Entry: PS50816

General information about the entry

Entry name [info] NAF
Accession [info] PS50816
Entry type [info] MATRIX
Date [info] NOV-2003 (CREATED); OCT-2013 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC50816
Associated ProRule [info] PRU00256

Name and characterization of the entry

Description [info] NAF domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=25;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=23;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.3494120; R2=0.0163142; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=74.04878; R2=9.82114; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=500; N_SCORE=8.5; H_SCORE=4376; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=378; N_SCORE=6.5; H_SCORE=3777; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='E'; M= -6,  2,-23,  7, 19,-24,-18, -9,-19,  1,-15,-12, -5,  2,  2, -7, -3, -6,-16,-30,-18, 10;
/M: SY='R'; M= -3, -1,-23, -2,  4,-24, -5, -6,-22,  7,-22, -9,  3,-12,  7,  8,  6, -1,-17,-27,-16,  5;
/M: SY='P'; M= -1,-18,-28,-13, -6,-22,-15,-20,-12,-13,-19,-13,-16, 45,-12,-19, -3, -4,-15,-29,-24,-12;
/M: SY='T'; M=  2, -4,-18, -8, -3,-16,-16,-12,-11,  0,-11, -8, -1,-12, -4,  0,  3,  7, -5,-27,-13, -4;
/M: SY='S'; M= -2, -2,-15, -6, -8,-10,-14, -8, -8,-12,-12, -7,  3,-14, -6,-11,  7,  6, -6,-29,-10, -8;
/M: SY='L'; M=-11,-27,-22,-32,-23,  9,-29,-15, 25,-24, 32, 31,-24,-25,-15,-19,-24,-10, 13,-18,  2,-19;
/M: SY='N'; M= -9, 36,-19, 17, -1,-19, -2,  7,-19, -1,-28,-19, 53,-19, -1, -1, 11,  6,-27,-39,-19, -1;
/M: SY='A'; M= 50,-10,-10,-20,-10,-20,  0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10,  0,  0,-20,-20,-10;
/M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20,  0,-30, 10,  0,-20,-30,-40,-20,-20,-10,  0, 10, 30,-30;
/M: SY='D'; M=-13, 27,-29, 39, 29,-35,-15,  6,-33,  3,-24,-20, 10, -8, 15, -4,  0,-10,-29,-33,-16, 22;
/M: SY='L'; M=-11,-30,-24,-35,-25,  9,-34,-24, 32,-29, 34, 20,-25,-25,-20,-24,-25,-10, 18,-18,  2,-25;
/M: SY='I'; M=-10,-30,-29,-39,-29,  1,-39,-29, 47,-30, 23, 20,-21,-21,-20,-29,-21,-10, 28,-20,  0,-29;
/I:         I=-15; MI=0; MD=-32; IM=0; DM=-32;
/M: SY='S'; M= 15, -4,-13, -7, -5,-20,  5,-14,-17,-12,-24,-16,  4,-11, -5,-14, 28, 12, -8,-33,-20, -5;
/I:         I=-15; MI=0; MD=-32; IM=0; DM=-32;
/M: SY='L'; M=-10,-22,-11,-26,-19,  9,-22,-13,  5,-18, 17, 17,-19,-25,-14,-11,-15, -6,  2,-19,  0,-16;
/M: SY='S'; M= 12,  1,-10, -1, -1,-20,  0,-10,-19,-10,-29,-19, 11,-10, -1,-10, 37, 18,-10,-39,-20, -1;
/I:         I=-13; MD=-27;
/M: SY='S'; M=  0, -3,-21, -3,  6,-25,-12, -8,-20,  3,-23,-13,  0,  3, 11,  2, 12,  6,-17,-28,-16,  7; D=-13;
/I:         I=-13; MI=-27; MD=-27; IM=-27; DM=-27;
/M: SY='G'; M=  1, -8,-22, -8,-14,-24, 47,-18,-33,-17,-25,-18, -1,-18,-17,-18,  1,-15,-24,-21,-25,-15; D=-13;
/I:         I=-13; DM=-27;
/M: SY='F'; M=-12,-26,-18,-30,-21, 35,-26,-18,  7,-27, 24,  7,-21,-27,-25,-18,-18, -7,  4, -9, 10,-21; D=-13;
/I:         I=-13; DM=-27;
/M: SY='D'; M=-15, 43,-26, 50, 12,-33, -4,  2,-33, -1,-30,-26, 31,-13, -1, -7,  5, -6,-29,-39,-20,  6;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 21,-30, 49, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='S'; M= 10,  1,-14,  2,  2,-23,  5,-11,-23, -9,-27,-20,  7,-10, -1,-11, 29, 11,-13,-35,-21,  0;
/M: SY='G'; M=  0,  1,-26, -3,-12,-26, 38,-13,-31,-12,-29,-19, 12,-12,-12,-14,  5,-10,-26,-26,-26,-12;
/M: SY='L'; M=-12,-29,-20,-32,-22, 20,-29,-19, 17,-29, 42, 20,-28,-29,-22,-19,-28,-10,  8,-15,  5,-21;
/M: SY='F'; M=-20,-30,-20,-40,-30, 78,-30,-20,  1,-30, 10,  1,-20,-30,-39,-20,-20,-10,  1,  9, 29,-30;
/M: SY='E'; M= -9, 10,-30, 19, 33,-31, -3, -5,-31,  2,-23,-20,  2, -4,  8, -6, -1,-12,-28,-29,-21, 20;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 59 in 59 different sequences
Number of true positive hits 59 in 59 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] NAF
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
59 sequences

