Entry: PS51128

Forthcoming changes to the profile format
General information about the entry

Entry name [info] ZF_DKSA_2
Accession [info] PS51128
Entry type [info] MATRIX
Date [info] JUN-2005 (CREATED); OCT-2013 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00846
Associated ProRule [info] PRU00510

Name and characterization of the entry

Description [info] Prokaryotic dksA C4-type zinc finger profiles.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=81;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=76;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3809193; R2=0.0087029; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=5666.57895; R2=23.68421; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=819; N_SCORE=9.2; H_SCORE=23690; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=589; N_SCORE=6.5; H_SCORE=19593; MODE=1; TEXT='?';
/DEFAULT: M0=-23; D=-50; I=-50; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-105; BD=-105;
/M: SY='D'; M=  -7, -28,  53,  21, -30, -14,  44, -31,   0, -25, -18,  11, -14,  16,  -5,  -2,  -8, -28, -42,  -8;
/M: SY='P'; M=  -7,  19,  -9,  10,  -9, -22, -14,   8, -10,   2,   2,  -6,  43,  -7, -17, -11,  -7,   4,  18,  -3;
/M: SY='G'; M=  15, -18,  -5,  10, -15,  22, -12,  -4,  -8,  -5,  -6,   0, -15,  -4, -14,   7,   0,  -3, -22,  -7;
/M: SY='D'; M= -11, -27,  60,  27, -33, -13,  -2, -30,   0, -28, -25,  13, -12,  10,  -7,   3,   1, -26, -42, -18;
/M: SY='R'; M=  -4, -20,  -9,  -3,   5,  -2,   5,   0,  -1,   4,   3,   9, -19,  10,  11,   3,   2,  -2, -22,  -4;
/M: SY='A'; M=  38, -13, -14, -10, -25,  22, -17, -17, -11, -19, -12,  -7,   7,  -8, -17,  11,   2,  -5, -24, -20;
/M: SY='S'; M=   9, -16,  -7,   2, -12, -11,  -8,   0,  -5,  -1,  -3,   3, -14,  13,  -9,  17,  15,   1, -24,  -3;
/M: SY='E'; M=   4, -21,  14,  19, -13, -16,  -6,  -4,   4,   0,   6,  -5, -15,   7,  10,   2,  -4,  -4, -23,  -3;
/M: SY='E'; M=   2, -20,  10,  23,   7, -21, -11,   7,  -6,   5,  -1,  -9, -14,  -2, -12,  -5,   3,   6, -21,  -1;
/M: SY='D'; M=  -6, -22,  21,  19,   9, -20,  -5,   0,  -4,   2,  -4,   1, -17,  -2,  -5,  -4,   0,   0, -17,  12;
/M: SY='E'; M=  -2, -23,  31,  33, -12, -15,  -2, -18,   2,  -8, -12,  15, -12,  12,  -5,  -2,  -2, -16, -29, -14;
/M: SY='R'; M=  -8, -24,   9,   5,  -3, -23,  -7,  -1,   7,  10,   5,  -7, -21,   7,  32,  -9,  -6,  -2, -24,  -7;
/M: SY='E'; M=  11, -21,  20,  22, -21, -10,  -4, -18,   7, -17,  -7,   0, -13,  20,   3,   9,  -2, -12, -24,  -4;
/M: SY='W'; M= -10, -21, -15,  -2,   2, -14, -12,   5,   7,  17,   6, -11, -20,  10,  11,  -8,   3,   4,  21,  -4;
/M: SY='D'; M=  -3, -20,  22,   4,  -5,   9,  -7,  -7,  -1,   4,  -5,  16, -18,   0,  -9,   4,   0,  -9, -27, -11;
/M: SY='H'; M=   0, -20,  -7,  -2,   1, -20,  20,   7, -10,  20,  12, -10, -21,  14, -10,  -3,  -6,   5, -23,  -2;
/M: SY='S'; M=  10, -16,  -5,   3, -18,  -2,  -8, -11,   7,  -7,  -7,   7, -15,   5,  13,  15,  11,  -5, -27, -14;
