Entry: PS51170

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General information about the entry

Entry name [info] CW
Accession [info] PS51170
Entry type [info] MATRIX
Date [info] DEC-2005 (CREATED); OCT-2013 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51170
Associated ProRule [info] PRU00591

Name and characterization of the entry

Description [info] Cell wall-binding repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=20;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=20;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.0656130; R2=0.0082735; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1045.36008; R2=6.89432; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=899; N_SCORE=8.7; H_SCORE=6409; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=657; N_SCORE=5.5; H_SCORE=4741; MODE=1; TEXT='RR';
/DEFAULT: M0=-17; D=-80; I=-80; B1=-200; E1=-200; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='Q'; M= 12,-41,-20,  5,-25,-42,-18,-18, 33,-12,-12,-19,-41, 42,  9,  2,  9, 16,-61,-11;
/M: SY='T'; M=-23,-54, -5,-24,-37,-19,-45, -3,  7,-35,-38, 59,-41,-12,-42, 10, 65,-17,-68,-15;
/M: SY='G'; M=-13,-62,-14,  4,-53, 78,-36,-65,-15,-64,-49,-14,-48,  9,  5,-10,-11,-63,-61,-42;
/M: SY='W'; M=-36,-68,-63,-36, 60,-63,-38,-14,-47,  3,-21,-52,-53,-34,-58,-39,-45,-26,138, 36;
/M: SY='Q'; M=-22,-60,-54,-24,  6,-43,  0, 30, 13,  0,-22,-27,-59, 55, -9,-38,-11, 37,-57, 12;
/M: SY='Q'; M=-35,-46,-18, 14, -9,-51,-12,-19, 34,-39,-28, 36,-45, 44, -9, -3, 41,-27,-24, 17;
/M: SY='I'; M=-33,-58, 37, -6,-16,-39,-21, 61,-23, -1,-28, -6,-58,-17,-54,-20, -9, 14,-12, 11;
/I:         I=-21; MI=0; MD=-65; IM=0; DM=-65;
/M: SY='N'; M=-17,-60, 63, -4,-63, 16,-33,-60,  3,-61,-51, 71,-34,-10,-33,  8,-31,-59,-72,-13;
/M: SY='G'; M=-35,-61, 30,-22,-55, 72,-39,-69,-13,-61,-58, 45,-44, -1,-46, -1,-20,-65,-65,-22;
/I:         I=-21; MI=0; MD=-65; IM=0; DM=-65;
/M: SY='N'; M=-16,-34,  2, -7,-59, -6,  6,-28, 47,-55,-32, 56,-49, 24,-17, 14,  6,-32,-41,-11;
/M: SY='W'; M=-47,-61,-33,-46,-15,-51, -7,-26,  7,-38,-26,-15,-48, -9, -9,-37, 24,-38,141, 41;
/M: SY='Y'; M=-44,-66,-59,-59, 36,-64,  2,-36,-45,-17,-21,-57,-68,-30,-21,-38,-35,-26, 37,114;
/M: SY='Y'; M=-52,-37,-44,-59, 23,-29, 14,-41,-50,-25,-32,-46,-68,-48,-48,-48,-52,-45, 19,120;
/M: SY='F'; M=-26,-45,-54,-64, 95,-64,-47, -5,-57, 25, -7,-48,-69,-42,-49,-35,-47, -4,-36, 22;
/M: SY='D'; M=-31,-61, 75, -5,-38,  3,-25,-59, 15,-45,-48, 59,-44,-15,-11, -7,-17,-62,-73,-32;
/M: SY='S'; M= 13,-59, 29, 25,-57,-12,-22,-53,  8,-54,-54, 32, 24, 16,-28, 36, -1,-43,-68,-34;
/M: SY='D'; M=-30,-59, 69,-10,-53,-22,-38,-53, -6,-47,-57, 67,-47, -1,-42, 25,  4,-56,-30,-15;
/M: SY='G'; M=-30,-50,-48,-47,-65, 91,-40,-71,-45,-63,-59,  6,-54,-51,-50,-12,-10,-59,-60,-22;
/M: SY='Y'; M=  9,-47,-39, -5,-36,  3,  7, 15, 13,-30,-19,  1,-33, 11,  1, 12, 11, 15,-60, 15;
/M: SY='M'; M= 12,-29,-22,-26,-25,-30,-21, -1,-18, 10, 92,-19,-39, 20,-13,-31,-33, -1,-49, 15;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 184 in 15 different sequences
Number of true positive hits 184 in 15 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 32
Feature key [info] REPEAT
Feature description [info] Cell wall-binding
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
15 sequences

ALYS_BPDP1  (O03979), ALYS_BPHB3  (P32762), ALYS_STRPN  (P06653), 
GTF1_STRDO  (P11001), GTF2_STRDO  (P27470), GTFB_STRMU  (P08987), 
GTFC_STRMU  (P13470), GTFD_STRMU  (P49331), GTFS_STRDO  (P29336), 
LYS_BPCP1   (P15057), LYS_BPCP9   (P19386), LYTB_STRPN  (P59205), 
LYTB_STRR6  (P59206), TOXA_PEPDI  (P16154), TOXB_PEPDI  (P18177)
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PDB
[Detailed view]
15 PDB

1GVM; 1H09; 1H8G; 1HCX; 1OBA; 2BML; 2F6E; 2G7C; 2IXU; 2IXV; 2J8F; 2J8G; 2QJ6; 4NC2; 4NP4
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