ID   MULTIHEME_CYTC; MATRIX.
AC   PS51008;
DT   01-AUG-2004 CREATED; 01-AUG-2004 DATA UPDATE; 27-MAR-2024 INFO UPDATE.
DE   Multiheme cytochrome c family profile.
MA   /GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=15; TOPOLOGY=CIRCULAR;
MA   /DISJOINT: DEFINITION=PROTECT; N1=1; N2=15;
MA   /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8475713; R2=0.0151062; TEXT='NScore';
MA   /CUT_OFF: LEVEL=0; SCORE=375; N_SCORE=7.5; MODE=1; TEXT='R';
MA   /CUT_OFF: LEVEL=-1; SCORE=275; N_SCORE=6.0; MODE=1; TEXT='RR';
MA   /DEFAULT: M0=-9; D=-20; I=-20; B0=-200; B1=-200; E0=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
MA   /I: B0=0; B1=0; E0=0; E1=0; BI=-105; BD=-105; IE=-105; DE=-105;
MA   /M: SY='N'; M=-3,-2,-70,-4,-1,-19,-18,-10,-15,-2,-14,-9,1,-11,-2,-4,-1,-4,-12,-24,-13,-2;
MA   /I: I0=0; I=-1;
MA   /M: SY='N'; M=-8,0,-70,-1,-2,-16,-12,-80,-16,-1,-15,-10,0,-7,-2,-1,-1,0,-14,-23,-10,-3;
MA   /M: SY='E'; M=-4,2,-90,3,5,-24,-5,-30,-20,-3,-20,-13,2,-3,2,-4,2,-5,-18,-28,-17,2;
MA   /M: SY='A'; M=1,-8,-70,-8,-1,-19,-17,-30,-8,1,-9,-5,-5,-10,-3,-3,-4,-4,-3,-25,-13,-3;
MA   /M: SY='S'; M=-2,1,-70,-2,-4,-5,-3,-30,-17,-8,-16,-12,3,-15,-6,0,6,6,-12,-24,-12,-5;
MA   /M: SY='C'; M=*,*,120,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*;
MA   /M: SY='A'; M=6,-14,-80,-19,-14,-10,-14,-55,1,-11,-3,-1,-11,-48,-10,-9,-1,1,5,-19,-7,-13;
MA   /M: SY='S'; M=2,8,-80,7,1,-21,0,-58,-20,-6,-20,-15,7,-42,-1,-9,11,7,-15,-29,-14,0;
MA   /M: SY='C'; M=*,*,120,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*,*;
MA   /M: SY='H'; M=*,*,*,*,*,*,*,120,*,*,*,*,*,*,*,*,*,*,*,*,*,*;
MA   /M: SY='N'; M=-1,-1,-70,-4,-4,-18,-25,-10,-13,-3,-14,-7,3,-16,-10,-4,3,0,-4,-28,-14,-3;
MA   /M: SY='E'; M=-5,-1,-70,0,2,-19,-9,-30,-16,-4,-16,-10,-2,-1,-2,-7,-2,-6,-15,-25,-14,-1;
MA   /M: SY='E'; M=-6,-2,-70,-2,3,-19,-25,-30,-15,-1,-15,-9,-2,-5,2,-4,-3,-5,-15,-23,-8,1;
MA   /M: SY='P'; M=-3,1,-70,2,1,-17,-8,-30,-20,-5,-20,-15,0,3,-6,-9,2,-2,-16,-26,-15,-3;
MA   /I: I0=0; I=-1;
MA   /M: SY='E'; M=-1,0,-110,1,6,-20,-10,-30,-19,-1,-18,-11,-1,-4,4,-5,0,-5,-17,-24,-12,4;
NR   /RELEASE=2024_02,571282;