/M: SY='L'; M=  -1, -17, -22, -15,   9, -24, -13,  16, -15,  29,  20, -12, -24,   2, -16, -11,  -1,  14, -21,  -3;
/M: SY='R'; M=  -6, -24,  16,  -1, -13, -19,  16,   9,   4,   1,   4,   1, -19,   7,  20,  -3,  -6,   2, -28,  -7;
/M: SY='D'; M= -10, -26,  33,  28, -20,  -7,  25, -26,  13, -18, -15,  12, -12,  11,   2,  -1,  -6, -23, -27,   1;
/M: SY='H'; M=  -9, -26, -12,  -7,  -9, -21,  36,  -3,   8,  -3,   3,   0,   3,   1,  35,  -5,  -8,  -4, -22,   9;
/M: SY='E'; M=  -7, -25,  20,  25, -16, -21,  -5,  -2,  11,   1,   5,   1, -14,  12,  10,  -7,  -7,  -6, -27, -12;
/M: SY='R'; M=  -9, -24,  -4,  11,  -3, -18,  -3, -14,  20,  -9,  -8,   6, -18,  14,  37,   4,  -5, -14, -22,  -7;
/M: SY='R'; M=   0,  17,  22,  17, -27,  -7,   9, -21,  14, -21, -13,   1, -16,  19,  25,  -3,  -8, -18, -29, -14;
/M: SY='R'; M=  -9, -22,  -4,  19, -10, -23,   6,  -5,   7,  14,   2,  -8, -17,   8,  21,  -3,   0,  -7, -25,  -9;
/M: SY='L'; M= -83, -89, -92, -90, -64, -99,  35,  48, -20,  74, -52,  16, -96, -84, -87, -87, -17, -56, -92, -72;
/M: SY='Q'; M=  -6, -92, -75,   7, -88, -24,  15,  14,   5, -37,  43,  33,  17,  47,  37,   3, -10, -77, -96, -81;
/M: SY='K'; M= -33, -97,  45,  50, -94, -88,  18, -92,  53,  -8, -81, -69,  18,  39,  25, -75, -77, -90, -97, -83;
/M: SY='I'; M=  -8, -89, -98, -94, -67, -97, -93,  81, -92,  15,  19, -91, -92, -88, -94,   2, -73,  43, -91,  -3;
/M: SY='E'; M=  18, -92,  66,  68, -93, -21, -74, -90, -15,  -2, -83,  17, -82, -65, -14, -71, -22, -86,-101, -87;
/M: SY='H'; M=  36, -89,  -6,  30, -87, -81,  42, -86,  21, -20,  11,  24, -84,  -9,  23,   7,   9, -81, -95,  -3;
/I:         I=-8; MD=-17;
/M: SY='A'; M=  94, -83, -86, -78, -97, -71, -88, -86, -81, -88, -82, -80, -86,  20, -85, -15, -16, -74, -96, -91; D=-8;
/I:         I=-8; MI=-17; MD=-17; IM=-17; DM=-17;
/M: SY='L'; M= -88, -91,-104, -96,  11,-106, -88,  22, -92,  79,  20,-100,-102, -89,   4, -96, -83, -60, -90, -71; D=-8;
/I:         I=-8; DM=-17;
/M: SY='Q'; M=  -6,  36,  16,  42, -98, -23, -78, -28,   5, -39, -84, -73, -87,  61,  27,  24, -77, -88, -99, -87; D=-8;
/I:         I=-8; DM=-17;
/M: SY='R'; M= -28,  38, -82, -70, -96, -94, -77, -20,  64, -92, -83, -75, -91,  19,  86, -79, -82, -90, -96, -85; D=-8;
/I:         I=-8; DM=-17;
/M: SY='I'; M= -85, -93,-106,-100,  15,-107, -95,  73, -97,  42,  59, -98, -98, -93, -97, -94, -80,  16, -91, -72; D=-8;
/I:         I=-8; DM=-17;
/M: SY='E'; M=  24, -97,  50,  87,-103, -87, -76,-101,   6, -97, -92,  -4, -81, -62, -73, -74, -78, -93,-103, -92; D=-8;
/I:         I=-8; DM=-17;
/M: SY='D'; M= -26, -95,  60,  20, -92,  10,  19, -88, -21,  12,  18,  51, -90,   1, -14, -76, -79, -89,-105, -85; D=-8;
/I:         I=-8; DM=-17;
/M: SY='G'; M= -72, -98, -81,   3, -97,  93, -86,-108,   0,-103, -93, -72, -88, -81, -16, -72, -87,-102, -91,   1; D=-8;
/I:         I=-8; DM=-17;
/M: SY='T'; M= -73, -88,  41,   3, -90, -21, -83, -80, -77, -19, -82, -69, -85, -76, -21,  51,  68,   5,-106, -87; D=-8;
/I:         I=-8; DM=-17;
