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Entry: PS51152

General information about the entry

Entry name [info] NFYA_HAP2_2
Accession [info] PS51152
Entry type [info] MATRIX
Date [info] 01-OCT-2005 CREATED; 10-MAY-2017 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00578

Name and characterization of the entry

Description [info] NF-YA/HAP2 family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=61;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=56;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6634736; R2=0.0076225; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=8450.0039062; R2=2.7763698; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=766; H_SCORE=10577; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=504; H_SCORE=9849; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-27; D=-80; I=-80; B1=-500; E1=-500; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='E'; M= 22,-53,-28, 60,-52,-24, 44,-38,-33,-44,-40,-10, 46,-28,-39,-33,-35, 24,-60,-45;
/M: SY='E'; M=-40,-56, 29, 59, 24,-51,-34,-42, 20,-42,-40,-33,-43, 45,-29,-35,-14,  6,-48, 10;
/M: SY='E'; M=-12,-54, -3, 63,-60,-44,-32,-57, 41,-53,-45,-28,-39, 55,-22, 30,-32,-51,-55,-46;
/M: SY='P'; M=-42,-65,-44,-36,-47,-10,-42,-49,-41,-56,-45,-47,109,-43,-51,-38,  9,-52,-47, 35;
/M: SY='I'; M=-41,-50,-63,-58, -4,-65,-55, 68,-55, 42, 28,-56,-56,-51,-56,-51,-37, 32,-51,-32;
/M: SY='Y'; M=-48,-55,-54,-53, 51,-57,-23,-27,-47,  8, 42,-52,-60,-43,-44,-47,-43,-33,-13,105;
/M: SY='V'; M=-30,-44,-61,-55,-32,-62,-63,  3,-53,-17,-20,-56,-57,-55,-54,-44,-28, 93,-66,-40;
/M: SY='N'; M=-40,-45,-13,-35,-55,-28,-20,-54,-26,-62,-48,115,-51,-28,-34,-22,-24,-56,-74,-50;
/M: SY='A'; M= 69,-46, 25,-32,-57,-32,-44,-47,-39,-50,-43,-36, 54,-37,-46,  9,-30,-38,-57,-51;
/M: SY='K'; M=-41,-56,-34,-20,-56,-49,-35,-58, 93,-55,-43,-27,-42,-17, 41,-35,-36,-53,-51,-43;
/M: SY='Q'; M=-37,-63,-32,-12,-67,-45,-25,-53,-17,-49,-35,-28,-44,120,-18,-26,-40,-55,-50,-39;
/M: SY='Y'; M=-49,-57,-50,-52, 35,-57, 12,-31,-45,  7,-25,-50,-61,-41,-42,-46,-43,-36,-10,113;
/M: SY='H'; M=-43,-54,-22, 16,-51,-41,106,-59, 16,-52,-39, 68,-46,  8,-27,-31,-36,-59,-71,-29;
/M: SY='R'; M=  5,-58,-45,-38,-50, 41,-39,-59,-17,-54,-45,-36,-51,-28, 82,-35,-45,-54, 77,-39;
/M: SY='I'; M=-43,-56,-64,-63,-27,-69,-64, 98,-57,-10,-13,-54,-52,-53,-61,-52,-36,  3,-51,-34;
/M: SY='M'; M=-42,-49,-58,-49,-26,-60,-44, 36, 12, 53, 76,-51,-54,-42,-42,-50,-38,  3,-51,-32;
/M: SY='R'; M=-42,-58,-36,-23,-55,-51,-33,-59, 77,-55,-43,-29,-46,-18, 77,-37,-39,-53,-52,-42;
