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PROSITE entry PS51004


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51004
Entry name [info] SEMA
Accession [info] PS51004
Entry type [info] MATRIX
Date [info] 01-AUG-2004 CREATED;
01-AUG-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51004
Associated ProRule [info] PRU00352

Name and characterization of the entry

Description [info] Sema domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=468;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=463;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5375669; R2=0.0184792; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=323; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=215; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-10; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 134 in 134 different sequences
Number of true positive hits 134 in 134 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] Sema
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
134 sequences

MET_AOTNA   (Q07DV8), MET_ATEAB   (Q00PJ8), MET_ATEGE   (Q09YL1), 
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PDB
[Detailed view]
51 PDB

1OLZ; 1Q47; 1SHY; 2UZX; 2UZY; 3AFC; 3AL8; 3AL9; 3NVN; 3NVQ; 3NVX; 3OKT;
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