/M: SY='Y'; M= -93, -99, -95, -95,  71,-100, -65, -76, -85, -71, -71, -93,-104, -86,   5, -88, -87, -81, -53, 118; D=-8;
/I:         I=-8; DM=-17;
/M: SY='G'; M= -70, -97, -84, -93,-103, 101, -91,-110,  -1,-106, -95, -70, -88, -85, -91, -70, -88,-104, -94, -97; D=-8;
/I:         I=-8; DM=-17;
/M: SY='Y'; M= -83,  15, -20, -13,  18, -99,  38,  53, -82, -13, -64, -86, -95, -82,   5, -85, -79,  28,  39,  74;
/M: SY='C'; M= -79, 157, -99, -99, -89, -94, -99, -96, -94, -86, -87, -85,-109,-102,-101, -81, -79, -83,-119,-100;
/M: SY='E'; M= -26,  41,  31,  94, -97, -89, -74, -32, -64, -89, -86, -72, -79,   6, -16,  -2, -75, -20,-100, -89;
/M: SY='E'; M= -78,  38,  66,  77, -97, -25, -75, -91,   7, -91, -88, -68, -81, -63,  10, -22, -76,   1,-103, -88;
/M: SY='C'; M= -74, 133, -87, -88, -88, -89, -92, -87, -85, -85, -83, -75, -93, -90, -92,   6,  76, -77,-112, -92;
/M: SY='G'; M= -68, -95, -76,  29,-101, 101, -86,-108, -82,-102, -93, -68, -84, -79, -90, -68, -85,-101, -92, -95;
/M: SY='E'; M=   7, -93,  14,  74,  -6, -86, -73, -90,  34, -89, -83,  15, -80,  38, -10, -70,   4, -30, -95, -83;
/M: SY='P'; M=  13,-100,  -7,  78,-101, -86, -78, -95, -67, -96, -88, -79,  90, -65,   6, -75, -77, -92, -97, -93;
/M: SY='I'; M= -83, -96,-104,-102, -66,-108,-104, 113, -97, -49, -53, -94, -91, -93,-100, -91, -76, -36, -91, -74;
/M: SY='P'; M= -26,-100,  28,  19,-102,  56, -83, -98, -78,-101, -90, -75,  94, -77, -88, -14, -77, -96, -97, -96;
/M: SY='Y'; M= -11, -92, -83,  43,  -6, -97, -81,  42, -83,  42, -61, -90,  21, -78, -86, -84, -78,   3, -81,  53;
/M: SY='E'; M=  33, -94, -63,  79, -98, -29, -74, -96,  10, -93, -85, -12,  17,  -1,  44, -71, -77, -89, -95, -88;
/M: SY='R'; M= -84,-101, -80, -68, -94, -94, -70,-100,   6, -93, -82, -73, -92, -57, 118, -78, -83, -94, -93, -80;
/M: SY='L'; M= -84, -88, -98, -88, -61,-102, -83, -53, -86,  90, -49, -96,-100,  19,   8, -91, -81, -60, -89, -72;
/M: SY='E'; M= -13,  11, -71,  61, -84, -91, -76, -79,  54,  30,  32, -77, -84,  22,  16, -77, -78, -79, -93, -81;
/M: SY='A'; M=  86, -82, -88, -79,  -5, -75, -87, -18, -82, -10, -71, -83, -87,  17, -85, -65, -71,  23, -92, -81;
/M: SY='V'; M= -78, -90,   5, -83,  -7, -93, -82,  37, -76,  21,  10,  17, -94, -79,  43,   5, -73,  45, -92,   3;
/M: SY='P'; M= -84,-109, -84, -73,-103, -86, -86, -92, -76,-101, -87, -89, 128, -82,   8, -81, -77, -96, -97, -99;
/M: SY='W'; M=   1, -19, -13,  -9,  13,   9, -10,  -3, -12,  -4,  -5,  -7, -17, -11, -16,   4,  18,  -2,  45,  24;
/M: SY='A'; M=  32,  27, -11,  -1, -20,  -5, -17,  -9,  -9, -13,  -9,  -6, -14,  -7, -15,  11,  16,   3, -28, -18;
/I:         I=-10; MD=-22;
/M: SY='R'; M= -14, -28,  -4,   5, -20, -27,  -9, -14,  16,  -6,  -8,  -8, -22,   9,  38,  -9,  -1,  -9, -29, -14; D=-10;
/I:         I=-10; MI=-22; MD=-22; IM=-22; DM=-22;
/M: SY='Y'; M=  -7, -23,  -9, -14,   2, -23,   9,  -6,  -7,   6,   6,  -4, -24,  -9,   7,  -7,   7,  -7, -13,  25; D=-10;
/I:         I=-10; DM=-22;
/M: SY='C'; M=  -2, 104, -25, -25, -22, -21, -27, -22, -22, -19, -18, -13, -33, -25, -28,   2,   0, -11, -46, -28; D=-10;