/M: SY='R'; M=-45,-61,-41,-29,-54,-55,-30,-61, -1,-53,-42,-34,-53,-18,107,-39,-44,-54,-54,-40;
/M: SY='R'; M=-44,-61,-40,-28,-54,-54,-31,-60, 28,-53,-42,-33,-52,-18,103,-39,-43,-54,-53,-41;
/M: SY='Q'; M= 17,-54,-26, 49,-56,-43,-31,-24,  4,-46,  1, 30,-43, 72,  0,-29,-35,-16,-56,-44;
/M: SY='M'; M= 50,-46,-39, 20,-47,-38,-37,-38,-31,-21, 67,-37,-44, -2, 21, 29,-31,-34,-54,-42;
/M: SY='R'; M=-45,-61,-41,-29,-54,-55,-30,-61, -1,-53,-42,-34,-53,-18,107,-39,-44,-54,-54,-40;
/M: SY='A'; M= 64,-48, 23,-25,-58,-35,-37,-49,-27,-48,-40,-33,-45, 63, 24,-24,-34,-40,-55,-45;
/M: SY='K'; M=  9,-53,-37,-24,-53,-46,-35,-48, 80,-45, 43,-30,-43, 16, 31,-34,-36,-45,-51,-41;
/M: SY='L'; M= 36,-45,-57,-49,-26,-50,-45,-17,-50, 66, 45,-54,-55,-44,-49,-42,-38,-21,-50,-35;
/M: SY='E'; M= -1,-58, 30, 86,-62,-49,-31,-59,-21,-53,-48,-31,-37, 49,-29,-32,-38,-53,-58,-49;
/I:         I=-19; MI=0; MD=-61; IM=0; DM=-61;
/M: SY='D'; M= 26,-60, 39, 14,-61,-50,-48,-56,-40, -7,-51,-41,-56,-40, 14, 16,-42,-51,-70,-56; D=-19;
/I:         I=-19; DM=-61;
/M: SY='E'; M=-33,-51,-27, 53, 26,-43,-34,-46,-29, -7,-39, -8,-43, 53,-33, 51,-30,-44,-50,-35;
/M: SY='N'; M=-38,-52,-34,-38,-47, 40,-34,-46, 21, 15,-36, 58,-51,-30, 47,-33,-37,-47,-56,-44;
/M: SY='K'; M=-38,-54,-38,-28,-52,-10,-34,-50, 66,-46, 42,-30,-45,-21, 62, 16,-35,-48,-52,-41;
/M: SY='L'; M=-13,-48,-62,-56,-24,-62,-53, 53,-55, 59,-11,-57,-57,-50,-55,-50,-37, 28,-52,-34;
/M: SY='P'; M=-18,-51,-42,-38,-47,-44,-45, 27,-39,-39,-35,  3, 68,  8,-46, 34, 32, 11,-59,-46;
/M: SY='K'; M=-36,-49,-35,-32,-44,-43,-35,-41, 49, 20,-34, 40,-47,-27, 33, 33,  2,-41,-56,-41;
/I:         I=-22; MD=-71;
/M: SY='S'; M=  2,-53,  4, 26,-57,-14,-43,-14, -7,-54,-49,-33,-46,-32,  9, 50, 22,-45,-64,-50; D=-22;
/I:         I=-22; MI=0; MD=-71; IM=0; DM=-71;
/M: SY='R'; M=-44,-60,-40,-27,-54,-54,-31,-60, 39,-53,-42,-33,-51,-18,100,-38,-42,-54,-53,-41;
/M: SY='K'; M=-40,-58,-34,-18,-59,-48,-31,-56, 75,-53,-41,-27,-44, 74, 40,-32,-38,-54,-50,-41;
/M: SY='P'; M=-19,-59,-36,-28,-59,-44,-39,-54, 58,-59,-46, 27, 88,-30,  1,-35,-35,-54,-56,-52;
/M: SY='Y'; M=-50,-59,-50,-52, 40,-56,-17,-33,-45,-29,-28,-50,-62,-41,-42,-45,-44,-39, -6,119;
/M: SY='L'; M=-43,-48,-56,-46,-24,-59,-41,-15, 15, 68, 65,-52,-56, -3,-40,-50,-40,-22,-50,-32;
/M: SY='H'; M=-48,-59,-33,-33,-36,-50,134,-59,-37,-44,-31,-23,-49,-26,-31,-37,-45,-60,-62, 42;
/M: SY='E'; M=-38,-59,-10, 99,-60,-54, 36,-63,-20,-54,-49,-33,-34,-12,-29,-35,-39,-55,-59,-47;
/M: SY='S'; M=-19,-42,-33,-35,-52,-27,-37,-52,-35,-55,-49,-22,-41,-26,-39, 98,-13,-44,-60,-44;
/M: SY='R'; M=-45,-61,-41,-29,-54,-55,-30,-61, -1,-53,-42,-34,-53,-18,107,-39,-44,-54,-54,-40;
