Entry: PS51213

Forthcoming changes to the profile format
General information about the entry

Entry name [info] ELK
Accession [info] PS51213
Entry type [info] MATRIX
Date [info] MAY-2006 (CREATED); OCT-2013 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51213
Associated ProRule [info] PRU00559

Name and characterization of the entry

Description [info] ELK domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=21;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=19;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.8947136; R2=0.0174515; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=392.65826; R2=8.49300; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=436; N_SCORE=8.5; H_SCORE=3603; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=322; N_SCORE=6.5; H_SCORE=3119; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='E'; M=-12, 20,-28, 31, 41,-31,-17, -2,-31,  5,-22,-22,  6, -4, 11, -4,  2, -3,-27,-33,-19, 26;
/M: SY='L'; M= -9,-23,-21,-26,-15,  1,-29,-18, 16,-23, 32, 14,-22,-24,-10,-17,-20, -3,  7,-21, -2,-13;
/M: SY='K'; M=-12, -2,-30, -2,  8,-28,-20, -8,-30, 46,-28,-10,  0,-12, 10, 39,-10,-10,-20,-20,-10,  8;
/M: SY='H'; M=-13,  3,-25,  2,  1,-17,-19, 10,-16,  5,-12, -7,  5,-19,  0,  7, -8, -9,-13,-26, -4, -1;
/M: SY='E'; M= -6, -5,-26, -4, 13,-21,-19, 12,-18,  2, -8, -2, -4,-14, 13,  8, -7,-10,-18,-24, -7, 11;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='M'; M=-11,-16,-25,-17, -7, -9,-24,-12, -4,  9,  9, 10,-14,-20, -3, 10,-19,-10, -5,-20, -5, -6;
/M: SY='Q'; M=-12,  5,-28,  2, 10,-30,-16,  3,-25, 22,-24, -8, 11,-14, 27, 25, -3, -8,-25,-24,-12, 17;
/M: SY='K'; M= -7, -3,-30, -3,  2,-30,  3,-13,-33, 32,-30,-13,  0,-13,  2, 17, -7,-13,-23,-20,-15,  2;
/M: SY='Y'; M=-20,-22,-28,-24,-22, 40,-30, 12,  0,-14,  2,  0,-20,-30,-16,-12,-20,-10, -8, 26, 70,-22;
/M: SY='G'; M= -2, -4,-23, -4, -3,-25, 11,-11,-29,  6,-28,-16,  4,-14, -1,  9, 11, -1,-19,-27,-19, -3;
/M: SY='G'; M= -3, -2,-26,  0,  0,-29, 23, -9,-32, -5,-27,-17,  3,-15,  1, -2,  7, -8,-25,-26,-22,  0;
/M: SY='Y'; M=-16, -9,-13, -9, -1, -7,-24, 13,-21,  7,-15, -8, -7,-22,  0, 12,-12,-11,-18,-10, 18, -4;
/M: SY='L'; M=-10,-30,-23,-33,-23,  7,-33,-23, 30,-30, 40, 20,-27,-27,-20,-23,-27,-10, 16,-20,  0,-23;
/M: SY='S'; M=  0, -4,-19, -5, -4,-17,  5,-13,-14,-13,-14,-11,  2,-17, -9,-13,  8,  0, -8,-31,-18, -6;
/M: SY='D'; M=  0, 14,-20, 17,  9,-26, -4, -7,-26, -3,-24,-20, 10,-10,  0, -5, 13,  5,-18,-33,-19,  4;
/M: SY='L'; M= -9,-30,-20,-31,-23,  7,-31,-23, 25,-29, 41, 19,-29,-29,-21,-21,-26, -9, 17,-21, -1,-23;
/M: SY='R'; M=-16,-12,-34,-12, -2,-18,-20, -9,-28, 28,-24,-12, -7,-18,  5, 39,-15,-14,-22, 11, -3,  0;
/M: SY='E'; M= -1, -1,-23,  0, 21,-23,-17, -6,-19,  4,-12,-10, -3, -9, 12,  2,  2,  0,-17,-26,-15, 16;
/M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20,  0,-30, 10,-20,-20,  0,  0, 20,  0,  0,-10,-30,-30,-20, 40;
/M: SY='F'; M=-15,-30,-24,-38,-28, 39,-34,-24, 22,-30, 20, 11,-22,-26,-29,-24,-22,-10, 13, -6, 14,-28;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 46 in 46 different sequences
Number of true positive hits 46 in 46 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] ELK
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
46 sequences

HD1_BRANA   (P46606), HLG3_MAIZE  (P56669), HSBH1_SOYBN (P46608), 
KN1_MAIZE   (P24345), KN1_SOLLC   (Q41330), KNAP1_MALDO (O04134), 
KNAP2_MALDO (O04135), KNAP3_MALDO (O04136), KNAT1_ARATH (P46639), 
KNAT2_ARATH (P46640), KNAT3_ARATH (P48000), KNAT4_ARATH (P48001), 
KNAT5_ARATH (P48002), KNAT6_ARATH (Q84JS6), KNAT7_ARATH (Q9FPQ8), 
KNOS1_ORYSJ (Q9FP29), KNOS2_ORYSJ (Q0E3C3), KNOS3_ORYSJ (Q94LW3), 
KNOS4_ORYSJ (Q75LX7), KNOS5_ORYSJ (Q75LX9), KNOS6_ORYSJ (P46609), 
KNOS7_ORYSJ (Q948L5), KNOS8_ORYSJ (Q10ED2), KNOS9_ORYSJ (Q10EC6), 
KNOSA_ORYSI (A2Y007), KNOSA_ORYSJ (Q7GDL5), KNOSB_ORYSJ (Q94LW4), 
KNOSC_ORYSI (O65034), KNOSC_ORYSJ (O80416), KNOSD_ORYSJ (Q0J6N4), 
KNOX1_MAIZE (P56659), KNOX2_MAIZE (P56660), KNOX3_HORVU (Q43484), 
KNOX3_MAIZE (P56661), KNOX4_MAIZE (P56662), KNOX5_MAIZE (P56663), 
KNOX6_MAIZE (P56664), KNOX7_MAIZE (P56665), KNOX8_MAIZE (P56666), 
KNX10_MAIZE (P56667), KNX11_MAIZE (P56668), LET12_SOLLC (O22300), 
LET6_SOLLC  (O22299), RSH1_MAIZE  (Q41853), STM_ARATH   (Q38874), 
STM_BRAOL   (Q9M6D9)
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