Entry: PS51080

Forthcoming changes to the profile format
General information about the entry

Entry name [info] CTF_NFI_2
Accession [info] PS51080
Entry type [info] MATRIX
Date [info] FEB-2005 (CREATED); OCT-2013 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00361
Associated ProRule [info] PRU00436

Name and characterization of the entry

Description [info] CTF/NF-I DNA-binding domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=194;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=189;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2063859; R2=0.0054456; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=-113618.76404; R2=73.52809; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=1340; N_SCORE=8.5; H_SCORE=92848; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=973; N_SCORE=6.5; H_SCORE=72628; MODE=1; TEXT='?';
/DEFAULT: M0=-6; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='Y'; M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='T'; M= 10,  0,-20,-10,-20,-20,-20,-20,  0,-10,  0,  0, 10,  0,  0,-30, 20, 50, 10,-50,-10,-10;
/M: SY='Q'; M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='F'; M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='H'; M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='F'; M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='I'; M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='H'; M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='F'; M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='Y'; M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='T'; M= 10,  0,-20,-10,-20,-20,-20,-20,  0,-10,  0,  0, 10,  0,  0,-30, 20, 50, 10,-50,-10,-10;
/M: SY='W'; M=-50,-50,-20,-40,-10, 10, 10,-50,-30,-20,-20,-30,-70,-30,-10,  0,-30,-50,-30,200, 50,-10;
/M: SY='F'; M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='N'; M=  0, 40,-10, 10,-10,-10,  0,-10,  0,  0,-20,  0, 80,-30,-10,-20,  0, 10,-20,-70,-40,-10;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='Q'; M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='Y'; M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='F'; M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='H'; M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='M'; M= 10,-20,-20,-30,-10,-20,-20, 20, 10, 20, 20, 60,  0,-40,-10,  0,-20,  0,  0,-30,-10,-10;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='Q'; M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='W'; M=-50,-50,-20,-40,-10, 10, 10,-50,-30,-20,-20,-30,-70,-30,-10,  0,-30,-50,-30,200, 50,-10;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='I'; M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='F'; M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='I'; M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='T'; M= 10,  0,-20,-10,-20,-20,-20,-20,  0,-10,  0,  0, 10,  0,  0,-30, 20, 50, 10,-50,-10,-10;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='N'; M=  0, 40,-10, 10,-10,-10,  0,-10,  0,  0,-20,  0, 80,-30,-10,-20,  0, 10,-20,-70,-40,-10;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='Q'; M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='M'; M= 10,-20,-20,-30,-10,-20,-20, 20, 10, 20, 20, 60,  0,-40,-10,  0,-20,  0,  0,-30,-10,-10;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='I'; M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='Q'; M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='W'; M=-50,-50,-20,-40,-10, 10, 10,-50,-30,-20,-20,-30,-70,-30,-10,  0,-30,-50,-30,200, 50,-10;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='M'; M= 10,-20,-20,-30,-10,-20,-20, 20, 10, 20, 20, 60,  0,-40,-10,  0,-20,  0,  0,-30,-10,-10;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='I'; M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='F'; M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='I'; M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='T'; M= 10,  0,-20,-10,-20,-20,-20,-20,  0,-10,  0,  0, 10,  0,  0,-30, 20, 50, 10,-50,-10,-10;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='Q'; M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='H'; M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30,  0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60,  0;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='Q'; M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/M: SY='H'; M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='H'; M=-20,-20,-50,-20,  0,-30,-30,140,-20,-20,-10, 20,-10, 10,  0,-10,-10,-20,-30,-50,  0,  0;
/M: SY='I'; M=  0,-20,-20,-40,-30,  0,-10,-20, 60,-20, 20, 10,  0,-30,-20,-30,-10,  0, 40,-30,-10,-30;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='K'; M=  0,  0,-30,  0, 20,-10,-10,-20,-20, 40,-20, 20,  0, 10,  0, 10,  0,-10,-20,-20,-10, 10;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='Y'; M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='L'; M=-10,-10,  0,-10,-10, 20,-20,-10, 20,-20, 40, 20,-20,-30,-20,-20,-20,  0, 10,-20, 30,-10;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='Y'; M=-40,-30,-60,-10,-20, 30,-30,  0,-10,-10, 30,-10,-40,-20,-10,  0,-20,-10, 10, 50, 90,-20;
/M: SY='F'; M=-20,-30,-30,-50,-40,100,-30,-30,  0,-10, 20,-20,-10,-40,-30,-10,-10,-20, 10, 10, 30,-40;
/M: SY='V'; M= 10,-20,-20,-20,-30, 10,-30,-30, 40,-20, 10,  0,-20,-40,-30,-10,-10, 10, 50,-30, 10,-30;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='R'; M=-10,-20,-20,-10,-10,-10,-20,-10,-30, 10,-20,  0,-20,-10, 30, 80,-10,-30,-10,  0,  0,  0;
/M: SY='D'; M=  0, 50,-30, 90, 10,-50,-10,-20,-40,  0,-10,-30, 10,-10,-10,-10,  0,-10,-20,-40,-10,  0;
/M: SY='A'; M= 40,  0,-30,  0,  0,-20,  0,-20,  0,  0,-10, 10,  0,-10, 10,-10, 10, 10, 10,-50,-40,  0;
/M: SY='E'; M=  0,  0, 10, 10, 60,-40,-20,  0,-30, 20,-10,-10,-10, 10, 20,-10,  0,-20,-30,-10,-20, 50;
/M: SY='Q'; M= 10,-10,-20,-10, 20,-30,-20,  0,-20,  0,-20,-10,-10,  0, 80, 30,-10,  0,-30,-10,-10, 40;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='G'; M=  0,  0,-40,-10,-20,-30, 80,-30,-10,-10,-20,-20,  0,-10,-20,-20,  0,-20,-30, 10,-30,-20;
/M: SY='S'; M= 10,  0,-20,  0,  0,-10,  0,-10,-10,  0,-20,-20,  0,-10,-10,-10, 40, 20,-10,-30,-20,-10;
/M: SY='P'; M=-10,-20,-30,-10, 10,-40,-10, 10,-30, 10,-30,-40,-30,110,  0,-10,-10,  0,-40,-30,-20,  0;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 18 in 18 different sequences
Number of true positive hits 18 in 18 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] DNA_BIND
Feature description [info] CTF/NF-I
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
18 sequences

NFIA_CHICK  (P17923), NFIA_HUMAN  (Q12857), NFIA_MOUSE  (Q02780), 
NFIA_RAT    (P09414), NFIB_BOVIN  (Q0VCL6), NFIB_CHICK  (P17924), 
NFIB_HUMAN  (O00712), NFIB_MESAU  (P13622), NFIB_MOUSE  (P97863), 
NFIC_CHICK  (P17926), NFIC_HUMAN  (P08651), NFIC_MOUSE  (P70255), 
NFIC_PIG    (P21999), NFIL_PIG    (P14057), NFIX_CHICK  (Q90932), 
NFIX_HUMAN  (Q14938), NFIX_MESAU  (P13623), NFIX_MOUSE  (P70257)
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View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission