Entry: PS50023
General information about the entry
Entry nameLIM_DOMAIN_2
Accession numberPS50023
Entry typeMATRIX
DateNOV-1997 (CREATED); APR-2005 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00382
Associated ProRulePRU00125
Name and characterization of the entry
DescriptionLIM domain profile.
Matrix / Profile
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=61;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=61;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7028; R2=0.0099; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=585; N_SCORE=8.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=283; N_SCORE=5.5; MODE=1; TEXT='R?';
/DEFAULT: B0=-50; E0=-50; D=-20; I=-20; B1=*; E1=*; MI=-105; MD=-105; IM=-105; DM=-105;

                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B0=0; B1=0; BI=-105; BD=-105;
/M: SY='P'; M= -6, -4,-26, -1,  3,-22,-13,-10,-17, -6,-19,-14, -4, 13, -3,-11, -1, -4,-17,-26,-16, -2;
/M: SY='R'; M= -9, -8,-24,-10, -4,-15,-17, -9,-12, 10,-11, -4, -4,-16, -2, 11, -7, -6, -8,-23, -9, -4;
/M: SY='C'; M=-10,-20,118,-30,-30,-20,-30,-30,-30,-29,-20,-20,-20,-40,-30,-29,-10,-10,-10,-50,-30,-30;
/M: SY='A'; M= 11, -6,-18, -9, -5,-18, -3, -6,-16, -8,-16,-11, -3, -8, -5,-11,  4, -3,-11,-23,-12, -6;
/M: SY='G'; M=  0, -8,-20,-10, -9,-20,  8,-11,-22, -1,-19,-11, -2,-18, -7,  3,  0, -7,-13,-23,-16, -9;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='G'; M= -4,  6,-25,  4,  0,-26, 12, -2,-29, -1,-25,-16, 10,-15,  0, -2,  4, -7,-24,-28,-18,  0;
/M: SY='K'; M= -9, -1,-28,  0,  8,-24,-12, -3,-23, 15,-19, -9,  0,-13, 10, 12, -5, -8,-20,-22,-11,  8;
/M: SY='P'; M= -3,-13,-27,-13, -6,-16, -8,-12,-13, -8,-13, -8, -9,  6, -6,-10, -4, -5,-13,-22,-13, -8;
/M: SY='I'; M= -8,-29,-22,-36,-29,  4,-36,-28, 39,-27, 19, 17,-23,-24,-23,-26,-18, -7, 31,-21, -1,-29;
/M: SY='Y'; M= -5, -8,-21, -9, -6, -5,-17, -4, -9, -8, -8, -6, -6,-15, -5, -7, -1,  2, -8,-16,  6, -7;
/M: SY='D'; M= -3,  2,-28,  7,  2,-26,  5,-10,-27, -6,-24,-19,  0,  6, -6,-11,  1, -8,-23,-28,-21, -3;
/M: SY='R'; M=  0, -2,-22, -4,  0,-20, -8, -9,-18,  2,-16,-11,  1,-13,  0,  5,  3,  1,-13,-26,-14, -1;
/I:         MD=-21;
/M: SY='E'; M= -7,  3,-17,  7, 14,-10,-13, -1,-15, -1,-11,-10, -1, -7,  4, -4, -2, -6,-15,-15, -3,  9; D=-3;
/I:         I=-5; MI=0; IM=0; DM=-21;