NR   /TOTAL=165(157); /POSITIVE=165(157); /UNKNOWN=0(0); /FALSE_POS=0(0);
NR   /FALSE_NEG=5; /PARTIAL=3;
CC   /MATRIX_TYPE=protein_domain;
CC   /SCALING_DB=window20;
CC   /AUTHOR=N_Hulo;
CC   /TAXO-RANGE=A??P?; /MAX-REPEAT=3;
CC   /VERSION=2;
DR   P33325    , C554_CHLAA , T; Q57142    , C554_NITEU , T;
DR   C8WLM0    , CGR1_EGGLE , T; P38554    , CYC32_DESNO, T;
DR   Q727P6    , CYC32_DESVH, T; P94690    , CYC3A_DESAF, T;
DR   P94691    , CYC3B_DESAF, T; P00134    , CYC3_DESDE , T;
DR   P00131    , CYC3_DESVH , T; P00135    , CYC3_MARSL , T;
DR   P00133    , CYC3_MEGG1 , T; O33731    , CYC3_SHEFN , T;
DR   Q9RN68    , CYC9_DESDA , T; D7ALQ0    , CYCB_GEOSK , T;
DR   Q749K5    , CYCB_GEOSL , T; D7ALP6    , CYCC_GEOSK , T;
DR   Q749L1    , CYCC_GEOSL , T; O82947    , CYCR_ALLVD , T;
DR   P07173    , CYCR_BLAVI , T; P26278    , CYCR_ROSDO , T;
DR   P51758    , CYCR_RUBGI , T; D2Z0P5    , CYCR_THETI , T;
DR   Q50926    , CYCX_NITEU , T; Q1Q6L7    , ENCAP_KUEST, T;
DR   Q9Z4P0    , FRD2_SHEFN , T; Q07WU7    , FRDA_SHEFN , T;
DR   P0C278    , FRDA_SHEFR , T; P83223    , FRDA_SHEON , T;
DR   Q50925    , HAO_NITEU  , T; Q1PW30    , HDH_KUEST  , T;
DR   O29747    , HMEE_ARCFU , T; P24092    , HMWC_DESVH , T;
DR   Q747K6    , IMCH_GEOSL , T; V6F2B6    , MAME_MAGGM , T;
DR   Q2W8Q8    , MAME_MAGSA , T; V6F2C2    , MAMX_MAGGM , T;
DR   Q2W8K4    , MAMX_MAGSA , T; Q50233    , MAUG_METME , T;
DR   Q8EJI6    , MCCA_SHEON , T; Q7MSJ8    , MCCA_WOLSU , T;
DR   P0DSN3    , MTRA_SHEB8 , T; P0DSN4    , MTRC_SHEB8 , T;
DR   Q8VU46    , NAPB_AZOBR , T; Q8KY07    , NAPB_BRAJP , T;
DR   Q53177    , NAPB_CERS4 , T; O88160    , NAPB_CERSP , T;
DR   P39186    , NAPB_CUPNH , T; P0ABL3    , NAPB_ECOLI , T;
DR   P44654    , NAPB_HAEIN , T; Q9Z3W3    , NAPB_NEOGA , T;
DR   Q56351    , NAPB_PARPN , T; P0ABL4    , NAPB_SHIFL , T;
DR   Q7M963    , NAPB_WOLSU , T; Q53178    , NAPC_CERS4 , T;
DR   P0ABL7    , NAPC_ECO57 , T; P0ABL6    , NAPC_ECOL6 , T;
DR   P0ABL5    , NAPC_ECOLI , T; P44655    , NAPC_HAEIN , T;
DR   Q56352    , NAPC_PARPN , T; P24038    , NIRT_STUST , T;
DR   L0DSL2    , NIR_THIND  , T; A8ERP8    , NRFA_ALIB4 , T;
DR   Q5E4J7    , NRFA_ALIF1 , T; B5FEY0    , NRFA_ALIFM , T;
