Entry: PS51164

General information about the entry

Entry name [info] CBM1_2
Accession [info] PS51164
Entry type [info] MATRIX
Date [info] NOV-2005 (CREATED); OCT-2013 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00486
Associated ProRule [info] PRU00597

Name and characterization of the entry

Description [info] CBM1 (carbohydrate binding type-1) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=37;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=34;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.5836288; R2=0.0081856; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=845; N_SCORE=8.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=601; N_SCORE=6.5; MODE=1; TEXT='R?';
/DEFAULT: M0=-10; D=-20; I=-20; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='G'; M=  8, -8,-10,-12,-10,-20, 11,-14,-21,-13,-19,-14, -3,-12,-11,-15,  5, -4,-13,-26,-20,-11;
/M: SY='C'; M=  0, -9, 14,-13, -8,-19,-17,-17,-15,-12,-14,-10, -8,-17, -5,-14,  4,  6, -7,-32,-17, -7;
/M: SY='A'; M= 10,-15,-16,-18,-13,-15,-10,-18,  1,-12, -6, -2,-12,-18, -8,-14,  2, -1, 10,-26,-15,-11;
/M: SY='P'; M=  5, -5,-24, -5, -1,-25, -3,-14,-20, -2,-23,-14, -3,  9, -2, -9,  5,  0,-16,-27,-20, -3;
/M: SY='Q'; M= -4,-12,-24,-13, -3,-16,-19, -1, -8, -4, -4,  0,-10, -9,  2, -2, -9, -7, -7,-23, -8, -2;
/M: SY='W'; M=-19,-30,-40,-30,-25, 19,-24, -6,-11,-15,-10,-10,-29,-30,-15,-15,-29,-20,-20, 88, 52,-20;
/M: SY='G'; M=  7, -8,-26,-10,-11,-25, 37,-14,-30,-12,-23,-15, -2,-17,-11,-15,  1,-13,-22,-19,-20,-11;
/M: SY='Q'; M= -8, -1,-29, -1, 18,-38,-19,  8,-20,  9,-20, -1, -1,-10, 55,  9,  0, -9,-29,-18,-10, 37;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='G'; M=  0, -9,-30,-10,-20,-30, 69,-20,-40,-20,-30,-20,  1,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/I:         I=-6; MI=0; MD=-29; IM=0; DM=-29;
/M: SY='I'; M= -6, -6,-24,-11, -4,-16,-21,-11,  3, -7, -6,  1, -1,-13,  2, -8, -3, -2, -3,-26,-10, -3;
/M: SY='G'; M= -1,  2,-26, -3,-11,-25, 39,-11,-30,-13,-26,-16, 11,-18,-12,-14,  3,-11,-26,-25,-24,-11;
/M: SY='W'; M=-20,-29,-36,-31,-26, 32,-26, -6, -8,-18, -6, -8,-27,-30,-20,-16,-27,-18,-16, 71, 50,-22;
/M: SY='T'; M=  0,  3,-15, -2, -4,-16,-12, -8,-15, -6,-18,-11,  7, -9, -2, -7, 18, 24, -9,-32,-12, -3;
/M: SY='G'; M=  0, -8,-30, -8,-19,-30, 67,-19,-39,-19,-30,-20,  1,-20,-19,-19,  1,-19,-30,-21,-30,-19;
/M: SY='P'; M=  3,-12,-18, -9, -3,-25,-10,-18,-19,-10,-23,-17,-11, 32, -9,-17,  1, -4,-18,-30,-25, -8;
/M: SY='T'; M= -1, -1,-14, -9, -7,-13,-16,-17,-13, -4,-13, -9,  0,-10, -6, -6, 15, 36, -5,-28,-11, -6;
/I:         I=-6; MI=0; MD=-29; IM=0; DM=-29;
/M: SY='C'; M=  2, -7, 12,-13, -8,-19,-16,-16,-15,-11,-15,-10, -6,-18, -5,-12,  7, 10, -6,-32,-17, -7;
/M: SY='C'; M=-10,-20,117,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-39,-30,-30, -9, -9,-10,-50,-30,-30;
/M: SY='A'; M= 10,-10,-16,-11, -3,-19,-14,-16, -7, -5,-11, -7,-10, -9, -3,-10,  2,  0,  1,-26,-16, -3;
/M: SY='S'; M= 12, -3,-15, -4,  1,-19, -5,-13,-18, -7,-22,-16,  1, -3, -3,-11, 20, 10,-11,-31,-18, -1;
/M: SY='G'; M= -1,-13,-31,-11,-14,-29, 41,-20,-32,-16,-29,-19, -6,  8,-17,-19, -2,-16,-27,-23,-29,-17;
/I:         I=-6; MD=-32;
/M: SY='Y'; M= -2,-13,-18,-16,-13,  8,-16, -4, -6,-13, -5, -6, -9,-20,-11,-13, -1,  2, -7,  0, 18,-13; D=-6;
/I:         I=-6; MI=-32; IM=-32; DM=-32;
/M: SY='T'; M= -1, -4,-14, -9, -6,-14,-19,-16,-11,  1,-14, -8, -3,-13, -5, -3, 11, 25, -1,-28,-10, -6;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='T'; M= -4, -9,-19,-11, -6,-15,-21, -9, -4,  2,-10, -2, -7,-16, -2, -3, -1,  4,  4,-26, -7, -4;
/M: SY='K'; M= -1, -8,-22, -9,  0,-12,-18,-10,-12,  7,-13, -6, -8,-14, -2,  0, -3, -3, -5,-19, -3, -2;
/M: SY='I'; M= -8,-17,-23,-20,-13, -2,-25,-10,  8,-15,  6,  8,-15,-21, -5,-13,-10, -4,  4,-14,  4, -9;
/M: SY='N'; M= -6, 29,-20, 14, -1,-21,  4,  5,-22, -3,-30,-20, 46,-17, -1, -3, 13,  1,-27,-38,-20, -1;
/M: SY='D'; M=-11, 16,-31, 27, 17,-33,-12, -5,-29, -2,-26,-22,  3, 16,  2,-10, -1, -9,-27,-33,-21,  8;
/I:         I=-6; MI=0; MD=-29; IM=0; DM=-29;
/M: SY='W'; M=-19,-28,-35,-29,-24, 27,-26, -3, -7,-16, -6, -6,-26,-29,-17,-15,-26,-16,-15, 66, 52,-20;
/M: SY='Y'; M=-20,-21,-31,-21,-20, 28,-29, 16, -2,-10, -1, -1,-20,-29, -9,-10,-20,-11,-11, 34, 73,-18;
/M: SY='S'; M=  6, -4,-15, -4, -3,-14, -4, -2,-19,-10,-25,-16,  5,-13, -2,-10, 26, 11,-11,-27, -7, -3;
/M: SY='Q'; M=-10,  0,-29,  0, 19,-39,-19, 11,-20,  9,-20, -1,  1,-10, 57,  9,  1, -9,-29,-21,-10, 38;
/M: SY='C'; M=-10,-20,117,-30,-30,-19,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-47,-28,-30;
/M: SY='L'; M= -7,-20,-22,-23,-15, -4,-27,-15, 14,-16, 15,  9,-18,-23, -7,-11,-15, -7, 10,-20, -1,-12;
/I:         E1=0; IE=-105; DE=-105;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 98 in 94 different sequences
Number of true positive hits 98 in 94 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] N_Hulo
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 4
Feature key [info] DOMAIN
Feature description [info] CBM1
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
94 sequences

