PROSITE entry PS51128
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General information about the entry
| Entry name [info] | ZF_DKSA_2 |
| Accession [info] | PS51128 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2005 CREATED;
10-MAY-2017 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00846 |
| Associated ProRule [info] | PRU00510 |
Name and characterization of the entry
| Description [info] | Prokaryotic dksA C4-type zinc finger profiles. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=81; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=76; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3809193; R2=0.0087029; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=9964.6015625; R2=4.6628351; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=899; H_SCORE=14156; N_SCORE=9.2; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=589; H_SCORE=12711; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-23; D=-50; I=-50; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-105; BD=-105; /M: SY='D'; M= -7, -28, 53, 21, -30, -14, 44, -31, 0, -25, -18, 11, -14, 16, -5, -2, -8, -28, -42, -8; /M: SY='P'; M= -7, 19, -9, 10, -9, -22, -14, 8, -10, 2, 2, -6, 43, -7, -17, -11, -7, 4, 18, -3; /M: SY='G'; M= 15, -18, -5, 10, -15, 22, -12, -4, -8, -5, -6, 0, -15, -4, -14, 7, 0, -3, -22, -7; /M: SY='D'; M= -11, -27, 60, 27, -33, -13, -2, -30, 0, -28, -25, 13, -12, 10, -7, 3, 1, -26, -42, -18; /M: SY='R'; M= -4, -20, -9, -3, 5, -2, 5, 0, -1, 4, 3, 9, -19, 10, 11, 3, 2, -2, -22, -4; /M: SY='A'; M= 38, -13, -14, -10, -25, 22, -17, -17, -11, -19, -12, -7, 7, -8, -17, 11, 2, -5, -24, -20; /M: SY='S'; M= 9, -16, -7, 2, -12, -11, -8, 0, -5, -1, -3, 3, -14, 13, -9, 17, 15, 1, -24, -3; /M: SY='E'; M= 4, -21, 14, 19, -13, -16, -6, -4, 4, 0, 6, -5, -15, 7, 10, 2, -4, -4, -23, -3; /M: SY='E'; M= 2, -20, 10, 23, 7, -21, -11, 7, -6, 5, -1, -9, -14, -2, -12, -5, 3, 6, -21, -1; /M: SY='D'; M= -6, -22, 21, 19, 9, -20, -5, 0, -4, 2, -4, 1, -17, -2, -5, -4, 0, 0, -17, 12; /M: SY='E'; M= -2, -23, 31, 33, -12, -15, -2, -18, 2, -8, -12, 15, -12, 12, -5, -2, -2, -16, -29, -14; /M: SY='R'; M= -8, -24, 9, 5, -3, -23, -7, -1, 7, 10, 5, -7, -21, 7, 32, -9, -6, -2, -24, -7; /M: SY='E'; M= 11, -21, 20, 22, -21, -10, -4, -18, 7, -17, -7, 0, -13, 20, 3, 9, -2, -12, -24, -4; /M: SY='W'; M= -10, -21, -15, -2, 2, -14, -12, 5, 7, 17, 6, -11, -20, 10, 11, -8, 3, 4, 21, -4; /M: SY='D'; M= -3, -20, 22, 4, -5, 9, -7, -7, -1, 4, -5, 16, -18, 0, -9, 4, 0, -9, -27, -11; /M: SY='H'; M= 0, -20, -7, -2, 1, -20, 20, 7, -10, 20, 12, -10, -21, 14, -10, -3, -6, 5, -23, -2; /M: SY='S'; M= 10, -16, -5, 3, -18, -2, -8, -11, 7, -7, -7, 7, -15, 5, 13, 15, 11, -5, -27, -14; /M: SY='L'; M= -1, -17, -22, -15, 9, -24, -13, 16, -15, 29, 20, -12, -24, 2, -16, -11, -1, 14, -21, -3; /M: SY='R'; M= -6, -24, 16, -1, -13, -19, 16, 9, 4, 1, 4, 1, -19, 7, 20, -3, -6, 2, -28, -7; /M: SY='D'; M= -10, -26, 33, 28, -20, -7, 25, -26, 13, -18, -15, 12, -12, 11, 2, -1, -6, -23, -27, 1; /M: SY='H'; M= -9, -26, -12, -7, -9, -21, 36, -3, 8, -3, 3, 0, 3, 1, 35, -5, -8, -4, -22, 9; /M: SY='E'; M= -7, -25, 20, 25, -16, -21, -5, -2, 11, 1, 5, 1, -14, 12, 10, -7, -7, -6, -27, -12; /M: SY='R'; M= -9, -24, -4, 11, -3, -18, -3, -14, 20, -9, -8, 6, -18, 14, 37, 4, -5, -14, -22, -7; /M: SY='R'; M= 0, 17, 22, 17, -27, -7, 9, -21, 14, -21, -13, 1, -16, 19, 25, -3, -8, -18, -29, -14; /M: SY='R'; M= -9, -22, -4, 19, -10, -23, 6, -5, 7, 14, 2, -8, -17, 8, 21, -3, 0, -7, -25, -9; /M: SY='L'; M= -83, -89, -92, -90, -64, -99, 35, 48, -20, 74, -52, 16, -96, -84, -87, -87, -17, -56, -92, -72; /M: SY='Q'; M= -6, -92, -75, 7, -88, -24, 15, 14, 5, -37, 43, 33, 17, 47, 37, 3, -10, -77, -96, -81; /M: SY='K'; M= -33, -97, 45, 50, -94, -88, 18, -92, 53, -8, -81, -69, 18, 39, 25, -75, -77, -90, -97, -83; /M: SY='I'; M= -8, -89, -98, -94, -67, -97, -93, 81, -92, 15, 19, -91, -92, -88, -94, 2, -73, 43, -91, -3; /M: SY='E'; M= 18, -92, 66, 68, -93, -21, -74, -90, -15, -2, -83, 17, -82, -65, -14, -71, -22, -86,-101, -87; /M: SY='H'; M= 36, -89, -6, 30, -87, -81, 42, -86, 21, -20, 11, 24, -84, -9, 23, 7, 9, -81, -95, -3; /I: I=-8; MD=-17; /M: SY='A'; M= 94, -83, -86, -78, -97, -71, -88, -86, -81, -88, -82, -80, -86, 20, -85, -15, -16, -74, -96, -91; D=-8; /I: I=-8; MI=-17; MD=-17; IM=-17; DM=-17; /M: SY='L'; M= -88, -91,-104, -96, 11,-106, -88, 22, -92, 79, 20,-100,-102, -89, 4, -96, -83, -60, -90, -71; D=-8; /I: I=-8; DM=-17; /M: SY='Q'; M= -6, 36, 16, 42, -98, -23, -78, -28, 5, -39, -84, -73, -87, 61, 27, 24, -77, -88, -99, -87; D=-8; /I: I=-8; DM=-17; /M: SY='R'; M= -28, 38, -82, -70, -96, -94, -77, -20, 64, -92, -83, -75, -91, 19, 86, -79, -82, -90, -96, -85; D=-8; /I: I=-8; DM=-17; /M: SY='I'; M= -85, -93,-106,-100, 15,-107, -95, 73, -97, 42, 59, -98, -98, -93, -97, -94, -80, 16, -91, -72; D=-8; /I: I=-8; DM=-17; /M: SY='E'; M= 24, -97, 50, 87,-103, -87, -76,-101, 6, -97, -92, -4, -81, -62, -73, -74, -78, -93,-103, -92; D=-8; /I: I=-8; DM=-17; /M: SY='D'; M= -26, -95, 60, 20, -92, 10, 19, -88, -21, 12, 18, 51, -90, 1, -14, -76, -79, -89,-105, -85; D=-8; /I: I=-8; DM=-17; /M: SY='G'; M= -72, -98, -81, 3, -97, 93, -86,-108, 0,-103, -93, -72, -88, -81, -16, -72, -87,-102, -91, 1; D=-8; /I: I=-8; DM=-17; /M: SY='T'; M= -73, -88, 41, 3, -90, -21, -83, -80, -77, -19, -82, -69, -85, -76, -21, 51, 68, 5,-106, -87; D=-8; /I: I=-8; DM=-17; /M: SY='Y'; M= -93, -99, -95, -95, 71,-100, -65, -76, -85, -71, -71, -93,-104, -86, 