/M: SY='H'; M=-47,-59,-32,-31,-46,-49,135,-64,-31,-47,-32,-22,-48,-24, 21,-37,-46,-62,-78,-16;
/M: SY='Q'; M=-41,-54,-41,-29,-40,-52,-35,-33, 44, 39,-26,  0,-51, 56, 38,-39,-38,-19,-51,-38;
/M: SY='H'; M=-47,-59,-31,-31,-46,-49,139,-64,-36,-46,-32,-20,-48,-25,-30,-37,-46,-63,-81,-15;
/M: SY='A'; M= 89,-39,-46,-38,-54,-27,-47,-43,-40,-45,-39,-40,-44,-37,-45,-19,-30,-30,-53,-49;
/M: SY='M'; M=-41,  7,-62,-53,-25,-58,-39, 14,-49, 47,109,-53,-53,-41,-47,-51,-39,-18,-51,-30;
/M: SY='R'; M=-15,-54,-32,-26,-55,-44,-31,-57, 61,-55,-43, 43,-47,-20, 72,-14,-35,-52,-55,-43;
/M: SY='R'; M=-45,-61,-41,-29,-54,-55,-30,-61, -1,-53,-42,-34,-53,-18,107,-39,-44,-54,-54,-40;
/M: SY='P'; M= 22,-56,-42,-29,-53,-44,-40,-45, 27, -1,-37,-40, 74, 44, 20,-34,-37,-44,-53,-47;
/M: SY='R'; M=-45,-61,-41,-29,-54,-55,-30,-61, -1,-53,-42,-34,-53,-18,107,-39,-44,-54,-54,-40;
/I:         I=-24; MD=-77;
/M: SY='G'; M= 22,-56,-47,-55,-64, 84,-53,-67,-51,-64,-55,-34,-50,-48,-57,-30,-47,-59,-56,-59; D=-24;
/I:         I=-24; MI=-77; IM=-77; DM=-77;
/M: SY='P'; M=-33, 38,-34, 30,-50,-44,-42,-10,-14,-17,-40,-34, 55, -5,-41, 43, 36,-39,-59,-47;
/M: SY='G'; M=-27,-53, 22,-44,-60, 87,-45,-66,-44,-63,-53,-26,-45,-41,-51, 17,-40,-60,-55,-54;
/M: SY='G'; M=-27,-55,-42,-54,-61, 96,-49,-69,-48,-64,-53,-28,-46,-45,-55,-27,-46,-62,-52,-56;
/M: SY='R'; M=-45,-61,-41,-29,-54,-55,-30,-61, -1,-53,-42,-34,-53,-18,107,-39,-44,-54,-54,-40;
/M: SY='F'; M=-54,-49,-66,-61,113,-61,-46,-27,-57,-18,-29,-55,-64,-67,-54,-52,-45,-32,-18,  4;
/M: SY='L'; M=  3, 56, 44,-40,  3,-53,-44,-24,-49, 59,-20,-43,-57,-45,-50,-44,-39,-28,-55,-36;
/M: SY='N'; M=  8,-43,-26,-34,-51,-34,-33,-47, 14,-52,-43, 73,-43,-30,-34, 31, 56,-42,-65,-46;
/M: SY='K'; M= 38,-46,-34,-30,-53,-38,-39,-48, 57,-50,-42, 26,  3,-28,-24,  1, 41,-40,-57,-46;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 18 in 18 different sequences
Number of true positive hits 18 in 18 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
18 sequences

HAP2_KLULA  (P53768    ), HAP2_SCHPO  (P24488    ), HAP2_YEAST  (P06774    ), 
NFYA1_ARATH (Q9LXV5    ), NFYA2_ARATH (Q9M9X4    ), NFYA3_ARATH (Q93ZH2    ), 
NFYA4_ARATH (Q8VY64    ), NFYA5_ARATH (Q9SYH4    ), NFYA6_ARATH (Q9LVJ7    ), 
NFYA7_ARATH (Q84JP1    ), NFYA8_ARATH (Q9LNP6    ), NFYA9_ARATH (Q945M9    ), 
NFYAA_ARATH (Q8LFU0    ), NFYA_BOVIN  (Q5E9S2    ), NFYA_DICDI  (Q54S29    ), 
NFYA_HUMAN  (P23511    ), NFYA_MOUSE  (P23708    ), NFYA_RAT    (P18576    )
» more

PDB
[Detailed view]
1 PDB

4AWL

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