/M: SY='V'; M= -8,-20,-15,-22,-15, -1,-25,-15,  5,-10,  2,  3,-18,-22,-13, -8,-13, -7,  8,-16,  2,-15;
/M: SY='V'; M= -8,-23,-17,-26,-19,  2,-27,-16, 14,-14, 14, 14,-22,-24,-15, -8,-17, -6, 15,-20,  0,-18;
/M: SY='R'; M= -8, -5,-22, -8, -2,-17,-19, -8,-11,  5,-10, -5, -1,-16,  2, 11, -2,  1, -7,-26,-11, -1;
/M: SY='A'; M= 26,-11, -4,-18,-12,-15, -6,-18, -9,-11, -9, -7,-10,-15,-12,-17,  6,  0,  0,-24,-16,-11;
/M: SY='L'; M= -8, -9,-23,-10, -7,-10,-15,-11, -6, -7,  3,  2, -8,-17, -6, -3,-11, -6, -7,-23, -8, -8;
/M: SY='D'; M= -7, 18,-25, 21,  2,-30, 19, -7,-33, -7,-28,-22, 16,-15, -5,-11,  4, -9,-27,-31,-23, -2;
/M: SY='K'; M=-11, -3,-25, -4,  3,-16,-18, -3,-21, 16,-15, -7, -1,-16,  4, 16, -7, -6,-17,-20, -5,  3;
/M: SY='x'; M= -1, -9,-18,-11, -7, -9,-17, -8, -7, -5, -9, -5, -6,-16, -7, -4,  0, -1, -1,-24, -6, -8;
/M: SY='W'; M=-20,-31,-36,-34,-27, 32,-25,-13, -9,-20, -6, -9,-29,-29,-22,-17,-29,-19,-16, 77, 44,-22;
/M: SY='H'; M=-19,  0,-22,  0, -1,-20,-20, 92,-30,-11,-20, -2,  9,-21,  8, -2,-10,-19,-29,-31, 17, -1;
/M: SY='P'; M= -6,-14,-26,-12, -2,-17,-21,-16, -5, -3, -8, -4,-13,  7, -6, -7, -7, -6, -5,-26,-15, -6;
/M: SY='E'; M= -2, 11,-23, 12, 18,-26,-10, -1,-25,  3,-22,-17,  9, -8,  7, -2,  5, -3,-22,-30,-16, 12;
/M: SY='C'; M=-11,-17, 99,-26,-26,-20,-29,-12,-30,-27,-20,-17,-16,-37,-24,-26,-10,-11,-13,-47,-23,-26;
/M: SY='F'; M=-16,-29,-20,-36,-27, 60,-29,-16,  4,-28, 14,  3,-21,-29,-34,-19,-20, -9,  3,  3, 25,-27;
/M: SY='R'; M= -5, -7,-13,-11, -6,-17,-20,-11,-14,  8,-14, -6, -4,-17, -2, 10, -2,  2, -6,-26,-10, -5;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='A'; M=  6, -8, -4,-13, -8,-11,-14,-12,-11,-10,-11, -6, -6,-17, -7,-12,  6,  5, -5,-26,-10, -8;
/M: SY='E'; M= -6, -3,-20, -3,  1,-15,-19, -7, -8, -3, -8, -5, -4,-16, -3, -5, -4, -4, -5,-26, -9, -2;
/M: SY='C'; M= -9,-19,116,-29,-29,-20,-28,-29,-30,-29,-20,-20,-19,-39,-29,-29, -9,-10,-10,-49,-30,-29;
/M: SY='G'; M= -4,  3,-25,  2,  1,-24, 11, -1,-27, -1,-24,-14,  9,-15,  1, -2,  3, -8,-24,-27,-17,  0;
/M: SY='K'; M= -6, -4,-14, -7,  1,-21,-19, -7,-18, 11,-17, -7, -1,-15,  4, 10, -1,  0,-12,-27,-12,  2;
/M: SY='P'; M= -7, -5,-24, -6,  0,-20,-16, -3,-17, -2,-19,-10, -1,  8,  5, -2, -1, -3,-19,-26,-13,  1;
/M: SY='L'; M=-11,-29,-19,-32,-22, 16,-31,-21, 19,-29, 39, 17,-27,-29,-22,-19,-27,-10, 10,-17,  3,-22;
/M: SY='S'; M=  1,  4,-19,  3,  0,-23,  0,-10,-21, -5,-19,-15,  4,-13, -4, -7,  7,  2,-15,-29,-18, -2;
