSRR_ECOL6  (P0AF64    ), 
NSRR_ECOLC  (B1IT28    ), NSRR_ECOLI  (P0AF63    ), NSRR_ECOLU  (B7NGB2    ), 
NSRR_ECOSE  (B6I282    ), NSRR_ECOSM  (B1LQJ8    ), NSRR_ECOUT  (Q1R382    ), 
NSRR_ENT38  (A4W5R9    ), NSRR_ESCF3  (B7LLW0    ), NSRR_GEOKA  (Q5KZ63    ), 
NSRR_KLEP3  (B5Y324    ), NSRR_KLEP7  (A6TH94    ), NSRR_PECAS  (Q6D125    ), 
NSRR_PECCP  (C6DE26    ), NSRR_PHOLL  (Q7MYU4    ), NSRR_PHOPR  (Q6LM38    ), 
NSRR_SHIB3  (B2TY53    ), NSRR_SHIBS  (Q31TA8    ), NSRR_SHIDS  (Q328F7    ), 
NSRR_SHIF8  (Q0SXA4    ), NSRR_SHIFL  (P0AF66    ), NSRR_SHISS  (Q3YUG5    ), 
NSRR_VIBCB  (A7MX86    ), NSRR_VIBF1  (Q5E2D6    ), NSRR_VIBFM  (B5FBQ6    ), 
NSRR_VIBPA  (P40610    ), NSRR_YERE8  (A1JIS1    ), NSRR_YERP3  (A7FMX3    ), 
NSRR_YERPA  (Q1C106    ), NSRR_YERPE  (Q0WJT1    ), NSRR_YERPN  (Q1CEG1    ), 
NSRR_YERPS  (Q66FA9    ), RRF2_DESVH  (P33395    ), Y1287_MYCTO (P9WME2    ), 
Y1287_MYCTU (P9WME3    ), Y1318_MYCBO (P67160    ), Y1378_NEIMB (P0A0Z0    ), 
Y1593_NEIMA (P0A0Y9    ), Y2142_RHOCB (O68025    ), Y268_AQUAE  (O66625    ), 
Y379_HAEIN  (P44675    ), Y846_SYNY3  (Q55433    ), YFFB_LACLA  (Q48660    ), 
YOR2_AZOVI  (O69219    ), YWGB_BACSU  (P71047    )
» more

UniProtKB/Swiss-Prot
False negative sequences
20 sequences

ISCR_SODGM  (Q2NS30    ), NSRR_ALISL  (B6EMP9    ), NSRR_OCEIH  (Q8ETG9    ), 
NSRR_PROMH  (B4F272    ), NSRR_SALA4  (B5F393    ), NSRR_SALCH  (Q57GL3    ), 
NSRR_SALEP  (B5R0P4    ), NSRR_SALG2  (B5R9C4    ), NSRR_SALHS  (B4TFB2    ), 
NSRR_SALPA  (Q5PL57    ), NSRR_SALPB  (A9N4Z2    ), NSRR_SALPK  (B5BKI6    ), 
NSRR_SALSV  (B4TSF8    ), NSRR_SALTI  (Q8Z183    ), NSRR_SALTY  (Q8ZKA3    ), 
NSRR_SERP5  (A8G8V5    ), NSRR_STRCO  (Q9L132    ), NSRR_VIBVU  (Q8DCU1    ), 
NSRR_VIBVY  (Q7MH10    ), YWNA_BACSU  (P71036    )
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

Y241_METJA  (Q57693    )

		
PDB
[Detailed view]
4 PDB

2Y75; 4HF0; 4HF1; 4HF2

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission