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	Entry: PS51164

General information about the entry
Entry name	CBM1_2
Accession number	PS51164
Entry type	MATRIX
Date	NOV-2005 (CREATED); NOV-2005 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation	PDOC00486
Associated ProRule	PRU00597
Name and characterization of the entry
Description	CBM1 (carbohydrate binding type-1) domain profile.
Matrix / Profile	/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=37; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=34; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.5836288; R2=0.0081856; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=845; N_SCORE=8.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=601; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-10; D=-20; I=-20; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105; A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='G'; M= 8, -8,-10,-12,-10,-20, 11,-14,-21,-13,-19,-14, -3,-12,-11,-15, 5, -4,-13,-26,-20,-11; /M: SY='C'; M= 0, -9, 14,-13, -8,-19,-17,-17,-15,-12,-14,-10, -8,-17, -5,-14, 4, 6, -7,-32,-17, -7; /M: SY='A'; M= 10,-15,-16,-18,-13,-15,-10,-18, 1,-12, -6, -2,-12,-18, -8,-14, 2, -1, 10,-26,-15,-11; /M: SY='P'; M= 5, -5,-24, -5, -1,-25, -3,-14,-20, -2,-23,-14, -3, 9, -2, -9, 5, 0,-16,-27,-20, -3; /M: SY='Q'; M= -4,-12,-24,-13, -3,-16,-19, -1, -8, -4, -4, 0,-10, -9, 2, -2, -9, -7, -7,-23, -8, -2; /M: SY='W'; M=-19,-30,-40,-30,-25, 19,-24, -6,-11,-15,-10,-10,-29,-30,-15,-15,-29,-20,-20, 88, 52,-20; /M: SY='G'; M= 7, -8,-26,-10,-11,-25, 37,-14,-30,-12,-23,-15, -2,-17,-11,-15, 1,-13,-22,-19,-20,-11; /M: SY='Q'; M= -8, -1,-29, -1, 18,-38,-19, 8,-20, 9,-20, -1, -1,-10, 55, 9, 0, -9,-29,-18,-10, 37; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='G'; M= 0, -9,-30,-10,-20,-30, 69,-20,-40,-20,-30,-20, 1,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /I: I=-6; MI=0; MD=-29; IM=0; DM=-29; /M: SY='I'; M= -6, -6,-24,-11, -4,-16,-21,-11, 3, -7, -6, 1, -1,-13, 2, -8, -3, -2, -3,-26,-10, -3; /M: SY='G'; M= -1, 2,-26, -3,-11,-25, 39,-11,-30,-13,-26,-16, 11,-18,-12,-14, 3,-11,-26,-25,-24,-11; /M: SY='W'; M=-20,-29,-36,-31,-26, 32,-26, -6, -8,-18, -6, -8,-27,-30,-20,-16,-27,-18,-16, 71, 50,-22; /M: SY='T'; M= 0, 3,-15, -2, -4,-16,-12, -8,-15, -6,-18,-11, 7, -9, -2, -7, 18, 24, -9,-32,-12, -3; /M: SY='G'; M= 0, -8,-30, -8,-19,-30, 67,-19,-39,-19,-30,-20, 1,-20,-19,-19, 1,-19,-30,-21,-30,-19; /M: SY='P'; M= 3,-12,-18, -9, -3,-25,-10,-18,-19,-10,-23,-17,-11, 32, -9,-17, 1, -4,-18,-30,-25, -8; /M: SY='T'; M= -1, -1,-14, -9, -7,-13,-16,-17,-13, -4,-13, -9, 0,-10, -6, -6, 15, 36, -5,-28,-11, -6; /I: I=-6; MI=0; MD=-29; IM=0; DM=-29; /M: SY='C'; M= 2, -7, 12,-13, -8,-19,-16,-16,-15,-11,-15,-10, -6,-18, -5,-12, 7, 10, -6,-32,-17, -7; /M: SY='C'; M=-10,-20,117,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-39,-30,-30, -9, -9,-10,-50,-30,-30; /M: SY='A'; M= 10,-10,-16,-11, -3,-19,-14,-16, -7, -5,-11, -7,-10, -9, -3,-10, 2, 0, 1,-26,-16, -3; /M: SY='S'; M= 12, -3,-15, -4, 1,-19, -5,-13,-18, -7,-22,-16, 1, -3, -3,-11, 20, 10,-11,-31,-18, -1; /M: SY='G'; M= -1,-13,-31,-11,-14,-29, 41,-20,-32,-16,-29,-19, -6, 8,-17,-19, -2,-16,-27,-23,-29,-17; /I: I=-6; MD=-32; /M: SY='Y'; M= -2,-13,-18,-16,-13, 8,-16, -4, -6,-13, -5, -6, -9,-20,-11,-13, -1, 2, -7, 0, 18,-13; D=-6; /I: I=-6; MI=-32; IM=-32; DM=-32; /M: SY='T'; M= -1, -4,-14, -9, -6,-14,-19,-16,-11, 1,-14, -8, -3,-13, -5, -3, 11, 25, -1,-28,-10, -6; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='T'; M= -4, -9,-19,-11, -6,-15,-21, -9, -4, 2,-10, -2, -7,-16, -2, -3, -1, 4, 4,-26, -7, -4; /M: SY='K'; M= -1, -8,-22, -9, 0,-12,-18,-10,-12, 7,-13, -6, -8,-14, -2, 0, -3, -3, -5,-19, -3, -2; /M: SY='I'; M= -8,-17,-23,-20,-13, -2,-25,-10, 8,-15, 6, 8,-15,-21, -5,-13,-10, -4, 4,-14, 4, -9; /M: SY='N'; M= -6, 29,-20, 14, -1,-21, 4, 5,-22, -3,-30,-20, 46,-17, -1, -3, 13, 1,-27,-38,-20, -1; /M: SY='D'; M=-11, 16,-31, 27, 17,-33,-12, -5,-29, -2,-26,-22, 3, 16, 2,-10, -1, -9,-27,-33,-21, 8; /I: I=-6; MI=0; MD=-29; IM=0; DM=-29; /M: SY='W'; M=-19,-28,-35,-29,-24, 27,-26, -3, -7,-16, -6, -6,-26,-29,-17,-15,-26,-16,-15, 66, 52,-20; /M: SY='Y'; M=-20,-21,-31,-21,-20, 28,-29, 16, -2,-10, -1, -1,-20,-29, -9,-10,-20,-11,-11, 34, 73,-18; /M: SY='S'; M= 6, -4,-15, -4, -3,-14, -4, -2,-19,-10,-25,-16, 5,-13, -2,-10, 26, 11,-11,-27, -7, -3; /M: SY='Q'; M=-10, 0,-29, 0, 19,-39,-19, 11,-20, 9,-20, -1, 1,-10, 57, 9, 1, -9,-29,-21,-10, 38; /M: SY='C'; M=-10,-20,117,-30,-30,-19,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-47,-28,-30; /M: SY='L'; M= -7,-20,-22,-23,-15, -4,-27,-15, 14,-16, 15, 9,-18,-23, -7,-11,-15, -7, 10,-20, -1,-12; /I: E1=0; IE=-105; DE=-105;
Numerical results
UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052. Total number of hits in UniProtKB/Swiss-Prot: 71 hits in 67 different sequences Number of hits on proteins that are known to belong to the set under consideration: 71 hits in 67 different sequences Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences Number of false hits (on unrelated proteins): 0 hits in 0 different sequences Number of known missed hits: 0 Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0 Precision (true hits / (true hits + false positives)): 100.00 % Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
MATRIX_TYPE: protein_domain Scaling database: UniProtKB/Swiss-Prot: window20 Matrix author: N_Hulo Taxonomic range: Eukaryotes Maximum known number of repetitions of the pattern in a single protein: 4 FT_KEY: DOMAIN FT_DESC: CBM1 VERSION: 1
Cross-references
UniProtKB/Swiss-Prot	True positive hits: AXE1_ASPFU (Q4WBW4), AXE1_HYPJE (Q99034), AXE1_NEOFI (A1DBP9), AXE1_PENPU (Q8NJP6), CBHB_ASPAC (O59843), CBHB_ASPCL (A1CU44), CBHB_ASPFC (B0Y8K2), CBHB_ASPFU (Q4WM08), CBHB_ASPNC (A2QAI7), CBHB_ASPNG (Q9UVS8), CBHB_ASPTN (Q0CMT2), CBHB_EMENI (Q8NK02), CBHB_NEOFI (A1DNL0), CBHC_ASPCL (A1CCN4), CBHC_ASPFC (B0XWL3), CBHC_ASPFU (Q4WFK4), CBHC_ASPNC (A2QYR9), CBHC_ASPTN (Q0CFP1), CBHC_EMENI (Q5B2E8), CBHC_NEOFI (A1DJQ7), CEL1_AGABI (Q00023), CEL61_THIHA (G2Q9T3), CIP2_HYPJQ (G0RV93), EGLD_ASPCL (A1C4H2), EGLD_ASPFC (B0Y9G4), EGLD_ASPFN (B8MXJ7), EGLD_ASPFU (Q4WBU0), EGLD_ASPKW (Q96WQ9), EGLD_ASPNC (A2R5N0), EGLD_ASPOR (Q2US83), EGLD_ASPTN (Q0CEU4), EGLD_EMENI (Q5BCX8), EGLD_NEOFI (A1DBS6), FAEB_PENFN (Q9HE18), GUN1_HYPJE (P07981), GUN1_TRILO (Q12714), GUN2_HYPJE (P07982), GUN3_HUMIN (Q12624), GUN4_HYPJE (O14405), GUN5_HYPJE (P43317), GUNB_FUSOX (P46236), GUNF_FUSOX (P46239), GUNK_FUSOX (P45699), GUX1A_NEUCR (Q7SA23), GUX1B_NEUCR (P38676), GUX1_HUMGT (P15828), GUX1_HYPJE (P62694), GUX1_HYPRU (P19355), GUX1_PENJA (Q06886), GUX1_PHACH (P13860), GUX1_TRIHA (Q9P8P3), GUX1_TRIKO (P62695), GUX2_AGABI (Q92400), GUX2_HYPJE (P07987), GUX3_AGABI (P49075), GUX6_HUMIN (Q9C1S9), GUXC_FUSOX (P46238), MANF_ASPCL (A1C8U0), MANF_ASPFC (B0Y9E7), MANF_ASPFN (B8NIV9), MANF_ASPFU (Q4WBS1), MANF_ASPOR (Q2U2I3), MANF_EMENI (Q5AR04), MANF_NEOFI (A1DBV1), PSBP_PORPU (P50272), XG74_HYPJQ (Q7Z9M8), YKK5_SCHPO (Q9P7F1) Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
PDB [Detailed view]	1AZ6; 1AZH; 1AZJ; 1AZK; 1CBH; 2CBH;

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