Entry: PS01340

General information about the entry
Entry name CORNICHON
Accession number PS01340
Entry type PATTERN
Date DEC-2001 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC01042
Name and characterization of the entry
DescriptionCornichon family signature.
Pattern [VI]-x(3)-[DE]-L-x(2)-D-[FY]-x-[NS]-[PS]-I-[DE].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 20 hits in 20 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 20 hits in 20 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 5
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 80.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CNIH2_CHICK (Q401C0), CNIH2_DANRE (Q5BL21), CNIH2_HUMAN (Q6PI25), 
CNIH2_MOUSE (O35089), CNIH2_RAT   (Q5BJU5), CNIH2_XENTR (Q0VFK3), 
CNIH3_HUMAN (Q8TBE1), CNIH3_MOUSE (Q6ZWS4), CNIH3_RAT   (D0Q0Y7), 
CNIH_BOVIN  (Q5BIN6), CNIH_HUMAN  (O95406), CNIH_MOUSE  (O35372), 
CNIH_PONAB  (Q5RDB5), CNI_DROME   (P49858), CNI_DROVI   (P52159), 
ERV14_SCHPO (Q9P6K6), ERV14_YEAST (P53173), ERV15_YEAST (P38312), 
YEY5_SCHPO  (O14038), YFR3_CAEEL  (Q22361)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CNIH1_ARATH (Q9C7D7), CNIH2_ARATH (Q3EDD7), CNIH3_ARATH (Q8GWT5), 
CNIH4_ARATH (Q84W04), CNIH5_ARATH (Q9SZ74)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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