Entry: PS51190

Forthcoming changes to the profile format
General information about the entry

Entry name [info] FATC
Accession [info] PS51190
Entry type [info] MATRIX
Date [info] MAR-2006 (CREATED); OCT-2013 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51189
Associated ProRule [info] PRU00535

Name and characterization of the entry

Description [info] FATC domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=33;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=30;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4131293; R2=0.0067563; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2300.17259; R2=9.53807; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=1123; N_SCORE=10.0; H_SCORE=11600; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=605; N_SCORE=6.5; H_SCORE=8071; MODE=1; TEXT='?';
/DEFAULT: M0=-42; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-105; BD=-105;
/M: SY='E'; M= -18, -95,  13,  37, -27,   0, -15, -27,  10,   6, -57,  24, -28,  19,  10, -10,  21, -24,-104, -52;
/M: SY='P'; M=   0, -68,   3,  -9, -32,   9, -89, -99,   4, -32,  -7,  36,  69, -36, -15,   1,   9,  -4,-106, -58;
/M: SY='L'; M= -96, -92, -43, -47, -32, -72, -22, -23, -48,  74,  38, -96, -43,  15, -38, -13,  -9,  -2,-103, -36;
/M: SY='S'; M= -76, -98,  23, -90, -99,  -9, -90, -57, -69, -61,-106,  33,  25,  -1, -19,  81,   1,   8,-111, -99;
/M: SY='V'; M=   5,   6, -94,  13, -94, -47, -97,  25, -25, -60, -96, -28,  10, -98, -39, -50,   1,  77,-110, -93;
/M: SY='E'; M= -27, -31,  14,  63,-106, -48,  25, -32,   2, -97, -44,  45,  32,   4, -13,   7,  13,-103,-106, -46;
/M: SY='Q'; M=  12, -98,  25,  25,-104,  38, -47, -39, -29, -46,-100, -15, -93,  59, -19,  20,   6, -22,-101, -46;
/M: SY='Q'; M= -68, -16, -41, -39,   0, -66,  35, -19, -15, -50, -99, -92, -93, 113, -48, -16,  22, -80, -99,   3;
/M: SY='V'; M=  -1,   2, -97,-103, -89, -53,-101,  36,-100, -34, -93, -96,-107,-104, -96, -92, -17,  93,-111, -90;
/M: SY='D'; M= -29, -94,  53,  37,-102, -47,  -9,   2, -40,  -8,-100,  51, -96,  36,   5,  30, -94, -58,-108, -98;
/I:         I=-10; MD=-22;
/M: SY='D'; M= -33,  23,  43,  40, -25,-102,   2, -52,  25, -23,  18, -93, -95,   3,  35,  -5,  -6, -29,-102,   0; D=-10;
/I:         I=-10; MI=0; MD=-22; IM=0; DM=-22;
/M: SY='L'; M= -27,  15, -93, -93, -32,-103, -93, -25,-100,  90, -85, -98,-106, -99, -98, -97, -93, -29,-102, -30;
/M: SY='I'; M= -94, -95,-105,-103, -88, -99, -96, 102,-101,   8, -14, -49,-106,-101,-101, -93, -38,  20,-108, -90;
/M: SY='Q'; M=  14, -97,  19,  23, -67, -51,  20, -28,  23, -77, -62,   1, -93,  69,  12,  40, -80, -43,-106, -98;
/M: SY='Q'; M=  -5,   4,   6,  66,-107,-100,  20, -74, -21, -33, -17, -60, -91,  85, -12,   5, -51, -59,-102, -97;
/M: SY='A'; M=  99,-100, -84, -89,-100, -92, -95, -97, -90,-100, -94, -90, -96, -85, -91,  33, -88, -89,-119,-113;
/M: SY='T'; M= -38,  -6, -92, -95, -99,-100, -95,   2,  -7, -59,  24, -26, -96,  -7, -56,  11,  94,  25,-115, -95;
/M: SY='D'; M= -25, -44,  76, -87,-103, -92, -92,-103, -30, -81,-106,  71, -98, -93, -11,  69, -89,-102,-117,-103;
/M: SY='P'; M= -39, -99, -24,  -2,-100, -97,  22,  12,  -8,   0,-101, -17,  85, -94, -94,  12,   0,  26,-109, -95;
/M: SY='E'; M= -75, -93,  47,  70,-107, -99,   1,-107,  13, -59, -49,  22, -55,  14,  48,  -5, -30, -59,-104, -97;
/M: SY='N'; M= -94, -92, -83, -91, -95, -93,  -4, -27, -34,  -9, -96, 120,-106, -37, -16, -47, -89, -45,-124, -35;
/M: SY='L'; M=-101, -89, -93, -93, -79,-103, -92, -13,-100,  93, -84, -98,-106, -99, -99, -98, -92, -35,-102,  -6;
/M: SY='C'; M=  63,  98, -90, -88,-101,   7, -27, -99, -57, -98,-101, -91, -98, -93, -93,  55, -27, -71,-107,-111;
/M: SY='Q'; M=   0, -17, -74,   0,-100,-101, -31, -56,  15, -18,   0, -47, -44,  85,  50,  -4, -18,   5,-102, -93;
/M: SY='M'; M=  -7,  43, -98, -92, -98, -57,  30,  -2, -88,   3, 122, -43,-106, -95, -92, -14,  21, -37,-108, -94;
/M: SY='Y'; M=-106,-107,  50, -59,  61, -60, -92,-100, -31, -53,-103,-102, -13, -98, -87, -95,-102, -58,  72, 106;
/I:         I=-9; MI=0; MD=-18; IM=0; DM=-18;
/M: SY='P'; M=   1,  24, -63,  17,  -5, -44, -31,  49, -54, -19, -21, -42,  55,  14, -56, -19, -39,  22,-105, -95;
/M: SY='G'; M= -18,-104, -91, -66,-103,  91, -97, -98, -95, -10,-102, -43, -94, -99, -97, -16,  24,-103,  56,-100;
/M: SY='W'; M=-117, -92,-109, -93,  13, -86,-107,-107, -67, -98,-109,-127,-103, -97, -88, -73,-120, -76, 177,  19;
/M: SY='M'; M=   3,  80, -67, -17,-100, -21,  57, -67, -50, -19,  92, -92,-100,  18, -62,  17,   1, -75,-102,   6;
/M: SY='P'; M=  48,-104, -89, -85,-109, -79, -84,-105, -61,-105,-111,-100, 112, -38, -92,  16, -92,-104,-109,-105;
/M: SY='W'; M= -69, -97,-108, -98,  74, -94, -24,-100, -99, -30, -60, -63,-105, -57, -88, -99, -33,-100, 151,  59;
/M: SY='W'; M= -69, -28,-101, -96,  39, -98, -49,  11, -98,  47,  43, -60,-107, -58, -93, -98, -54,   9, 118,  22;
/I:         E1=0; IE=-105; DE=-105;
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Post-processing [info]

