Entry: PS50079

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General information about the entry

Entry name [info] NLS_BP
Accession [info] PS50079
Entry type [info] MATRIX
Date [info] AUG-2006 (CREATED); APR-2007 (DATA UPDATE); APR-2006 (INFO UPDATE).
PROSITE Doc. [info] PDOC00015
Associated ProRule [info] PRU00768

Name and characterization of the entry

Description [info] Bipartite nuclear localization signal profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=17; TOPOLOGY=LINEAR;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=17;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0; R2=1.0; TEXT='RScore';
/CUT_OFF: LEVEL=0; SCORE=4; N_SCORE=4.0; MODE=1; TEXT='*';
/CUT_OFF: LEVEL=-1; SCORE=3; N_SCORE=3.0; MODE=1; TEXT='*';
/DEFAULT: D=*; I=*; B0=*; B1=*; E0=*; E1=*; MD=0; DM=0; M0=*;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B0=0; B1=0;
/M: SY='B'; M=  *,  *,  *,  *,  *,  *,  *,  *,  0,  *,  *,  *,  *,  *,  0,  *,  *,  *,  *,  *;
/M: SY='B'; M=  *,  *,  *,  *,  *,  *,  *,  *,  0,  *,  *,  *,  *,  *,  0,  *,  *,  *,  *,  *;
/M:
/M:
/M:
/M:
/M:
/M:
/M:
/M:
/M: D=0;
/M: D=0;
/M: SY='B'; M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0;
/M: SY='B'; M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0;
/M: SY='B'; M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0;
/M: SY='B'; M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0;
/M: SY='B'; M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0;
/I:         E0=0; E1=0;
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Comments [info]

Matrix type [info] localization_signal
Scaling database [info] none
Skip flag [info] TRUE
Author [info] K_Hofmann, N_Hulo
Version [info] 2

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