/M: SY='E'; M= -5,  1,-23,  2,  5,-23, -4, -9,-20, -5,-18,-13,  1, -2, -2, -8,  3, -2,-17,-30,-18,  1;
/I:         MD=-23;
/M: SY='G'; M= -4, -5,-21, -5, -4,-19,  9,-10,-19, -3,-15, -9, -3,-14, -5, -4,  0, -4,-13,-21,-15, -5; D=-4;
/I:         I=-5; MI=0; IM=0; DM=-23;
/M:         M= -7, -5,-23, -8, -4,-10, -7, -9,-17, -2,-14, -9, -1,-15, -5, -2, -1,  0,-14,-19, -7, -5;
/M: SY='F'; M=-13,-20,  9,-27,-23, 23,-27, -7, -6,-22,  0, -3,-17,-30,-23,-18,-14, -7, -3, -9, 18,-23;
/M: SY='F'; M= -8,-16,-21,-19,-17, 16,-22, -7, -1,-14,  0,  0,-13,-23,-17,-12,-11, -6,  0, -8, 14,-17;
/M: SY='E'; M= -6, -8,-24, -7,  3,-10,-17,-12, -8, -8, -5, -3, -9,-11, -5,-11, -6, -6, -8,-17, -8, -1;
/M: SY='R'; M=-12, -5,-26, -5,  2,-16,-20,  2,-16,  8,-13, -6, -3,-13,  3, 12, -8, -7,-13,-22, -4,  1;
/M: SY='D'; M=-10, 22,-27, 28, 15,-30, -4,  1,-30,  1,-24,-19, 13,-11,  2, -5,  0, -8,-25,-32,-17,  8;
/M: SY='G'; M= -4,  5,-27,  4, -4,-28, 28, -9,-32, -6,-27,-17,  9,-16, -7, -6,  3,-11,-26,-27,-23, -6;
/M: SY='R'; M= -8, -2,-27, -2,  8,-24,-16, -3,-21, 14,-16, -7, -2,-13, 11, 15, -5, -6,-17,-24,-11,  9;
/M: SY='I'; M= -6,-25,-25,-25,-17, -3,-27,-22, 13,-19, 11,  5,-22,  1,-18,-20,-16, -7,  7,-22, -8,-19;
/M: SY='Y'; M=-16,-23,-23,-25,-21, 25,-29,  4,  4,-18,  9,  4,-21,-28,-17,-14,-20, -9, -1, 10, 44,-21;
/M: SY='C'; M=-10,-20,118,-30,-30,-20,-30,-28,-30,-30,-20,-20,-20,-40,-29,-30,-10,-10,-10,-50,-29,-30;
/I:         I=-20; MI=0; IM=0;
/M: SY='K'; M=-10, -4,-27, -3,  9,-22,-16, -4,-21, 17,-19, -7, -2,-10,  8, 16, -6, -8,-17,-23,-11,  7;
/M: SY='E'; M= -5,  2,-25,  2,  4,-22,-12,  1,-21,  4,-20,-12,  3, -5,  3,  3,  1, -3,-18,-26,-11,  2;
/M: SY='C'; M=-16, 11, 25, 15, -4,-28,-19, 13,-34,-14,-24,-19,  3,-24, -9,-15, -6,-13,-23,-41,-14, -8;
/M: SY='Y'; M=-16,-17,-26,-20,-17, 26,-26, 17, -5,-13, -3, -1,-13,-26,-12,-10,-15, -9,-10, 10, 47,-17;
/M: SY='H'; M= -9, -6,-25, -6, -2, -8,-10,  1,-15,-10,-10, -8, -4,-13, -6, -9, -7, -9,-15,-17, -2, -5;
/M: SY='K'; M= -5, -1,-26, -2,  7,-24,-15, -7,-20, 16,-19, -8,  0,-11,  8, 14, -3, -6,-16,-24,-13,  6;
/M: SY='R'; M= -7, -8,-20,-10, -5,-12,-19, -7, -9, -2, -1, -1, -7,-18, -3,  3, -9, -4, -8,-22, -7, -5;
/M: SY='F'; M=-12,-19,-22,-24,-17, 24,-23, -7, -3,-16,  3,  1,-13,-22,-18,-10,-12, -5, -2, -8, 13,-17;
/M: SY='G'; M=  5, -4,-21, -6, -5,-23, 11,-13,-22, -5,-20,-13, -1,-14, -6, -8,  4, -5,-15,-25,-19, -6;