AXE1_ASPFU  (Q4WBW4    ), AXE1_COPC7  (A8PB24    ), AXE1_HYPJE  (Q99034    ), 
AXE1_NEOFI  (A1DBP9    ), AXE1_TALPU  (Q8NJP6    ), CBHB_ASPAC  (O59843    ), 
CBHB_ASPCL  (A1CU44    ), CBHB_ASPFC  (B0Y8K2    ), CBHB_ASPFU  (Q4WM08    ), 
CBHB_ASPNC  (A2QAI7    ), CBHB_ASPNG  (Q9UVS8    ), CBHB_ASPTN  (Q0CMT2    ), 
CBHB_EMENI  (Q8NK02    ), CBHB_NEOFI  (A1DNL0    ), CBHC_ASPCL  (A1CCN4    ), 
CBHC_ASPFC  (B0XWL3    ), CBHC_ASPFU  (Q4WFK4    ), CBHC_ASPNC  (A2QYR9    ), 
CBHC_ASPTN  (Q0CFP1    ), CBHC_EMENI  (Q5B2E8    ), CBHC_NEOFI  (A1DJQ7    ), 
CE12C_MAGO7 (G4NBX2    ), CEL1_AGABI  (Q00023    ), CEL61_MYCTT (G2Q9T3    ), 
CEL6A_MAGO7 (G4MM92    ), CEL6A_PODAN (B2ABX7    ), CEL7A_MYCTT (G2QCS4    ), 
CHI2_METAN  (Q4U4T0    ), CHI2_METRA  (E9F9R9    ), EGLD_ASPCL  (A1C4H2    ), 
EGLD_ASPFC  (B0Y9G4    ), EGLD_ASPFN  (B8MXJ7    ), EGLD_ASPFU  (Q4WBU0    ), 
EGLD_ASPKW  (Q96WQ9    ), EGLD_ASPNC  (A2R5N0    ), EGLD_ASPOR  (Q2US83    ), 
EGLD_ASPTN  (Q0CEU4    ), EGLD_EMENI  (Q5BCX8    ), EGLD_NEOFI  (A1DBS6    ), 
FAEB_TALFU  (Q9HE18    ), FAEB_TALSN  (B8M9H9    ), GCE1_PHACR  (P0CT87    ), 
GCE1_PODAN  (B2ABS0    ), GCE_CERUI   (A0A0A7EQR3), GCE_HYPJQ   (G0RV93    ), 
GH6D_PODAN  (B2ADA5    ), GUN1_HYPJE  (P07981    ), GUN1_TRILO  (Q12714    ), 
GUN2_HYPJE  (P07982    ), GUN3_HUMIN  (Q12624    ), GUN3_NEUCR  (Q7SDR1    ), 
GUN4_HYPJE  (O14405    ), GUN5_HYPJE  (P43317    ), GUNB_FUSOX  (P46236    ), 
GUNF_FUSOX  (P46239    ), GUNK_FUSOX  (P45699    ), GUX1A_NEUCR (Q7SA23    ), 
GUX1B_NEUCR (P38676    ), GUX1_HUMGT  (P15828    ), GUX1_HYPJE  (P62694    ), 
GUX1_HYPRU  (P19355    ), GUX1_PENJA  (Q06886    ), GUX1_PHACH  (P13860    ), 
GUX1_TRIHA  (Q9P8P3    ), GUX1_TRIKO  (P62695    ), GUX2_AGABI  (Q92400    ), 
GUX2_HYPJE  (P07987    ), GUX3_AGABI  (P49075    ), GUX6_HUMIN  (Q9C1S9    ), 
GUXC_FUSOX  (P46238    ), MANF_ASPCL  (A1C8U0    ), MANF_ASPFC  (B0Y9E7    ), 
MANF_ASPFN  (B8NIV9    ), MANF_ASPFU  (Q4WBS1    ), MANF_ASPOR  (Q2U2I3    ), 
MANF_EMENI  (Q5AR04    ), MANF_NEOFI  (A1DBV1    ), PSBP_PORPU  (P50272    ), 
XG74_HYPJQ  (Q7Z9M8    ), XYN1_HUMGT  (P79046    ), XYN6_MAGGR  (Q8NJ73    ), 
XYN6_MAGO7  (G4MPQ7    ), XYNA_PHACH  (Q9HEZ1    ), XYNA_TALFU  (Q8WZJ4    ), 
XYNB_NEOPA  (Q02290    ), XYNB_PENOX  (E7EF85    ), XYNB_PHACH  (B7SIW1    ), 
XYNB_TALFU  (Q8J0K5    ), XYNC_NEOPA  (Q9UV68    ), XYNC_PHACH  (B7SIW2    ), 
XYND_GIBZE  (I1S3C6    ), XYND_TALFU  (Q5ZNB1    ), XYS20_NEOPA (A8TGA1    ), 
YKK5_SCHPO  (Q9P7F1    )
» more

PDB
[Detailed view]
9 PDB

1AZ6; 1AZH; 1AZJ; 1AZK; 1CBH; 2CBH; 2MWJ; 2MWK; 4BMF

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