DR   B6EH98    , NRFA_ALISL , T; Q5LI95    , NRFA_BACFN , T;
DR   Q64ZA7    , NRFA_BACFR , T; Q8A7V7    , NRFA_BACTN , T;
DR   A8AN26    , NRFA_CITK8 , T; Q6ARF1    , NRFA_DESPS , T;
DR   Q72EF3    , NRFA_DESVH , T; A7ZUU5    , NRFA_ECO24 , T;
DR   B7UPN8    , NRFA_ECO27 , T; B7MJT8    , NRFA_ECO45 , T;
DR   B7LB19    , NRFA_ECO55 , T; P0ABL0    , NRFA_ECO57 , T;
DR   B5Z1D1    , NRFA_ECO5E , T; B7NSN2    , NRFA_ECO7I , T;
DR   B7N2T7    , NRFA_ECO81 , T; B7M7Y3    , NRFA_ECO8A , T;
DR   C5A163    , NRFA_ECOBW , T; B1XCV6    , NRFA_ECODH , T;
DR   A8A7H1    , NRFA_ECOHS , T; A1AIR1    , NRFA_ECOK1 , T;
DR   Q0T9X8    , NRFA_ECOL5 , T; Q8CVI1    , NRFA_ECOL6 , T;
DR   B1IUI1    , NRFA_ECOLC , T; P0ABK9    , NRFA_ECOLI , T;
DR   B7NG13    , NRFA_ECOLU , T; B6I5T8    , NRFA_ECOSE , T;
DR   B1LPN5    , NRFA_ECOSM , T; Q1R3J6    , NRFA_ECOUT , T;
DR   C5BES4    , NRFA_EDWI9 , T; Q7VNX8    , NRFA_HAEDU , T;
DR   Q4QLL8    , NRFA_HAEI8 , T; P45017    , NRFA_HAEIN , T;
DR   Q06PW6    , NRFA_MANHA , T; Q65RI4    , NRFA_MANSM , T;
DR   C6BYZ2    , NRFA_MARSD , T; A6L890    , NRFA_PARD8 , T;
DR   Q9CPL4    , NRFA_PASMU , T; Q6D613    , NRFA_PECAS , T;
DR   C6DK80    , NRFA_PECCP , T; Q6LSQ7    , NRFA_PHOPR , T;
DR   Q7MTW1    , NRFA_PORGI , T; B5F2F2    , NRFA_SALA4 , T;
DR   A9MGK5    , NRFA_SALAR , T; Q57GV0    , NRFA_SALCH , T;
DR   B5FRF3    , NRFA_SALDC , T; B5QZA1    , NRFA_SALEP , T;
DR   B5R941    , NRFA_SALG2 , T; B4TEB5    , NRFA_SALHS , T;
DR   B4T1X2    , NRFA_SALNS , T; Q5PJ02    , NRFA_SALPA , T;
DR   A9N1R7    , NRFA_SALPB , T; C0Q554    , NRFA_SALPC , T;
DR   B5BJZ8    , NRFA_SALPK , T; B4TRK5    , NRFA_SALSV , T;
DR   Q8Z1Q9    , NRFA_SALTI , T; Q8ZKF5    , NRFA_SALTY , T;
DR   A1S3A0    , NRFA_SHEAM , T; Q087T3    , NRFA_SHEFN , T;
DR   Q8EAC7    , NRFA_SHEON , T; A4Y382    , NRFA_SHEPC , T;
DR   A0KSX7    , NRFA_SHESA , T; A8FRR9    , NRFA_SHESH , T;
DR   Q0HMH8    , NRFA_SHESM , T; Q0HRB0    , NRFA_SHESR , T;
DR   A1RNQ3    , NRFA_SHESW , T; B1KFU9    , NRFA_SHEWM , T;
DR   B2TXA4    , NRFA_SHIB3 , T; Q31TS5    , NRFA_SHIBS , T;
DR   Q83P93    , NRFA_SHIFL , T; Q3YUR5    , NRFA_SHISS , T;