/M: SY='P'; M= -5, -9,-23, -8, -1,-21,-16,-14,-13, -4,-16,-11, -8, 12, -4, -7, -1,  0,-12,-28,-17, -5;
/I:         E0=0; E1=0; IE=-105; DE=-105;
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 843 hits in 359 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 843 hits in 359 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 99.65 %
Comments
  • MATRIX_TYPE: protein_domain
  • Scaling database: UniProtKB/Swiss-Prot: reversed
  • Matrix author: K_Hofmann, CJA_Sigrist
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 6
  • FT_KEY: DOMAIN
  • FT_DESC: LIM zinc-binding
  • VERSION: 2
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ABLM1_HUMAN (O14639), ABLM1_MOUSE (Q8K4G5), ABLM2_HUMAN (Q6H8Q1), 
ABLM2_MOUSE (Q8BL65), ABLM2_RAT   (Q6KC51), ABLM3_HUMAN (O94929), 
ABLM3_MOUSE (Q69ZX8), ADCE_DICDI  (Q55GN8), AJUBA_HUMAN (Q96IF1), 
AJUBA_MOUSE (Q91XC0), AJUBA_RAT   (Q5U2Z2), APTE_DROME  (P29673), 
AWH_DROME   (Q8IRC7), CRIP1_BOVIN (Q56K04), CRIP1_HUMAN (P50238), 
CRIP1_MOUSE (P63254), CRIP1_RAT   (P63255), CRIP2_BOVIN (Q0VFX8), 
CRIP2_HUMAN (P52943), CRIP2_MOUSE (Q9DCT8), CRIP2_PONAB (Q5R7Y1), 
CRIP2_RAT   (P36201), CRIP3_HUMAN (Q6Q6R5), CRIP3_MOUSE (Q6Q6R3), 
CSRP1_BOVIN (Q3MHY1), CSRP1_CHICK (P67966), CSRP1_COTJA (P67967), 
CSRP1_HUMAN (P21291), CSRP1_MOUSE (P97315), CSRP1_PONAB (Q5RCT4), 
CSRP1_RAT   (P47875), CSRP2_BOVIN (Q32LE9), CSRP2_CHICK (P50460), 
CSRP2_COTJA (Q05158), CSRP2_HUMAN (Q16527), CSRP2_MOUSE (P97314), 
CSRP2_RAT   (Q62908), CSRP3_BOVIN (Q4U0T9), CSRP3_HUMAN (P50461), 
CSRP3_MOUSE (P50462), CSRP3_RAT   (P50463), DA1_ARATH   (P0C7Q8), 
DAR1_ARATH  (Q8W4F0), DAR2_ARATH  (Q0WSN2), DAR4_ARATH  (Q9FKN7), 
DAR5_ARATH  (Q84WJ0), DAR6_ARATH  (Q9FJX8), DAR7_ARATH  (Q9FJX9), 
ESN_DROME   (Q9U1I1), ESN_DROPS   (Q292U5), FBLI1_BOVIN (Q1JQB5), 
FBLI1_HUMAN (Q8WUP2), FBLI1_MOUSE (Q71FD7), FBLI1_PONAB (Q5REN1), 
FHL1_HUMAN  (Q13642), FHL1_MOUSE  (P97447), FHL1_RAT    (Q9WUH4), 
FHL2_BOVIN  (Q2KI95), FHL2_HUMAN  (Q14192), FHL2_MOUSE  (O70433), 
FHL2_RAT    (O35115), FHL3_BOVIN  (Q3ZBI6), FHL3_HUMAN  (Q13643), 
FHL3_MOUSE  (Q9R059), FHL5_BOVIN  (Q2YDK0), FHL5_HUMAN  (Q5TD97), 
FHL5_MACFA  (Q4R7A4), FHL5_MOUSE  (Q9WTX7), FHL5_RAT    (Q6AXT1), 
HM14_CAEEL  (P20271), ISL1_CHICK  (P50211), ISL1_DANRE  (P53405), 
