Entry: PS50941

General information about the entry
Entry name CHIT_BIND_I_2
Accession number PS50941
Entry type MATRIX
Date NOV-2003 (CREATED); NOV-2003 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00025
Associated ProRule PRU00261
Name and characterization of the entry
DescriptionChitin-binding type-1 domain profile.
Matrix / Profile 
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=42;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=42;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2388287; R2=0.0049724; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1260; N_SCORE=7.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=857; N_SCORE=6.9; MODE=1; TEXT='RR';
/DEFAULT: M0=-10; D=-30; I=-30; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105;

                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='A'; M= 12,  1,-19, -1, -4,-19, -7, -9,-16, -5,-15,-12,  0,-13, -6, -9,  5, -1, -9,-24,-12, -5;
/M: SY='Q'; M= -4, -3,-29, -3, 10,-27, -7,  2,-22,  1,-21,-10, -1, -9, 18, -2, -2,-10,-24,-13,-11, 14;
/M: SY='Q'; M=-10,  6,-27,  4, 15,-27,-15,  3,-24, 12,-21,-11, 10,-11, 21, 19,  0, -6,-24,-26,-14, 17;
/M: SY='C'; M=-10,-20,118,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30, -9,-10,-10,-50,-30,-30;
/M: SY='G'; M= -2, -8,-29, -8,-17,-29, 56,-18,-35,-17,-27,-17, -1,-18,-17,-17, -1,-18,-26,-21,-27,-17;
/I:         I=-5; MD=-16;
/M: SY='R'; M= -6, -7,-22, -6,  0,-19,-13, -3,-19,  9,-19,-10, -2,  3,  2, 15,  0, -2,-14,-22,-12, -1; D=-5;
/I:         I=-5; MI=0; MD=-16; IM=0; DM=-16;
/M: SY='Q'; M= -6,  6,-20,  7, 10,-22,-11,  3,-16,  2,-14, -7,  3, -8, 21,  1,  0, -6,-18,-13, -8, 16; D=-5;
/I:         I=-5; DM=-16;
/M: SY='A'; M= 13, -9,-13,-14, -9, -4, -4,-12, -8, -5, -7, -6, -7,-10, -9, -8,  0, -3, -3,-12, -7, -9; D=-5;
/I:         I=-5; DM=-16;
/M: SY='G'; M= -1, -4,-22, -5,-10,-19, 31,-10,-25,-11,-21,-14,  1,-12, -9,-12,  2, -9,-20,-16,-15,-10; D=-5;
/I:         I=-5; DM=-16;
/M: SY='G'; M= -4,  2,-22,  0, -9,-18, 29, -9,-26, -9,-22,-15,  9,-16,-10, -6,  1,-10,-21,-20,-18,-10; D=-5;
/I:         I=-5; DM=-16;
/M: SY='A'; M=  8, -6,-18, -9, -3,-20, -3,-11,-16,  2,-15, -9, -4, -6,  0,  2,  2, -1,-10,-20,-15, -3; D=-5;
/I:         I=-5; DM=-16;
/M: SY='T'; M= -4,-13,-16,-14, -8, -6,-16,-15, -2,-10,  3, -2,-11,-11,-10, -7, -2,  6,  1,-23, -9,-10; D=-5;
/I:         I=-5; DM=-16;
/M: SY='C'; M=-10,-20,116,-30,-30,-17,-30,-30,-29,-30,-19,-19,-20,-40,-30,-30,-10,-10,-10,-48,-28,-30;
/M: SY='P'; M=  6,-12,-28,-10, -3,-25,-11,-14,-17, -9,-22,-15,-10, 38, -6,-16,  0, -4,-19,-28,-23, -7;
/M: SY='N'; M= -3, 10,-23,  6, -2,-22,  5, -5,-22, -7,-22,-16, 17, -9, -4, -9,  6, -2,-22,-31,-20, -3;
