Entry: PS51170

General information about the entry

Entry name [info] CW
Accession [info] PS51170
Entry type [info] MATRIX
Date [info] DEC-2005 (CREATED); OCT-2013 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC51170
Associated ProRule [info] PRU00591

Name and characterization of the entry

Description [info] Cell wall-binding repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=20;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=20;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.0656130; R2=0.0082735; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1045.36008; R2=6.89432; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=899; N_SCORE=8.7; H_SCORE=6409; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=657; N_SCORE=5.5; H_SCORE=4741; MODE=1; TEXT='RR';
/DEFAULT: M0=-17; D=-80; I=-80; B1=-200; E1=-200; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='Q'; M= 12,-41,-20,  5,-25,-42,-18,-18, 33,-12,-12,-19,-41, 42,  9,  2,  9, 16,-61,-11;
/M: SY='T'; M=-23,-54, -5,-24,-37,-19,-45, -3,  7,-35,-38, 59,-41,-12,-42, 10, 65,-17,-68,-15;
/M: SY='G'; M=-13,-62,-14,  4,-53, 78,-36,-65,-15,-64,-49,-14,-48,  9,  5,-10,-11,-63,-61,-42;
/M: SY='W'; M=-36,-68,-63,-36, 60,-63,-38,-14,-47,  3,-21,-52,-53,-34,-58,-39,-45,-26,138, 36;
/M: SY='Q'; M=-22,-60,-54,-24,  6,-43,  0, 30, 13,  0,-22,-27,-59, 55, -9,-38,-11, 37,-57, 12;
/M: SY='Q'; M=-35,-46,-18, 14, -9,-51,-12,-19, 34,-39,-28, 36,-45, 44, -9, -3, 41,-27,-24, 17;
/M: SY='I'; M=-33,-58, 37, -6,-16,-39,-21, 61,-23, -1,-28, -6,-58,-17,-54,-20, -9, 14,-12, 11;
/I:         I=-21; MI=0; MD=-65; IM=0; DM=-65;
/M: SY='N'; M=-17,-60, 63, -4,-63, 16,-33,-60,  3,-61,-51, 71,-34,-10,-33,  8,-31,-59,-72,-13;
/M: SY='G'; M=-35,-61, 30,-22,-55, 72,-39,-69,-13,-61,-58, 45,-44, -1,-46, -1,-20,-65,-65,-22;
/I:         I=-21; MI=0; MD=-65; IM=0; DM=-65;
/M: SY='N'; M=-16,-34,  2, -7,-59, -6,  6,-28, 47,-55,-32, 56,-49, 24,-17, 14,  6,-32,-41,-11;
/M: SY='W'; M=-47,-61,-33,-46,-15,-51, -7,-26,  7,-38,-26,-15,-48, -9, -9,-37, 24,-38,141, 41;
/M: SY='Y'; M=-44,-66,-59,-59, 36,-64,  2,-36,-45,-17,-21,-57,-68,-30,-21,-38,-35,-26, 37,114;
/M: SY='Y'; M=-52,-37,-44,-59, 23,-29, 14,-41,-50,-25,-32,-46,-68,-48,-48,-48,-52,-45, 19,120;
/M: SY='F'; M=-26,-45,-54,-64, 95,-64,-47, -5,-57, 25, -7,-48,-69,-42,-49,-35,-47, -4,-36, 22;
/M: SY='D'; M=-31,-61, 75, -5,-38,  3,-25,-59, 15,-45,-48, 59,-44,-15,-11, -7,-17,-62,-73,-32;
/M: SY='S'; M= 13,-59, 29, 25,-57,-12,-22,-53,  8,-54,-54, 32, 24, 16,-28, 36, -1,-43,-68,-34;
/M: SY='D'; M=-30,-59, 69,-10,-53,-22,-38,-53, -6,-47,-57, 67,-47, -1,-42, 25,  4,-56,-30,-15;
/M: SY='G'; M=-30,-50,-48,-47,-65, 91,-40,-71,-45,-63,-59,  6,-54,-51,-50,-12,-10,-59,-60,-22;
/M: SY='Y'; M=  9,-47,-39, -5,-36,  3,  7, 15, 13,-30,-19,  1,-33, 11,  1, 12, 11, 15,-60, 15;
/M: SY='M'; M= 12,-29,-22,-26,-25,-30,-21, -1,-18, 10, 92,-19,-39, 20,-13,-31,-33, -1,-49, 15;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 184 in 15 different sequences
Number of true positive hits 184 in 15 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 32
Feature key [info] REPEAT
Feature description [info] Cell wall-binding
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
15 sequences

ALYS_BPDP1  (O03979), ALYS_BPHB3  (P32762), ALYS_STRPN  (P06653), 
GTF1_STRDO  (P11001), GTF2_STRDO  (P27470), GTFB_STRMU  (P08987), 
GTFC_STRMU  (P13470), GTFD_STRMU  (P49331), GTFS_STRDO  (P29336), 
LYS_BPCP1   (P15057), LYS_BPCP9   (P19386), LYTB_STRPN  (P59205), 
LYTB_STRR6  (P59206), TOXA_PEPDI  (P16154), TOXB_PEPDI  (P18177)
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PDB
[Detailed view]
15 PDB

1GVM; 1H09; 1H8G; 1HCX; 1OBA; 2BML; 2F6E; 2G7C; 2IXU; 2IXV; 2J8F; 2J8G; 2QJ6; 4NC2; 4NP4
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