ISL1_HUMAN  (P61371), ISL1_MESAU  (P61373), ISL1_MOUSE  (P61372), 
ISL1_RAT    (P61374), ISL2A_DANRE (P53406), ISL2A_ONCTS (P53408), 
ISL2B_DANRE (P53407), ISL2B_ONCTS (P50212), ISL2_CHICK  (P53410), 
ISL2_HUMAN  (Q96A47), ISL2_MOUSE  (Q9CXV0), ISL2_RAT    (P50480), 
ISL3_ONCTS  (P53409), LASP1_BOVIN (Q3B7M5), LASP1_CAEEL (P34416), 
LASP1_DROME (Q8I7C3), LASP1_HUMAN (Q14847), LASP1_MOUSE (Q61792), 
LASP1_PIG   (P80171), LASP1_PONAB (Q5R5W0), LASP1_RABIT (O77506), 
LASP1_RAT   (Q99MZ8), LDB3_HUMAN  (O75112), LDB3_MOUSE  (Q9JKS4), 
LHX1_CHICK  (P53411), LHX1_DANRE  (Q90476), LHX1_HUMAN  (P48742), 
LHX1_MESAU  (P63008), LHX1_MOUSE  (P63006), LHX1_PANTR  (Q5IS44), 
LHX1_RAT    (P63007), LHX1_SAIBB  (Q5IS89), LHX1_XENLA  (P29674), 
LHX2_HUMAN  (P50458), LHX2_MOUSE  (Q9Z0S2), LHX2_RAT    (P36198), 
LHX3_CHICK  (P53412), LHX3_DANRE  (Q90421), LHX3_HALRO  (Q25132), 
LHX3_HUMAN  (Q9UBR4), LHX3_MOUSE  (P50481), LHX3_PIG    (O97581), 
LHX3_XENLA  (P36200), LHX4_HUMAN  (Q969G2), LHX4_MOUSE  (P53776), 
LHX5_DANRE  (P52889), LHX5_HUMAN  (Q9H2C1), LHX5_MOUSE  (P61375), 
LHX5_RAT    (P61376), LHX5_XENLA  (P37137), LHX6_HUMAN  (Q9UPM6), 
LHX6_MOUSE  (Q9R1R0), LHX8_HUMAN  (Q68G74), LHX8_MOUSE  (O35652), 
LHX9_ASTFA  (A2I8Z7), LHX9_BOVIN  (A0JNI8), LHX9_CHICK  (Q90881), 
LHX9_DANRE  (Q1LWV4), LHX9_GLARU  (A2PZF9), LHX9_HUMAN  (Q9NQ69), 
LHX9_MOUSE  (Q9WUH2), LHX9_RAT    (Q80W90), LHX9_XENLA  (Q68EY3), 
LIM3L_HUMAN (P0CW20), LIMA1_HUMAN (Q9UHB6), LIMA1_MOUSE (Q9ERG0), 
LIMA_DICDI  (Q54QR1), LIMB_DICDI  (Q54NW4), LIMC1_HUMAN (Q9UPQ0), 
LIMC1_MOUSE (Q3UH68), LIMC1_XENLA (Q3KQW7), LIMCH_DICDI (Q55GV9), 
LIMC_DICDI  (Q9BIW5), LIMD1_HUMAN (Q9UGP4), LIMD1_MOUSE (Q9QXD8), 
LIMD2_BOVIN (Q1LZA7), LIMD2_HUMAN (Q9BT23), LIMD2_MOUSE (Q8BGB5), 
LIMD2_RAT   (Q4KM31), LIMD_DICDI  (Q9BIW4), LIME_DICDI  (O60952), 
LIMF_DICDI  (Q86I44), LIMG_DICDI  (Q55DS4), LIMK1_CHICK (Q8QFP8), 
LIMK1_DROME (Q8IR79), LIMK1_HUMAN (P53667), LIMK1_MOUSE (P53668), 
LIMK1_RAT   (P53669), LIMK1_XENLA (O42565), LIMK2_BOVIN (Q32L23), 
LIMK2_CHICK (P53666), LIMK2_HUMAN (P53671), LIMK2_MOUSE (O54785), 
LIMK2_RAT   (P53670), LIMKA_DICDI (Q54L00), LIMKB_DICDI (P0CD62), 
LIMS1_HUMAN (P48059), LIMS1_MOUSE (Q99JW4), LIMS2_BOVIN (Q2KJ33), 
LIMS2_HUMAN (Q7Z4I7), LIMS2_MOUSE (Q91XD2), LIMS3_HUMAN (P0CW19), 
LIN11_CAEEL (P20154), LMCD1_BOVIN (Q17QE2), LMCD1_HUMAN (Q9NZU5), 