/M: SY='N'; M= -7, 13,-21,  8, -4,-25, 19, -7,-28, -7,-25,-18, 20,-18, -8, -8,  3, -8,-26,-31,-22, -6;
/M: SY='L'; M= -8,-21,-22,-23,-13,  1,-26,-12,  8,-14, 21, 14,-20,-24,-10, -6,-19, -8,  4,-18,  1,-12;
/I:         I=-8; MI=0; MD=-27; IM=0; DM=-27;
/M: SY='C'; M=-10,-20,115,-29,-29,-20,-30,-29,-30,-28,-20,-20,-19,-39,-29,-27,-10,-10,-10,-49,-29,-29;
/M: SY='C'; M=-10,-20,118,-30,-30,-20,-30,-30,-30,-29,-20,-20,-20,-40,-29,-28,-10,-10,-10,-50,-30,-30;
/M: SY='S'; M= 10,  0,-10,  0,  0,-20,  0,-10,-19,-10,-29,-20, 10,-10,  0,-10, 39, 20,-10,-40,-20,  0;
/M: SY='Q'; M= -6, -4,-26, -4, 11,-27,-20, -4,-15, 10,-17, -5, -3,-10, 23,  7, -2, -7,-15,-23,-12, 16;
/M: SY='W'; M=-11,-22,-29,-25,-21, 26,-19, -3,-10,-18, -6, -7,-19,-26,-19,-16,-19,-14,-13, 35, 33,-19;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='W'; M=-20,-30,-36,-32,-26, 30,-25, -8, -9,-18, -7, -9,-27,-30,-20,-16,-27,-18,-17, 74, 46,-21;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 69,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='T'; M= -4,  5,-17,  0, -6,-13,-10,-11,-12, -9,-12,-10,  9,-16, -8, -9,  9, 15, -9,-31,-13, -7;
/M: SY='T'; M=  0,  0,-16, -6,-10,-17,  3,-17,-19,-11,-18,-14,  3,-12,-10,-11, 17, 27,-10,-29,-16,-10;
/M: SY='D'; M= -3, 11,-25, 16, 13,-27,-10, -6,-24, -1,-23,-19,  5,  0,  2, -7,  5, -3,-20,-31,-18,  7;
/M: SY='D'; M= -1, 13,-27, 20, 19,-30, -9, -7,-27,  1,-23,-20,  3,  3,  3, -8,  1, -7,-23,-30,-21, 11;
/M: SY='Y'; M=-20,-19,-29,-20,-19, 30,-29, 24, -3,-12, -1,  0,-17,-29,-11,-10,-19,-11,-11, 21, 67,-19;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='G'; M= -1, -3,-22, -4,-11,-28, 41,-16,-34,-12,-29,-19,  4,-17,-13,-14,  5,-11,-25,-26,-26,-12;
/M: SY='E'; M= -4,  4,-25,  6,  7,-24, -8, -8,-23,  0,-23,-16,  3,  1,  1, -3,  4, -2,-20,-29,-18,  3;
/I:         I=-5; MI=0; MD=-17; IM=0; DM=-17;
/M: SY='G'; M= -2,  1,-26, -2,-13,-25, 44,-13,-34,-14,-29,-20, 10,-19,-14,-14,  4,-12,-27,-25,-25,-13;
/M: SY='C'; M=-10,-18,112,-27,-28,-20,-28,-29,-30,-29,-21,-20,-18,-38,-28,-29, -8, -9,-10,-49,-29,-28;
/M: SY='Q'; M=-10, -3,-29, -2, 15,-31,-20,  5,-19,  8,-17, -2, -3, -8, 42,  9, -3,-10,-25,-19, -8, 28;
/I:         I=-7; MI=0; MD=-25; IM=0; DM=-25;
/M: SY='S'; M=  4, -5,-16, -6, -9,-18, 17,-12,-24,-14,-26,-18,  3,-13, -9,-14, 20,  5,-16,-28,-16, -9;
/M: SY='Q'; M= -6,  0,-29, -1,  7,-31, -8, -2,-22,  2,-24,-11,  5,  6, 21,  1,  1, -7,-27,-26,-18, 13;
/M: SY='C'; M=-10,-19,115,-29,-29,-20,-30,-30,-29,-29,-20,-20,-19,-39,-29,-29, -9, -8,-10,-49,-29,-29;
/M: SY='B'; M= -9,  4,-22,  4, -2,-18, -7, -8,-23, -3,-22,-17,  4,-13, -5, -1,  2, -2,-19,-15,-10, -4;
/M: SY='G'; M=  1, -7,-22, -8, -8,-17,  3,-10,-17,-10,-18,-12, -3, -7, -7,-12,  3, -3,-14,-21, -9, -9;