5, -88, -87, -81, -53, 118; D=-8; /I: I=-8; DM=-17; /M: SY='G'; M= -70, -97, -84, -93,-103, 101, -91,-110, -1,-106, -95, -70, -88, -85, -91, -70, -88,-104, -94, -97; D=-8; /I: I=-8; DM=-17; /M: SY='Y'; M= -83, 15, -20, -13, 18, -99, 38, 53, -82, -13, -64, -86, -95, -82, 5, -85, -79, 28, 39, 74; /M: SY='C'; M= -79, 157, -99, -99, -89, -94, -99, -96, -94, -86, -87, -85,-109,-102,-101, -81, -79, -83,-119,-100; /M: SY='E'; M= -26, 41, 31, 94, -97, -89, -74, -32, -64, -89, -86, -72, -79, 6, -16, -2, -75, -20,-100, -89; /M: SY='E'; M= -78, 38, 66, 77, -97, -25, -75, -91, 7, -91, -88, -68, -81, -63, 10, -22, -76, 1,-103, -88; /M: SY='C'; M= -74, 133, -87, -88, -88, -89, -92, -87, -85, -85, -83, -75, -93, -90, -92, 6, 76, -77,-112, -92; /M: SY='G'; M= -68, -95, -76, 29,-101, 101, -86,-108, -82,-102, -93, -68, -84, -79, -90, -68, -85,-101, -92, -95; /M: SY='E'; M= 7, -93, 14, 74, -6, -86, -73, -90, 34, -89, -83, 15, -80, 38, -10, -70, 4, -30, -95, -83; /M: SY='P'; M= 13,-100, -7, 78,-101, -86, -78, -95, -67, -96, -88, -79, 90, -65, 6, -75, -77, -92, -97, -93; /M: SY='I'; M= -83, -96,-104,-102, -66,-108,-104, 113, -97, -49, -53, -94, -91, -93,-100, -91, -76, -36, -91, -74; /M: SY='P'; M= -26,-100, 28, 19,-102, 56, -83, -98, -78,-101, -90, -75, 94, -77, -88, -14, -77, -96, -97, -96; /M: SY='Y'; M= -11, -92, -83, 43, -6, -97, -81, 42, -83, 42, -61, -90, 21, -78, -86, -84, -78, 3, -81, 53; /M: SY='E'; M= 33, -94, -63, 79, -98, -29, -74, -96, 10, -93, -85, -12, 17, -1, 44, -71, -77, -89, -95, -88; /M: SY='R'; M= -84,-101, -80, -68, -94, -94, -70,-100, 6, -93, -82, -73, -92, -57, 118, -78, -83, -94, -93, -80; /M: SY='L'; M= -84, -88, -98, -88, -61,-102, -83, -53, -86, 90, -49, -96,-100, 19, 8, -91, -81, -60, -89, -72; /M: SY='E'; M= -13, 11, -71, 61, -84, -91, -76, -79, 54, 30, 32, -77, -84, 22, 16, -77, -78, -79, -93, -81; /M: SY='A'; M= 86, -82, -88, -79, -5, -75, -87, -18, -82, -10, -71, -83, -87, 17, -85, -65, -71, 23, -92, -81; /M: SY='V'; M= -78, -90, 5, -83, -7, -93, -82, 37, -76, 21, 10, 17, -94, -79, 43, 5, -73, 45, -92, 3; /M: SY='P'; M= -84,-109, -84, -73,-103, -86, -86, -92, -76,-101, -87, -89, 128, -82, 8, -81, -77, -96, -97, -99; /M: SY='W'; M= 1, -19, -13, -9, 13, 9, -10, -3, -12, -4, -5, -7, -17, -11, -16, 4, 18, -2, 45, 24; /M: SY='A'; M= 32, 27, -11, -1, -20, -5, -17, -9, -9, -13, -9, -6, -14, -7, -15, 11, 16, 3, -28, -18; /I: I=-10; MD=-22; /M: SY='R'; M= -14, -28, -4, 5, -20, -27, -9, -14, 16, -6, -8, -8, -22, 9, 38, -9, -1, -9, -29, -14; D=-10; /I: I=-10; MI=-22; MD=-22; IM=-22; DM=-22; /M: SY='Y'; M= -7, -23, -9, -14, 2, -23, 9, -6, -7, 6, 6, -4, -24, -9, 7, -7, 7, -7, -13, 25; D=-10; /I: I=-10; DM=-22; /M: SY='C'; M= -2, 104, -25, -25, -22, -21, -27, -22, -22, -19, -18, -13, -33, -25, -28, 