LMCD1_MOUSE (Q8VEE1), LMCD1_PIG   (Q5PXT2), LMO3_BOVIN  (Q2KIA3), 
LMO3_DANRE  (Q503U0), LMO3_HUMAN  (Q8TAP4), LMO3_MOUSE  (Q8BZL8), 
LMO3_PONAB  (Q5RBW7), LMO3_RAT    (Q99MB5), LMO3_XENLA  (Q9YH16), 
LMO41_XENTR (Q5FVB2), LMO42_XENTR (Q6DJ06), LMO4A_XENLA (Q8AW92), 
LMO4B_XENLA (Q801P0), LMO4_BOVIN  (Q3SWZ8), LMO4_HUMAN  (P61968), 
LMO4_MOUSE  (P61969), LMO7_HUMAN  (Q8WWI1), LMX1A_HUMAN (Q8TE12), 
LMX1A_MESAU (Q04650), LMX1A_MOUSE (Q9JKU8), LMX1B_CHICK (P53413), 
LMX1B_HUMAN (O60663), LMX1B_MESAU (Q60564), LMX1B_MOUSE (O88609), 
LMX1B_XENLA (Q8UVR3), LPP_CHICK   (Q5F464), LPP_HUMAN   (Q93052), 
LPP_MOUSE   (Q8BFW7), LPP_RAT     (Q5XI07), LPXN_HUMAN  (O60711), 
LPXN_MOUSE  (Q99N69), LRG1_YEAST  (P35688), MEC3_CAEBR  (P34764), 
MEC3_CAEEL  (P09088), MEC3_CAERE  (P34765), MICA1_HUMAN (Q8TDZ2), 
MICA1_MOUSE (Q8VDP3), MICA2_HUMAN (O94851), MICA2_MOUSE (Q8BML1), 
MICA3_HUMAN (Q7RTP6), MICA3_MOUSE (Q8CJ19), MILK1_HUMAN (Q8N3F8), 
MILK1_MOUSE (Q8BGT6), MILK2_HUMAN (Q8IY33), MLP1_DROME  (P53777), 
MLP2_DROME  (Q24400), NRAP_HUMAN  (Q86VF7), NRAP_MOUSE  (Q80XB4), 
PAXB_DICDI  (Q8MML5), PAXI_CHICK  (P49024), PAXI_HUMAN  (P49023), 
PAXI_MOUSE  (Q8VI36), PAXI_PONAB  (Q5R7I1), PAXI_RAT    (Q66H76), 
PDLI1_BOVIN (Q5E9E1), PDLI1_HUMAN (O00151), PDLI1_MOUSE (O70400), 
PDLI1_RAT   (P52944), PDLI2_BOVIN (Q3T0C8), PDLI2_HUMAN (Q96JY6), 
PDLI2_MACFA (Q9GKU1), PDLI2_MOUSE (Q8R1G6), PDLI2_RAT   (Q6AYD6), 
PDLI3_BOVIN (Q3SYZ8), PDLI3_CHICK (Q9PU47), PDLI3_HUMAN (Q53GG5), 
PDLI3_MOUSE (O70209), PDLI3_PIG   (Q6QGC0), PDLI3_RAT   (Q66HS7), 
PDLI3_XENLA (Q6GLJ6), PDLI4_BOVIN (Q3T005), PDLI4_CHICK (Q9PW72), 
PDLI4_HUMAN (P50479), PDLI4_MOUSE (P70271), PDLI4_RAT   (P36202), 
PDLI5_HUMAN (Q96HC4), PDLI5_MOUSE (Q8CI51), PDLI5_RAT   (Q62920), 
PDLI7_BOVIN (Q3SX40), PDLI7_CHICK (Q679P3), PDLI7_DANRE (Q6P7E4), 
PDLI7_HUMAN (Q9NR12), PDLI7_MOUSE (Q3TJD7), PDLI7_RAT   (Q9Z1Z9), 
PDLI7_XENLA (Q6INU3), PIN2_CAEEL  (Q19157), PRI1A_XENLA (Q90Z06), 
PRI1B_XENLA (Q90WV2), PRIC1_AEDAE (Q174I2), PRIC1_ANOGA (Q7QJT4), 
PRIC1_DROME (A1Z6W3), PRIC1_DROPS (Q292U2), PRIC1_HUMAN (Q96MT3), 
PRIC1_MOUSE (Q3U5C7), PRIC1_RAT   (Q71QF9), PRIC1_XENTR (Q28FG2), 
PRIC2_HUMAN (Q7Z3G6), PRIC2_MOUSE (Q80Y24), PRIC3_HUMAN (O43900), 
PRIC3_MOUSE (Q80VL3), PRIC4_HUMAN (Q2TBC4), PXL1_CAEEL  (Q09476), 
PXL1_YEAST  (P36166), RBTN1_BOVIN (Q0P5B3), RBTN1_DANRE (Q8JFQ2), 