PROMOTED_BY PS51189

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 69 in 68 different sequences
Number of true positive hits 69 in 68 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Feature key [info] DOMAIN
Feature description [info] FATC
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
68 sequences

ATM_ARATH   (Q9M3G7), ATM_ASHGO   (Q751J3), ATM_ASPFU   (Q4WVM7), 
ATM_ASPOR   (Q2U639), ATM_CAEEL   (Q9N3Q4), ATM_CANAL   (Q5ABX0), 
ATM_CANGA   (Q6FRZ9), ATM_CRYNB   (P0CP61), ATM_CRYNJ   (P0CP60), 
ATM_DEBHA   (Q6BV76), ATM_DROME   (Q5EAK6), ATM_EMENI   (Q5BHE2), 
ATM_GIBZE   (Q4IB89), ATM_HUMAN   (Q13315), ATM_KLULA   (Q6CP76), 
ATM_MOUSE   (Q62388), ATM_NEUCR   (Q7RZT9), ATM_PIG     (Q6PQD5), 
ATM_SCHPO   (O74630), ATM_YARLI   (Q6CAD2), ATM_YEAST   (P38110), 
ATR1_DICDI  (Q54ER4), ATR_ARATH   (Q9FKS4), ATR_ASHGO   (Q75DB8), 
ATR_CAEEL   (Q22258), ATR_CANAL   (Q59LR2), ATR_CANGA   (Q6FX42), 
ATR_DROME   (Q9VXG8), ATR_ENCCU   (Q8SSE7), ATR_HUMAN   (Q13535), 
ATR_KLULA   (Q6CT34), ATR_MOUSE   (Q9JKK8), ATR_ORYSI   (A2YH41), 
ATR_ORYSJ   (Q5Z987), ATR_XENLA   (Q9DE14), ATR_YEAST   (P38111), 
MTOR_HUMAN  (P42345), MTOR_MOUSE  (Q9JLN9), MTOR_RAT    (P42346), 
PRKDC_CANFA (Q8WN22), PRKDC_CHICK (Q8QGX4), PRKDC_DICDI (Q54UC0), 
PRKDC_HUMAN (P78527), PRKDC_MOUSE (P97313), PRKDC_XENLA (Q9DEI1), 
RAD3_SCHPO  (Q02099), SMG1_CAEBR  (Q61CW2), SMG1_CAEEL  (O01510), 
SMG1_DICDI  (Q553E9), SMG1_DROME  (Q70PP2), SMG1_HUMAN  (Q96Q15), 
SMG1_MOUSE  (Q8BKX6), TOR1_SCHPO  (O14356), TOR1_YEAST  (P35169), 
TOR2_SCHPO  (Q9Y7K2), TOR2_YEAST  (P32600), TOR_ARATH   (Q9FR53), 
TOR_CAEEL   (Q95Q95), TOR_DICDI   (Q86C65), TOR_DROME   (Q9VK45), 
TOR_ORYSJ   (Q0DJS1), TRA1_DICDI  (Q54T85), TRA1_DROME  (Q8I8U7), 
TRA1_SCHPO  (Q9HFE8), TRA1_YEAST  (P38811), TRRAP_HUMAN (Q9Y4A5), 
TRRAP_MOUSE (Q80YV3), YAMB_SCHPO  (Q10064)
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