/I:         I=-10; DM=-22;
/M: SY='I'; M=   6, -19, -22, -21,  -7, -22, -25,  29, -19,   6,   5,  -6,  -8, -18, -23,  -3,   4,  27, -30, -12; D=-10;
/I:         I=-10; DM=-22;
/M: SY='E'; M=  -8,  18,  19,  35, -15, -18,  -6, -28,   8, -24, -20,   7,   2,   7,   3,   3,  -1, -22, -30, -17; D=-10;
/I:         I=-10; DM=-22;
/M: SY='C'; M=   5, 100, -18,  -4,  -6,  -9, -22, -24, -17, -17, -17, -13, -29, -18, -24,  -4,  -8, -14, -35, -21; D=-10;
/I:         I=-10; DM=-22;
/M: SY='Q'; M=   5, -25,  -5,  14, -26, -13,  -1, -16,  14,  -9,   1,  -1, -14,  45,  11,   5,  -3, -15, -22, -10;
/M: SY='E'; M=   0, -24,   4,  27, -20, -16,  -1, -23,  12, -20, -12,   4, -12,  22,  26,   5,   4, -18, -22,   0;
/M: SY='R'; M=  -3, -24,  21,  12, -19, -18,  13,  -7,  12,  -7,  -7,  -1,  -1,   2,  23,  -2,  -5,  -3, -30, -11;
/M: SY='H'; M=   4, -21, -16,  -5,   3, -20,  20,  10,  -3,  11,   5, -11, -21,   5,   8,  -5,  -6,   9, -19,   8;
/M: SY='E'; M=  -7, -28,  18,  53, -31, -20,   0, -31,  10, -24, -19,   3,  -5,  26,   2,   1,  -6, -24, -28, -19;
/M: SY='R'; M=  -3,   8,   5,   4,   1,  -9,  12,   1,  10,  -3,  -3,  -4, -18,   3,  14,  -3,  -4,  -4, -20,   2;
/M: SY='R'; M=  -5, -25,   8,  19, -14, -20,   9,  -2,   8,  -4,   0,  -5,   1,   8,  20,  -1,  -6,  -5, -24,  -2;
/M: SY='P'; M=  -8, -25,   6,  17, -11,  -6,  15, -18,   9, -11,  -3,  11,  21,  17,   5,   2,  -2, -18, -26, -10;
/M: SY='K'; M=   0, -24,   0,   5, -20,  -8,  17, -11,  21, -10,  -2,   3,  12,  11,  19,  -2,  -6, -10, -26, -11;
/M: SY='H'; M=  -3, -22,   1,   8, -19,  -8,  30,  -9,   3,  -6,  -4,  -1, -16,  24,  13,   2,   8,  -4, -29,  -7;
/M: SY='Y'; M=  -6, -24,   5,  11,   7, -12,   9, -10,   0,  -4,   0,  -6, -18,  13,   9,  -2,   0,  -8,  -7,  29;
/M: SY='R'; M=   2, -22, -12,  -2, -16,  10, -11,  -6,   8,  -1,   0,  -3,  14,   2,  20,  -4,  -3,  -2, -25, -14;
/M: SY='R'; M=  -8, -25,  19,   1, -22,  -1,  -7,  -5,   8, -14,  -9,   5,   7,  12,  26,  -2,  -2,  -1, -30, -14;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 22 in 22 different sequences
Number of true positive hits 22 in 22 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Feature key [info] ZN_FING
Feature description [info] DksA C4-type
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
22 sequences

CP80_BP186  (P41059), DKSA_BUCAI  (P57294), DKSA_BUCAP  (Q8K9U5), 
DKSA_BUCBP  (Q89AR3), DKSA_CAUCN  (B8H0C0), DKSA_CAUCR  (P0CAU3), 
DKSA_ECO57  (P0ABS3), DKSA_ECOL6  (P0ABS2), DKSA_ECOLI  (P0ABS1), 
DKSA_HAEIN  (P43758), DKSA_SALTI  (P0A1G6), DKSA_SALTY  (P0A1G5), 
DKSA_SHIFL  (P0ABS4), G16O_BACSU  (P80872), TRAR_ECOLI  (P41065), 
WOR3_CANAL  (Q5A6T8), Y1497_HAEIN (P44221), Y250_AQUAE  (O66611), 
YBII_ECOLI  (P41039), YLYA_BACSU  (Q45478), YO82_BPP2   (Q06424), 
YTEA_BACSU  (P42408)
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PDB
[Detailed view]
2 PDB

1TJL; 2KGO

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Direct ScanProsite submission