2, 0, -11, -46, -28; D=-10; /I: I=-10; DM=-22; /M: SY='I'; M= 6, -19, -22, -21, -7, -22, -25, 29, -19, 6, 5, -6, -8, -18, -23, -3, 4, 27, -30, -12; D=-10; /I: I=-10; DM=-22; /M: SY='E'; M= -8, 18, 19, 35, -15, -18, -6, -28, 8, -24, -20, 7, 2, 7, 3, 3, -1, -22, -30, -17; D=-10; /I: I=-10; DM=-22; /M: SY='C'; M= 5, 100, -18, -4, -6, -9, -22, -24, -17, -17, -17, -13, -29, -18, -24, -4, -8, -14, -35, -21; D=-10; /I: I=-10; DM=-22; /M: SY='Q'; M= 5, -25, -5, 14, -26, -13, -1, -16, 14, -9, 1, -1, -14, 45, 11, 5, -3, -15, -22, -10; /M: SY='E'; M= 0, -24, 4, 27, -20, -16, -1, -23, 12, -20, -12, 4, -12, 22, 26, 5, 4, -18, -22, 0; /M: SY='R'; M= -3, -24, 21, 12, -19, -18, 13, -7, 12, -7, -7, -1, -1, 2, 23, -2, -5, -3, -30, -11; /M: SY='H'; M= 4, -21, -16, -5, 3, -20, 20, 10, -3, 11, 5, -11, -21, 5, 8, -5, -6, 9, -19, 8; /M: SY='E'; M= -7, -28, 18, 53, -31, -20, 0, -31, 10, -24, -19, 3, -5, 26, 2, 1, -6, -24, -28, -19; /M: SY='R'; M= -3, 8, 5, 4, 1, -9, 12, 1, 10, -3, -3, -4, -18, 3, 14, -3, -4, -4, -20, 2; /M: SY='R'; M= -5, -25, 8, 19, -14, -20, 9, -2, 8, -4, 0, -5, 1, 8, 20, -1, -6, -5, -24, -2; /M: SY='P'; M= -8, -25, 6, 17, -11, -6, 15, -18, 9, -11, -3, 11, 21, 17, 5, 2, -2, -18, -26, -10; /M: SY='K'; M= 0, -24, 0, 5, -20, -8, 17, -11, 21, -10, -2, 3, 12, 11, 19, -2, -6, -10, -26, -11; /M: SY='H'; M= -3, -22, 1, 8, -19, -8, 30, -9, 3, -6, -4, -1, -16, 24, 13, 2, 8, -4, -29, -7; /M: SY='Y'; M= -6, -24, 5, 11, 7, -12, 9, -10, 0, -4, 0, -6, -18, 13, 9, -2, 0, -8, -7, 29; /M: SY='R'; M= 2, -22, -12, -2, -16, 10, -11, -6, 8, -1, 0, -3, 14, 2, 20, -4, -3, -2, -25, -14; /M: SY='R'; M= -8, -25, 19, 1, -22, -1, -7, -5, 8, -14, -9, 5, 7, 12, 26, -2, -2, -1, -30, -14; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 22 in 22 different sequences |
| Number of true positive hits | 22 in 22 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | N_Hulo |
| Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | ZN_FING |
| Feature description [info] | DksA C4-type |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
22 sequences
CP80_BP186 (P41059), DKSA_BUCAI (P57294), DKSA_BUCAP (Q8K9U5), DKSA_BUCBP (Q89AR3), DKSA_CAUVC (P0CAU3), DKSA_CAUVN (B8H0C0), DKSA_ECO57 (P0ABS3), DKSA_ECOL6 (P0ABS2), DKSA_ECOLI (P0ABS1), DKSA_HAEIN (P43758), DKSA_SALTI (P0A1G6), DKSA_SALTY (P0A1G5), DKSA_SHIFL (P0ABS4), G16O_BACSU (P80872), TRAR_ECOLI (P41065), WOR3_CANAL (Q5A6T8), Y1497_HAEIN (P44221), Y250_AQUAE (O66611), YBII_ECOLI (P41039), YLYA_BACSU (Q45478), YO82_BPP2 (Q06424), YTEA_BACSU (P42408)» more
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| PDB [Detailed view] |
16 PDB
1TJL; 2KGO; 5VSW; 5W1S; 5W1T; 6N57; 6N58; 6PSQ; 6PSR; 6PSS; 6PST; 6PSU; 6PSV; 6PSW; 7KHE; 7KHI » more |