RBTN1_HUMAN (P25800), RBTN1_MOUSE (Q924W9), RBTN1_XENLA (Q3B8H4), 
RBTN2_BOVIN (Q1LZ94), RBTN2_DANRE (Q9PTJ3), RBTN2_HUMAN (P25791), 
RBTN2_MOUSE (P25801), RBTN2_XENLA (Q90XH3), RBTN2_XENTR (Q5M8V8), 
RGA1_SCHPO  (O43052), RGA1_YEAST  (P39083), RGA2_YEAST  (Q06407), 
RGA3_SCHPO  (O14014), RGA4_SCHPO  (O74360), SCEL_HUMAN  (O95171), 
SCEL_MOUSE  (Q9EQG3), SF3_HELAN   (P29675), TES_AOTNA   (Q07DW1), 
TES_ATEAB   (Q00PK1), TES_ATEGE   (Q09YL5), TES_BOVIN   (Q2YDE9), 
TES_CALJA   (Q2QLG8), TES_CALMO   (Q2QLC3), TES_CANFA   (A0M8U6), 
TES_CHICK   (Q90YH9), TES_CHLAE   (Q2IBA3), TES_COLGU   (Q07DZ4), 
TES_DASNO   (Q07E51), TES_EULMM   (Q2IBH0), TES_FELCA   (A0M8S5), 
TES_HORSE   (Q2QLB2), TES_HUMAN   (Q9UGI8), TES_LOXAF   (Q108U9), 
TES_MICMU   (Q2QL92), TES_MONDO   (Q2QLA1), TES_MOUSE   (P47226), 
TES_MUNMU   (Q09YK3), TES_MUNRE   (Q07DX3), TES_MUSPF   (Q07E27), 
TES_NEONE   (Q07E40), TES_NOMLE   (Q07DY3), TES_OTOGA   (Q2QLH9), 
TES_PANTR   (Q2QLF4), TES_PAPAN   (A0M8R4), TES_PIG     (Q2QLE3), 
TES_PONAB   (Q5RC52), TES_RABIT   (Q09YN8), TES_RAT     (Q2LAP6), 
TES_RHIFE   (Q2IBC3), TES_SAIBB   (Q09YI0), TES_SHEEP   (Q09YJ2), 
TES_XENLA   (Q7ZXE9), TES_XENTR   (Q6DIR5), TGFI1_BOVIN (Q3MHZ4), 
TGFI1_HUMAN (O43294), TGFI1_MOUSE (Q62219), TGFI1_RAT   (Q99PD6), 
TGFI1_XENLA (Q2TCH4), TRIP6_BOVIN (Q3SX26), TRIP6_HUMAN (Q15654), 
TRIP6_MOUSE (Q9Z1Y4), UNC97_CAEEL (P50464), WTIP_DANRE  (A8DZE6), 
WTIP_HUMAN  (A6NIX2), WTIP_MOUSE  (Q7TQJ8), WTIP_XENLA  (A9LS46), 
XIRP2_MOUSE (Q4U4S6), Y6787_DICDI (Q55BI0), YOCC_SCHPO  (O74398), 
ZASP_DROME  (A1ZA47), ZN185_HUMAN (O15231), ZN185_MOUSE (Q62394), 
ZYX_CHICK   (Q04584), ZYX_HUMAN   (Q15942), ZYX_MOUSE   (Q62523), 
ZYX_XENLA   (A5H447), ZYX_XENTR   (Q0VA45)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
Y2098_DICDI (Q55A66), YD266_YEAST (Q05580), YJ01_SCHPO  (Q76PD2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1A7I; 1B8T; 1CTL; 1CXX; 1G47; 1IBI; 1IML; 1J2O; 1M3V; 1NYP; 1QLI; 1RUT; 1U5S; 1V6G; 1WIG; 1WYH; 1X3H; 1X4K; 1X4L; 1X61; 1X62; 1X63; 1X64; 1X68; 1X6A; 1ZFO; 2CO8; 2COR; 2CU8; 2CUP; 2CUQ; 2CUR; 2D8X; 2D8Y; 2D8Z; 2DAR; 2DFY; 2DJ7; 2DLO; 2EGQ; 2EHE; 2IYB; 2JTN; 2KBX; 2L3K; 2L4Z; 2L6Y; 2L6Z; 2O10; 2O13; 2RGT; 2XJY; 2XJZ; 2XQN; 3F6Q; 3IXE; 3MMK;

View entry in original PROSITE format
View entry in raw text format (no links)


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