DR   Q9Z4P4    , NRFA_SULDE , T; Q87ND9    , NRFA_VIBPA , T;
DR   Q8D8E5    , NRFA_VIBVU , T; Q7MM23    , NRFA_VIBVY , T;
DR   Q9S1E5    , NRFA_WOLSU , T; P0ABL2    , NRFB_ECOL6 , T;
DR   P0ABL1    , NRFB_ECOLI , T; P45016    , NRFB_HAEIN , T;
DR   Q72EF4    , NRFH_DESVH , T; Q9S1E6    , NRFH_WOLSU , T;
DR   P0DV45    , NRHAO_KUEST, T; Q47CW8    , PCRC_DECAR , T;
DR   P0DOV3    , QRCA_DESVH , T; O33434    , SOXA_PARPN , T;
DR   P58359    , TORC_ECO57 , T; P33226    , TORC_ECOLI , T;
DR   P58361    , TORY_ECO57 , T; P52005    , TORY_ECOLI , T;
DR   P44799    , TORY_HAEIN , T; O29031    , Y1237_ARCFU, T;
DR   P0AD04    , YEBS_ECO57 , T; P0AD03    , YEBS_ECOLI , T;
DR   Q06536    , YFCC_ALLVD , T;
DR   P81149    , CYC31_DESVU, P; P81151    , CYC32_DESVU, P;
DR   P81079    , CYC35_DESAC, P;
DR   P00136    , CYC31_DESNO, N; P00137    , CYC3_DESAC , N;
DR   P00132    , CYC3_DESVM , N; P81040    , CYCX_DESDA , N;
DR   Q8EIJ4    , NAPB_SHEON , N;
3D   19HC; 1A2I; 1AQE; 1BVB; 1CZJ; 1D4C; 1D4D; 1D4E; 1DXR; 1E39; 1EHJ; 1F22;
3D   1FGJ; 1FS7; 1FS8; 1FS9; 1FT5; 1FT6; 1GU6; 1GWS; 1GX7; 1H21; 1H29; 1HH5;
3D   1IT1; 1J0O; 1J0P; 1JNI; 1JRX; 1JRY; 1JRZ; 1KSS; 1KSU; 1KWJ; 1L3O; 1LJ1;
3D   1LM2; 1M64; 1MDV; 1NEW; 1OFW; 1OFY; 1OGY; 1P2E; 1P2H; 1PRC; 1Q9I; 1QDB;
3D   1QJD; 1QN0; 1QN1; 1QO8; 1R2C; 1VRN; 1WAD; 1WR5; 1Y0P; 2B7R; 2B7S; 2BPN;
3D   2BQ4; 2C1D; 2CDV; 2CTH; 2CVC; 2CY3; 2CYM; 2E80; 2E81; 2EWI; 2EWK; 2EWU;
3D   2FFN; 2I5N; 2J7A; 2JBL; 2K3V; 2OT4; 2OZY; 2P0B; 2PRC; 2RDZ; 2RF7; 2VR0;
3D   2WJM; 2WJN; 2X5U; 2X5V; 2YXC; 2YYW; 2YYX; 2Z47; 2ZO5; 3BNF; 3BNG; 3BNH;
3D   3BNJ; 3CAO; 3CAR; 3D1I; 3D38; 3F29; 3FO3; 3G7F; 3GM6; 3L1T; 3LG1; 3LGQ;
3D   3ML1; 3MMO; 3O5A; 3OWM; 3PRC; 3RKH; 3S7W; 3SCE; 3T6D; 3T6E; 3TOR; 3UBR;
3D   3UU9; 3WMM; 4AC5; 4CAS; 4FAS; 4L38; 4L3X; 4L3Y; 4L3Z; 4N4N; 4N4O; 4Q0T;
3D   4Q17; 4Q1O; 4Q4U; 4Q5B; 4Q5C; 4RKM; 4RKN; 4V8K; 4WJY; 5B5M; 5B5N; 5M7J;
3D   5M7K; 5M7L; 5NJ4; 5O4C; 5O64; 5PRC; 5Y5S; 6ET5; 6HIF; 6M0P; 6M0Q; 6P73;
3D   6PRC; 6QYC; 6R2Q; 6ZHW; 6ZI4; 6ZI5; 6ZI6; 6ZI9; 6ZIA; 6ZID; 7C52; 7PRC;
3D   7Q7P; 7Q7Q;
DO   PDOC00169;
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