/I:         E1=0; IE=-105; DE=-105;
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 99 hits in 67 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 99 hits in 67 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 6
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 99.00 %
Comments
  • MATRIX_TYPE: protein_domain
  • Scaling database: UniProtKB/Swiss-Prot: window20
  • Matrix author: N_Hulo
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 7
  • FT_KEY: DOMAIN
  • FT_DESC: Chitin-binding type-1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AGI1_WHEAT  (P10968), AGI2_WHEAT  (P02876), AGI3_WHEAT  (P10969), 
AGI_HORVU   (P15312), AGI_ORYSI   (Q01MB6), AGI_ORYSJ   (Q0JF21), 
AGI_URTDI   (P11218), AMP1A_LYMAR (P86521), AMP_AMARE   (Q5I2B2), 
AMP_IPONI   (P81591), AMP_TRIKH   (P85966), CBLE_VISAL  (P81859), 
CHAL_BRARA  (P81729), CHI12_ORYSJ (P25765), CHI1_GOSHI  (Q39799), 
CHI1_HORVU  (P11955), CHI1_ORYSJ  (Q42993), CHI1_SOLTU  (P52403), 
CHI1_THECC  (Q41596), CHI1_TOBAC  (P08252), CHI2_BRANA  (Q09023), 
CHI2_GOSHI  (Q39785), CHI2_ORYSJ  (Q7DNA1), CHI2_PEA    (P21226), 
CHI2_SOLTU  (P52404), CHI2_TOBAC  (P24091), CHI3_ORYSJ  (P24626), 
CHI3_SOLTU  (P52405), CHI3_TOBAC  (P29059), CHI4_BRANA  (Q06209), 
CHI4_ORYSJ  (O04138), CHI4_PHAVU  (P27054), CHI4_SOLTU  (P52406), 
CHI5_ORYSJ  (Q7Y1Z0), CHI5_PHAVU  (P36361), CHI6_ORYSJ  (Q6K8R2), 
CHI6_POPTR  (P16579), CHI7_ORYSI  (Q9SAY3), CHI7_ORYSJ  (Q7Y1Z1), 
CHI8_POPTR  (P16061), CHI9_ORYSJ  (Q688M5), CHIA_MAIZE  (P29022), 
CHIA_SECCE  (Q9FRV1), CHIB_ARATH  (P19171), CHIB_MAIZE  (P29023), 
CHIB_POPTR  (P29031), CHIB_VITVI  (P51613), CHIC_POPTR  (P29032), 
CHIC_SOLLC  (Q05538), CHIP_BETVU  (P42820), CHIT_DIOJA  (P80052), 
CHIT_PHAVU  (P06215), CHIT_SOLTU  (P05315), CHIX_PEA    (P36907), 
EAP1_EUCUL  (P83596), EAP2_EUCUL  (P83597), HEVE_HEVBR  (P02877), 
HEVL_ARATH  (P43082), HEVP_HEVBR  (P80359), KTXA_KLULA  (P09805), 
LECB_PHYAM  (Q9AVB0), LECC_PHYAM  (Q9AYP9), LECT_SOLTU  (Q9S8M0), 
LED2_PHYAM  (P83790), MLX56_MORAL (A7XQ02), WIN1_SOLTU  (P09761), 
WIN2_SOLTU  (P09762)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AMP_AMACA   (P27275)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CHIB_PEA    (P21227), CHIT_ACTCH  (P86473), IAMY_COILA  (P15326), 
IPLAA_MORAL (P86799), IPLAB_MORAL (P86800), LECA_PHYAM  (P84282)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1EN2; 1ENM; 1HEV; 1IQB; 1K7T; 1K7U; 1K7V; 1MMC; 1P3Z; 1P9G; 1P9Z; 1Q9B; 1T0W; 1UHA; 1ULK; 1ULM; 1ULN; 1WGC; 1WGT; 1WKX; 1ZUV; 2CWG; 2DKV; 2LB7; 2UVO; 2WGC; 2X3T; 2X52; 4AML; 7WGA; 9WGA;

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