Entry: PS50256

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General information about the entry

Entry name [info] PIR_REPEAT_2
Accession [info] PS50256
Entry type [info] MATRIX
Date [info] DEC-2001 (CREATED); OCT-2013 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00718
Associated ProRule [info] PRU00149

Name and characterization of the entry

Description [info] Yeast PIR proteins repeats profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=19;
/DISJOINT: DEFINITION=PROTECT; N1=2; N2=18;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.2710; R2=0.01882878; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=315.48980; R2=8.73469; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=437; N_SCORE=8.5; H_SCORE=3670; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=330; N_SCORE=6.5; H_SCORE=3207; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='A'; M= 15, -5,-16,-10, -6,-19,-11,-16,-15, -1,-15,-11, -4, -6, -6, -3,  9, 11, -6,-26,-16, -6;
/M: SY='A'; M= 14,  1,-16, -5, -3,-21, -8,  2,-17, -6,-18,-11,  4,-12,  0, -8, 13,  7,-11,-28,-13, -2;
/M: SY='A'; M= 30,-15,-15,-22,-14,-17, -5,-22, -2,-14, -8, -6,-14, -6,-15,-21,  2, -3,  6,-22,-18,-15;
/M: SY='V'; M= 14,-23,-16,-30,-23, -7,-23,-27, 22,-20,  6,  6,-20,-20,-20,-23, -6, -3, 27,-24,-10,-23;
/M: SY='S'; M= 12, -3,-11, -4, -3,-14, -2,-12,-18,-11,-26,-18,  6,-11, -3,-12, 33, 16, -8,-35,-17, -3;
/M: SY='Q'; M= -9, -3,-28, -3, 15,-36,-21,  6,-15,  7,-17,  1, -3,-12, 51,  7, -1, -9,-22,-21,-10, 33;
/M: SY='I'; M= -7,-27,-26,-35,-27, -2,-35,-28, 41,-27, 14, 15,-18,-20,-19,-27,-13, -6, 28,-23, -3,-27;
/M: SY='G'; M= -1, -2,-20, -5, -9,-21, 15, -7,-26, -9,-24,-16,  7,-15, -7, -4, 13,  7,-18,-29,-18, -9;
/M: SY='D'; M=-20, 50,-30, 70, 20,-40,-10,  0,-40,  0,-30,-30, 20,-10,  0,-10,  0,-10,-30,-40,-20, 10;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='Q'; M=-10,  0,-30,  0, 20,-40,-20, 10,-20, 10,-20,  0,  0,-10, 60, 10,  0,-10,-30,-20,-10, 40;
/M: SY='V'; M= -5,-30,-19,-34,-29,  1,-34,-29, 38,-25, 17, 15,-26,-26,-25,-24,-16, -5, 39,-25, -5,-29;
/M: SY='Q'; M=-10, -2,-29, -2, 18,-37,-21,  8,-18,  8,-16,  1, -2,-11, 55,  8, -2,-10,-28,-20, -9, 36;
/M: SY='A'; M= 38,-15,-11,-23,-15,-15, -8,-22,  1,-13, -5, -5,-14,-14,-14,-21,  5, -1, 10,-22,-17,-15;
/M: SY='T'; M=  4, -2,-12,-10, -9,-12,-17,-20,-11,-10,-12,-11, -2, -4,-10,-11, 18, 41, -2,-30,-12,-10;
/M: SY='T'; M=  3,  0,-14, -9, -7,-14,-16,-17,-11, -3,-14,-10,  2,-11, -7, -6, 14, 29, -3,-28,-12, -7;
/M: SY='S'; M=  8, -2,-18, -6,  3,-22,-13,-11,-17,  6,-18,-10, -1,-10,  5, -1, 10,  9,-11,-26,-14,  4;
/M: SY='T'; M=  1, -8,-16,-13,-10,-13,-16,-20, -9, -2,-12, -8, -7,-15,-10, -6,  7, 20,  2,-21,-11,-10;
/M: SY='T'; M=  4, -6,-16,-11, -8,-11,-15,-14, -8, -7, -8, -7, -3,-11, -8, -9,  7, 14, -3,-25, -8, -9;
/I:         E1=0;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 115 in 23 different sequences
Number of true positive hits 115 in 23 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20_shuffled
Author [info] K_Hofmann
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 13
Feature key [info] REPEAT
Feature description [info] PIR1/2/3 repeat
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
23 sequences

ANS1_YEAST  (P38832), CIS3_YEAS6  (B5VL27), CIS3_YEAS7  (A6ZQH4), 
CIS3_YEAST  (P47001), CWP1_YEAST  (P28319), CWP2_YEAST  (P43497), 
HS150_YEAS1 (B3LPW4), HS150_YEAS6 (B5VL26), HS150_YEAS7 (A6ZQH3), 
HS150_YEAST (P32478), PIR1_CANAL  (Q59SF7), PIR1_YEAS1  (B3LQU0), 
PIR1_YEAS7  (A6ZZG0), PIR1_YEAST  (Q03178), PIR3_YEAS1  (B3LQU1), 
PIR3_YEAS7  (A6ZZG1), PIR3_YEAST  (Q03180), PIR5_YEAS1  (B3LPW3), 
PIR5_YEAS6  (B5VL25), PIR5_YEAS7  (A6ZQH2), PIR5_YEAST  (P46999), 
TIR1_YEAST  (P10863), TIR2_YEAST  (P33890)
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