Entry: PS51056

General information about the entry

Entry name [info] ITAM_2
Accession [info] PS51056
Entry type [info] MATRIX
Date [info] JAN-2005 (CREATED); OCT-2013 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC51055
Associated ProRule [info] PRU00379

Name and characterization of the entry

Description [info] ITAM motif hantavirus type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=24;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=22;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3976821; R2=0.0112796; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=-255.33333; R2=10.88889; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=1029; N_SCORE=13.0; H_SCORE=9980; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=453; N_SCORE=6.5; H_SCORE=4666; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-20; I=-20; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='W'; M=-15,-19,-40,-19, -9,-11,-20,-20,-25, 16,-25,-15,-19,-20, -5,  6,-25,-20,-25, 62,  9, -5;
/M: SY='R'; M= 14,-10,-20,-15, -5,-20,-10,-10,-20, 11,-15,-10, -5,-15,  0, 26,  0, -5,-10,-20,-15, -5;
/M: SY='G'; M=-10,-10,-30,-10,-10,-25, 26,-10,-35,  4,-25,-15,  0,-20, -5, 24, -5,-15,-25,-20,-20,-10;
/M: SY='C'; M=-10,-25, 52,-30,-25, -5,-30,-25, -6,-30, 14, -1,-25,-35,-25,-25,-20,-10,  0,-35,-15,-25;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20,  0,-10,  0,  0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='T'; M=  0,  0,-10,-10,-10,-10,-20,-20,-10,-10,-10,-10,  0,-10,-10,-10, 20, 50,  0,-30,-10,-10;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='N'; M=  0, 19,-15, 10,  0,-20,  0,  0,-20, -5,-30,-20, 34,-15,  0, -5, 25, 10,-20,-40,-20,  0;
/M: SY='V'; M= -5,-30,-15,-30,-25,  5,-30,-25, 25,-25, 29, 15,-30,-30,-25,-20,-20, -5, 31,-25, -5,-25;
/M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20,  0,-30, 10,  0,-20,-30,-40,-20,-20,-10,  0, 10, 30,-30;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20,  0,-10,  0,  0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20;
/M: SY='R'; M=-15, -5,-30, -5,  5,-25,-20, -5,-30, 40,-25,-10,  0,-15, 10, 51,-10,-10,-20,-20,-10,  5;
/M: SY='S'; M= 10,  0,-10,  0,  0,-20,  0,-10,-20,-10,-30,-20, 10,-10,  0,-10, 40, 20,-10,-40,-20,  0;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='F'; M=-20,-25,-25,-30,-25, 56,-30, -1,  0,-20,  5,  0,-20,-30,-25,-15,-20,-10, -5, 20, 54,-25;
/M: SY='I'; M= -5,-30,-20,-35,-30,  0,-35,-30, 40,-25, 15, 15,-25,-25,-25,-25,-15, -5, 40,-25, -5,-30;
/M: SY='G'; M= -5,-20,-25,-20,-20,-11, 21,-20,-11,-25,  9, -1,-15,-25,-20,-20,-15,-15,-11,-20,-15,-20;
/M: SY='L'; M= -5,-15,-15,-20,-15,  0,-25,-20,  5,-20, 21,  5,-15,-20,-15,-15, -6, 19,  5,-25, -5,-15;
/M: SY='M'; M= -5,-25,-15,-30,-25,  0,-25,-15, 25,-15, 15, 34,-25,-25,-15,-15,-15, -5, 31,-25, -5,-20;
/M: SY='W'; M=-20,-40,-50,-40,-30, 10,-20,-30,-20,-20,-20,-20,-40,-30,-20,-20,-40,-30,-30,150, 30,-20;
/M: SY='C'; M= -5,-10, 57,-20,-20,-15,-25,-25,-20,-20,-15,-15,-10,-25,-20,-20,  5, 19, -5,-40,-20,-20;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 13 in 13 different sequences
Number of true positive hits 13 in 13 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] V_Lesaux
Taxonomic range [info] Eukaryotic viruses
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] ITAM
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
13 sequences

GP_HANTB    (P28728), GP_HANTH    (P16493), GP_HANTL    (P16853), 
GP_HANTV    (P08668), GP_NYV      (Q83887), GP_PHV      (P27315), 
GP_PUUMG    (P21400), GP_PUUMK    (P41265), GP_PUUMP    (P41266), 
GP_PUUMS    (P27312), GP_SEOU8    (P33455), GP_SEOUR    (P28729), 
GP_SEOUS    (P17880)
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