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Entry: PS51073

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General information about the entry

Entry name [info] RPEL
Accession [info] PS51073
Entry type [info] MATRIX
Date [info] JAN-2005 (CREATED); OCT-2013 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51073
Associated ProRule [info] PRU00401

Name and characterization of the entry

Description [info] RPEL repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=26;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=24;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2495611; R2=0.0168148; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=670.63547; R2=11.41872; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=432; N_SCORE=8.5; H_SCORE=4918; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=316; N_SCORE=6.6; H_SCORE=4233; MODE=1; TEXT='RR';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='D'; M=-12, 23,-26, 28, 20,-29,-13, -2,-30,  9,-26,-21, 15,-10,  6,  3,  4, -2,-24,-33,-17, 13;
/M: SY='S'; M=  4, -7,-14, -8, -8,-12,-12,-13, -9,-10,-12,-10, -3,-16, -8, -8, 15, 12,  0,-29,-10, -8;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='E'; M= -5,  3,-24,  1, 14,-21,-17, -6,-16,  7,-15,-10,  5,-12,  7,  4,  0, -2,-16,-27,-14, 10;
/M: SY='R'; M=-14,-12,-27,-11,  2,-15,-23, -2,-13, 11, -6, -3, -7,-19,  2, 27,-12,-10, -9,-23, -8, -1;
/M: SY='K'; M=-11, -1,-30, -1,  9,-29,-20, -3,-30, 45,-29, -9,  1,-11, 10, 31,-10,-11,-21,-21, -8,  9;
/M: SY='L'; M= -9,-29,-22,-33,-24,  5,-32,-22, 30,-28, 35, 23,-26,-26,-19,-22,-25, -9, 19,-21, -1,-23;
/M: SY='A'; M= 12, -6,-17,-10, -3,-22, -3, -8,-16, -3,-18, -6, -1,-13,  6,  0, 12,  2,-11,-26,-16,  1;
/M: SY='H'; M= -9, -5,-23, -9, -6,-12,-12, 10,-10, -9, -9,  1,  1,-20,  6, -6, -4, -8,-11,-24, -5,  0;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='P'; M= -7,-14,-33, -8,  2,-28,-18,-13,-22,  2,-27,-16,-11, 46,  1,  0, -5, -7,-25,-27,-23, -2;
/M: SY='D'; M= -2,  7,-23,  9,  1,-25, -3,-13,-24, -8,-22,-18,  4,  4, -6,-13,  8,  8,-18,-31,-20, -3;
/M: SY='R'; M=-15,-13,-31,-11, -3,-21,-22, -1,-18, 14,-18, -8, -6,  2,  1, 28,-11,-10,-15,-23,-11, -5;
/M: SY='E'; M=  1,  2,-23,  5, 22,-25,-15, -6,-18,  3,-17,-10, -2, -8, 12, -3,  5, -4,-15,-28,-16, 17;
/M: SY='E'; M= -8,  9,-27, 16, 40,-30,-18, -1,-27,  6,-21,-17,  2, -4, 21, -1,  5, -2,-26,-30,-18, 31;
/M: SY='L'; M= -9,-30,-19,-30,-21,  9,-30,-21, 21,-29, 46, 19,-30,-30,-21,-20,-28, -9, 14,-21, -1,-21;
/M: SY='V'; M= -6,-20,-21,-20, -8, -6,-29,-21, 17,-13,  9,  6,-20,-21,-14,-15,-13, -6, 19,-26, -8,-12;
/M: SY='E'; M= -8, 16,-26, 14, 22,-28,-13,  1,-26, 13,-24,-16, 17,-10, 14,  8,  1, -7,-26,-30,-17, 18;
/M: SY='R'; M=-13, -5,-29, -7,  6,-26,-20, -2,-21, 28,-19,  1, -3,-14, 20, 31, -9,-10,-18,-20, -9, 12;
/M: SY='N'; M= -9,  8,-27,  2, -5,-26, 17, 18,-30, -5,-27,-14, 20,-19,  0, -4,  0,-13,-29,-28,-13, -3;
/M: SY='I'; M= -9,-30,-28,-39,-29,  1,-39,-29, 46,-29, 22, 19,-21,-21,-21,-29,-20, -9, 30,-21, -1,-29;
/M: SY='L'; M=-10,-29,-22,-32,-22,  7,-32,-21, 27,-29, 41, 23,-27,-27,-19,-22,-27,-10, 15,-20,  0,-22;
/M: SY='Q'; M=-12, -7,-31, -4, 11,-26,-21, 12,-19, -1,-16, -4, -7, 13, 17,  0, -8,-12,-25,-26,-11, 12;
/M: SY='E'; M= -2,-10,-24,-10,  6, -9,-17,-10,-13, -5,-13, -6,-10,  5, -1, -7, -2, -6,-13,-22,-12,  2;
/M: SY='B'; M= -7,  6,-20,  5,  1,-16,-15, -8,-11, -5, -8, -5,  4,-16, -4, -7,  2,  3, -8,-31,-13, -1;
/M: SY='E'; M= -5,  7,-23,  8, 10,-25,-12, -8,-23,  4,-26,-18,  8,  6,  1, -3,  9,  6,-20,-33,-19,  5;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 99 in 30 different sequences
Number of true positive hits 99 in 30 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 4
Feature key [info] REPEAT
Feature description [info] RPEL
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
30 sequences

MKL1_HUMAN  (Q969V6), MKL1_MOUSE  (Q8K4J6), MKL1_XENLA  (Q8AYC2), 
MKL2_HUMAN  (Q9ULH7), MKL2_MOUSE  (P59759), MRTFB_XENLA (Q8AYC1), 
MYCD_HUMAN  (Q8IZQ8), MYCD_MOUSE  (Q8VIM5), MYCD_PIG    (Q7YR76), 
MYCD_RAT    (Q8R5I7), PHAR1_CHICK (Q801X6), PHAR1_HUMAN (Q9C0D0), 
PHAR1_MOUSE (Q2M3X8), PHAR1_RAT   (P62024), PHAR1_XENLA (Q6GLU8), 
PHAR2_HUMAN (O75167), PHAR2_RAT   (P62025), PHAR3_HUMAN (Q96KR7), 
PHAR3_MOUSE (Q8BYK5), PHAR3_RAT   (Q6RFY2), PHAR4_BOVIN (F1MCY2), 
PHAR4_CHICK (F1N8V3), PHAR4_HUMAN (Q8IZ21), PHAR4_MOUSE (Q501J7), 
PHAR4_PONAB (Q5RAU1), PHAR4_XENTR (F7EC58), PHR4A_DANRE (F1QIC4), 
PHR4A_XENLA (Q5HZA1), PHR4B_DANRE (Q6PEI3), PHR4B_XENLA (Q5XHF3)
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PDB
[Detailed view]
10 PDB

2V51; 2V52; 2YJE; 2YJF; 4B1U; 4B1V; 4B1W; 4B1X; 4B1Y; 4B1Z

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