CIPK1_ARATH (Q8RWC9), CIPK1_ORYSJ (Q9LGV5), CIPK2_ARATH (Q9LYQ8), 
CIPK2_ORYSJ (Q7X996), CIPK3_ARATH (Q2V452), CIPK3_ORYSJ (Q8LIG4), 
CIPK4_ARATH (Q9SUL7), CIPK4_ORYSJ (Q2QMI0), CIPK5_ARATH (Q9LEU7), 
CIPK5_ORYSJ (Q9LWM4), CIPK6_ARATH (O65554), CIPK6_ORYSJ (Q6Z9F4), 
CIPK7_ARATH (Q9XIW0), CIPK7_ORYSJ (Q75GK4), CIPK8_ARATH (Q9STV4), 
CIPK8_ORYSJ (Q5JLD8), CIPK9_ARATH (Q9MAM1), CIPK9_ORYSJ (Q10SC8), 
CIPKA_ARATH (Q9C562), CIPKA_ORYSJ (Q10LQ2), CIPKB_ARATH (O22932), 
CIPKB_ORYSJ (Q0JI49), CIPKC_ARATH (Q9SN43), CIPKC_ORYSJ (Q5JLS2), 
CIPKD_ARATH (O22971), CIPKD_ORYSJ (Q5QNM6), CIPKE_ARATH (Q9LZW4), 
CIPKE_ORYSJ (Q2QYM3), CIPKF_ARATH (P92937), CIPKF_ORYSJ (Q2RBF0), 
CIPKG_ARATH (Q9SEZ7), CIPKG_ORYSJ (Q6ERS4), CIPKH_ARATH (Q94C40), 
CIPKH_ORYSJ (Q75L42), CIPKI_ARATH (Q9LP51), CIPKI_ORYSJ (Q5W736), 
CIPKJ_ARATH (Q9FJ55), CIPKJ_ORYSJ (Q68Y49), CIPKK_ARATH (Q9FJ54), 
CIPKK_ORYSJ (Q60EY8), CIPKL_ARATH (Q94CG0), CIPKL_ORYSJ (Q0D4B2), 
CIPKM_ARATH (O80902), CIPKM_ORYSJ (Q5KQF5), CIPKN_ARATH (Q93VD3), 
CIPKN_ORYSJ (Q6ZLP5), CIPKO_ARATH (Q9LDI3), CIPKO_ORYSJ (Q69Q47), 
CIPKP_ARATH (Q8W1D5), CIPKP_ORYSJ (Q5Z6X0), CIPKQ_ARATH (Q84VQ3), 
CIPKQ_ORYSJ (Q6H7U5), CIPKR_ORYSJ (Q6ERS0), CIPKS_ORYSJ (A3B529), 
CIPKT_ORYSJ (Q7XIW5), CIPKU_ORYSJ (Q5JLQ9), CIPKV_ORYSJ (Q6X4A2), 
CIPKW_ORYSJ (Q2QY53), CIPKX_ORYSJ (Q2RAX3)
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PDB
[Detailed view]
2 PDB

2EHB; 2ZFD

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