Entry: PS51122

Forthcoming changes to the profile format
General information about the entry

Entry name [info] CALPONIN_2
Accession [info] PS51122
Entry type [info] MATRIX
Date [info] JUN-2005 (CREATED); OCT-2013 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00808
Associated ProRule [info] PRU00474

Name and characterization of the entry

Description [info] Calponin-like repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=26;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=24;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1444489; R2=0.0162099; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=530.56585; R2=10.67805; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=485; N_SCORE=9.0; H_SCORE=5047; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=300; N_SCORE=6.0; H_SCORE=3734; MODE=1; TEXT='RR';
/DEFAULT: M0=-8; D=-20; I=-20; B1=*; E1=*; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='I'; M= -8,-27,-23,-35,-27,  0,-32,-21, 37,-22, 18, 29,-22,-22,-16,-22,-18, -8, 29,-22, -2,-24;
/M: SY='G'; M= -4, -9,-26, -7, -5,-25,  9,-13,-27, -4,-28,-18, -2,  8, -5,  3,  7, -4,-22,-28,-23, -7;
/M: SY='L'; M= -5,-23,-18,-23,-15,  3,-23,-18, 11,-25, 31, 11,-21,-25,-15,-18,-14, -3,  5,-25, -5,-15;
/M: SY='Q'; M=-10,  0,-30,  0, 20,-40,-20, 10,-20, 10,-20,  0,  0,-10, 60, 10,  0,-10,-30,-20,-10, 40;
/M: SY='M'; M=  8,-13,-15,-21,-13, -9,-11, -7,  4,-10,  2, 26,-11,-15, -2,-12,  0, -1,  3,-24, -9, -8;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='W'; M=-10,-15,-25,-20,-18,  6,-23,-11, -9,-12, -9, -9,-15,-20,-12,-12, -6, 14,-10, 29, 26,-15;
/M: SY='N'; M= -4, 28,-17, 14,  0,-20,  0,  4,-20, -3,-30,-20, 45,-17,  0, -3, 19,  6,-24,-40,-20,  0;
/M: SY='K'; M=-10,  0,-30,  0, 13,-33,-20, -4,-27, 38,-27, -7,  0,-10, 25, 24, -7,-10,-23,-20,-10, 19;
/M: SY='G'; M=-10,-17,-27,-20,-23, 11, 22,-11,-21,-20,-13,-10,-10,-25,-23,-18,-10,-15,-18, -1, 10,-23;
/M: SY='A'; M= 20,  2, 15, -1, -8,-25, -9,-18,-21,-12,-17,-17, -5,-17,-12,-20,  3, -5, -9,-31,-22,-10;
/M: SY='S'; M=  4, 12,-13,  6,  0,-20,  0, -4,-20, -7,-30,-20, 25,-13,  0, -7, 31, 14,-16,-40,-20,  0;
/M: SY='Q'; M=-10,  0,-30,  0, 20,-40,-20, 10,-20, 10,-20,  0,  0,-10, 60, 10,  0,-10,-30,-20,-10, 40;
/M: SY='R'; M= -6, -2,-24, -2,  7,-27,-14, -3,-25, 18,-25,-10,  3,-12, 20, 22,  7, -1,-20,-26,-13, 12;
/M: SY='G'; M= -2,-15,-28,-15,-20,-21, 47,-20,-26,-22,-11,-11, -7,-22,-20,-20, -7,-18,-21,-20,-23,-20;
/M: SY='M'; M=-10,-14,-23,-21, -8,-12,-20,  3,  8, -4,  8, 42,-14,-17, 18, -4,-14,-10, -2,-20, -3,  5;
/I:         I=-6; MD=-32;
/M: SY='T'; M=  0,  0, -7, -7, -7, -7,-14,-14, -7, -7, -7, -7,  0, -7, -7, -7, 14, 35,  0,-21, -7, -7; D=-6;
/I:         I=-6; MI=-32; IM=-32; DM=-32;
/M: SY='N'; M=  7, 16,-20,  3, -7,-22, 16, -4,-22, -7,-25,-17, 29,-17, -7,-10,  8, -4,-22,-30,-22, -7;
/M: SY='F'; M=-20,-27,-23,-35,-27, 67,-30,-10,  0,-25,  7,  0,-20,-30,-32,-17,-20,-10, -3, 15, 43,-27;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='T'; M= -1, -9,-13,-14,-11, -6,-18,-18, -3,-16,  3, -3, -7,-16,-11,-13, 10, 26,  1,-29, -9,-11;
/M: SY='G'; M= -7,-12,-32,-10,-10,-27, 26,-15,-33, -5,-27,-17, -5,  5,-10,  3, -5,-15,-27,-22,-25,-13;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='H'; M=-15, 20,-28, 20, 10,-30,-13, 30,-27,  0,-25,-11, 21,-15, 20,  1,  0,-10,-30,-32, -7, 14;
/M: SY='I'; M= -5,-23,-18,-28,-23,  0,-31,-25, 24,-23, 18, 11,-20,-22,-20,-21,-11,  6, 23,-25, -5,-23;
/M: SY='Y'; M=-15, -6,  6,-13,-18,  7,-23,  6,-11,-12,-11, -9, -1,-30,-12,-12,-11, -8,-15, -4, 32,-18;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 89 in 38 different sequences
Number of true positive hits 89 in 38 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 7
Feature key [info] REPEAT
Feature description [info] Calponin-like
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

CLPH_ONCVO  (P37801), CNN1_BOVIN  (Q2HJ38), CNN1_CHICK  (P26932), 
CNN1_HUMAN  (P51911), CNN1_MELGA  (P37803), CNN1_MOUSE  (Q08091), 
CNN1_MUSPF  (Q9GK38), CNN1_PIG    (Q08092), CNN1_RAT    (Q08290), 
CNN1_SHEEP  (Q7YRL2), CNN2_BOVIN  (Q3SYU6), CNN2_HUMAN  (Q99439), 
CNN2_MOUSE  (Q08093), CNN2_PIG    (Q08094), CNN2_PONAB  (Q5RFN6), 
CNN3_BOVIN  (Q32L92), CNN3_HUMAN  (Q15417), CNN3_MOUSE  (Q9DAW9), 
CNN3_RAT    (P37397), MP20_DROME  (P14318), MYPH_ECHGR  (Q24799), 
TAGL2_BOVIN (Q5E9F5), TAGL2_HUMAN (P37802), TAGL2_MOUSE (Q9WVA4), 
TAGL2_RAT   (Q5XFX0), TAGL3_BOVIN (Q3ZBY2), TAGL3_HUMAN (Q9UI15), 
TAGL3_MACFA (Q4R5J4), TAGL3_MOUSE (Q9R1Q8), TAGL3_PONAB (Q5R6R2), 
TAGL3_RAT   (P37805), TAGL_BOVIN  (Q9TS87), TAGL_CHICK  (P19966), 
TAGL_HUMAN  (Q01995), TAGL_MOUSE  (P37804), TAGL_RAT    (P31232), 
UNC87_CAEEL (P37806), YSE2_CAEEL  (Q09936)
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