PROSITE

/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=19;
/DISJOINT: DEFINITION=PROTECT; N1=2; N2=18;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.2710; R2=0.01882878; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=437; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=330; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105;

                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='A'; M= 15, -5,-16,-10, -6,-19,-11,-16,-15, -1,-15,-11, -4, -6, -6, -3,  9, 11, -6,-26,-16, -6;
/M: SY='A'; M= 14,  1,-16, -5, -3,-21, -8,  2,-17, -6,-18,-11,  4,-12,  0, -8, 13,  7,-11,-28,-13, -2;
/M: SY='A'; M= 30,-15,-15,-22,-14,-17, -5,-22, -2,-14, -8, -6,-14, -6,-15,-21,  2, -3,  6,-22,-18,-15;
/M: SY='V'; M= 14,-23,-16,-30,-23, -7,-23,-27, 22,-20,  6,  6,-20,-20,-20,-23, -6, -3, 27,-24,-10,-23;
/M: SY='S'; M= 12, -3,-11, -4, -3,-14, -2,-12,-18,-11,-26,-18,  6,-11, -3,-12, 33, 16, -8,-35,-17, -3;
/M: SY='Q'; M= -9, -3,-28, -3, 15,-36,-21,  6,-15,  7,-17,  1, -3,-12, 51,  7, -1, -9,-22,-21,-10, 33;
/M: SY='I'; M= -7,-27,-26,-35,-27, -2,-35,-28, 41,-27, 14, 15,-18,-20,-19,-27,-13, -6, 28,-23, -3,-27;
/M: SY='G'; M= -1, -2,-20, -5, -9,-21, 15, -7,-26, -9,-24,-16,  7,-15, -7, -4, 13,  7,-18,-29,-18, -9;
/M: SY='D'; M=-20, 50,-30, 70, 20,-40,-10,  0,-40,  0,-30,-30, 20,-10,  0,-10,  0,-10,-30,-40,-20, 10;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='Q'; M=-10,  0,-30,  0, 20,-40,-20, 10,-20, 10,-20,  0,  0,-10, 60, 10,  0,-10,-30,-20,-10, 40;
/M: SY='V'; M= -5,-30,-19,-34,-29,  1,-34,-29, 38,-25, 17, 15,-26,-26,-25,-24,-16, -5, 39,-25, -5,-29;
/M: SY='Q'; M=-10, -2,-29, -2, 18,-37,-21,  8,-18,  8,-16,  1, -2,-11, 55,  8, -2,-10,-28,-20, -9, 36;
/M: SY='A'; M= 38,-15,-11,-23,-15,-15, -8,-22,  1,-13, -5, -5,-14,-14,-14,-21,  5, -1, 10,-22,-17,-15;
/M: SY='T'; M=  4, -2,-12,-10, -9,-12,-17,-20,-11,-10,-12,-11, -2, -4,-10,-11, 18, 41, -2,-30,-12,-10;
/M: SY='T'; M=  3,  0,-14, -9, -7,-14,-16,-17,-11, -3,-14,-10,  2,-11, -7, -6, 14, 29, -3,-28,-12, -7;
/M: SY='S'; M=  8, -2,-18, -6,  3,-22,-13,-11,-17,  6,-18,-10, -1,-10,  5, -1, 10,  9,-11,-26,-14,  4;
/M: SY='T'; M=  1, -8,-16,-13,-10,-13,-16,-20, -9, -2,-12, -8, -7,-15,-10, -6,  7, 20,  2,-21,-11,-10;
/M: SY='T'; M=  4, -6,-16,-11, -8,-11,-15,-14, -8, -7, -8, -7, -3,-11, -8, -9,  7, 14, -3,-25, -8, -9;
/I:         E1=0;

• UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  
• Total number of hits in UniProtKB/Swiss-Prot: 111 hits in 22 different sequences
  
• Number of hits on proteins that are known to belong to the set under consideration: 111 hits in 22 different sequences
  
• Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  
• Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  
• Number of known missed hits: 0
  
• Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  
• Precision (true hits / (true hits + false positives)): 100.00 %
  
• Recall (true hits / (true hits + false negatives)): 100.00 %
  

• MATRIX_TYPE: protein_domain
  
• Scaling database: UniProtKB/Swiss-Prot: window20_shuffled
  
• Matrix author: K_Hofmann
  
• Taxonomic range: Eukaryotes
  
• Maximum known number of repetitions of the pattern in a single protein: 13
  
• FT_KEY: REPEAT
  
• FT_DESC: PIR1/2/3 repeat
  
• VERSION: 1
  

ANS1_YEAST  (P38832), CIS3_YEAS6  (B5VL27), CIS3_YEAS7  (A6ZQH4), 
CIS3_YEAST  (P47001), CWP1_YEAST  (P28319), CWP2_YEAST  (P43497), 
HS150_YEAS1 (B3LPW4), HS150_YEAS6 (B5VL26), HS150_YEAS7 (A6ZQH3), 
HS150_YEAST (P32478), PIR1_YEAS1  (B3LQU0), PIR1_YEAS7  (A6ZZG0), 
PIR1_YEAST  (Q03178), PIR3_YEAS1  (B3LQU1), PIR3_YEAS7  (A6ZZG1), 
PIR3_YEAST  (Q03180), PIR5_YEAS1  (B3LPW3), PIR5_YEAS6  (B5VL25), 
PIR5_YEAS7  (A6ZQH2), PIR5_YEAST  (P46999), TIR1_YEAST  (P10863), 
TIR2_YEAST  (P33890)

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment