Entry: PS51213

General information about the entry

Entry name [info] ELK
Accession [info] PS51213
Entry type [info] MATRIX
Date [info] MAY-2006 (CREATED); OCT-2013 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC51213
Associated ProRule [info] PRU00559

Name and characterization of the entry

Description [info] ELK domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=21;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=19;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.8947136; R2=0.0174515; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=392.65826; R2=8.49300; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=436; N_SCORE=8.5; H_SCORE=3603; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=322; N_SCORE=6.5; H_SCORE=3119; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='E'; M=-12, 20,-28, 31, 41,-31,-17, -2,-31,  5,-22,-22,  6, -4, 11, -4,  2, -3,-27,-33,-19, 26;
/M: SY='L'; M= -9,-23,-21,-26,-15,  1,-29,-18, 16,-23, 32, 14,-22,-24,-10,-17,-20, -3,  7,-21, -2,-13;
/M: SY='K'; M=-12, -2,-30, -2,  8,-28,-20, -8,-30, 46,-28,-10,  0,-12, 10, 39,-10,-10,-20,-20,-10,  8;
/M: SY='H'; M=-13,  3,-25,  2,  1,-17,-19, 10,-16,  5,-12, -7,  5,-19,  0,  7, -8, -9,-13,-26, -4, -1;
/M: SY='E'; M= -6, -5,-26, -4, 13,-21,-19, 12,-18,  2, -8, -2, -4,-14, 13,  8, -7,-10,-18,-24, -7, 11;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='M'; M=-11,-16,-25,-17, -7, -9,-24,-12, -4,  9,  9, 10,-14,-20, -3, 10,-19,-10, -5,-20, -5, -6;
/M: SY='Q'; M=-12,  5,-28,  2, 10,-30,-16,  3,-25, 22,-24, -8, 11,-14, 27, 25, -3, -8,-25,-24,-12, 17;
/M: SY='K'; M= -7, -3,-30, -3,  2,-30,  3,-13,-33, 32,-30,-13,  0,-13,  2, 17, -7,-13,-23,-20,-15,  2;
/M: SY='Y'; M=-20,-22,-28,-24,-22, 40,-30, 12,  0,-14,  2,  0,-20,-30,-16,-12,-20,-10, -8, 26, 70,-22;
/M: SY='G'; M= -2, -4,-23, -4, -3,-25, 11,-11,-29,  6,-28,-16,  4,-14, -1,  9, 11, -1,-19,-27,-19, -3;
/M: SY='G'; M= -3, -2,-26,  0,  0,-29, 23, -9,-32, -5,-27,-17,  3,-15,  1, -2,  7, -8,-25,-26,-22,  0;
/M: SY='Y'; M=-16, -9,-13, -9, -1, -7,-24, 13,-21,  7,-15, -8, -7,-22,  0, 12,-12,-11,-18,-10, 18, -4;
/M: SY='L'; M=-10,-30,-23,-33,-23,  7,-33,-23, 30,-30, 40, 20,-27,-27,-20,-23,-27,-10, 16,-20,  0,-23;
/M: SY='S'; M=  0, -4,-19, -5, -4,-17,  5,-13,-14,-13,-14,-11,  2,-17, -9,-13,  8,  0, -8,-31,-18, -6;
/M: SY='D'; M=  0, 14,-20, 17,  9,-26, -4, -7,-26, -3,-24,-20, 10,-10,  0, -5, 13,  5,-18,-33,-19,  4;
/M: SY='L'; M= -9,-30,-20,-31,-23,  7,-31,-23, 25,-29, 41, 19,-29,-29,-21,-21,-26, -9, 17,-21, -1,-23;
/M: SY='R'; M=-16,-12,-34,-12, -2,-18,-20, -9,-28, 28,-24,-12, -7,-18,  5, 39,-15,-14,-22, 11, -3,  0;
/M: SY='E'; M= -1, -1,-23,  0, 21,-23,-17, -6,-19,  4,-12,-10, -3, -9, 12,  2,  2,  0,-17,-26,-15, 16;
/M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20,  0,-30, 10,-20,-20,  0,  0, 20,  0,  0,-10,-30,-30,-20, 40;
/M: SY='F'; M=-15,-30,-24,-38,-28, 39,-34,-24, 22,-30, 20, 11,-22,-26,-29,-24,-22,-10, 13, -6, 14,-28;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 46 in 46 different sequences
Number of true positive hits 46 in 46 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] ELK
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
46 sequences

HD1_BRANA   (P46606), HLG3_MAIZE  (P56669), HSBH1_SOYBN (P46608), 
KN1_MAIZE   (P24345), KN1_SOLLC   (Q41330), KNAP1_MALDO (O04134), 
KNAP2_MALDO (O04135), KNAP3_MALDO (O04136), KNAT1_ARATH (P46639), 
KNAT2_ARATH (P46640), KNAT3_ARATH (P48000), KNAT4_ARATH (P48001), 
KNAT5_ARATH (P48002), KNAT6_ARATH (Q84JS6), KNAT7_ARATH (Q9FPQ8), 
KNOS1_ORYSJ (Q9FP29), KNOS2_ORYSJ (Q0E3C3), KNOS3_ORYSJ (Q94LW3), 
KNOS4_ORYSJ (Q75LX7), KNOS5_ORYSJ (Q75LX9), KNOS6_ORYSJ (P46609), 
KNOS7_ORYSJ (Q948L5), KNOS8_ORYSJ (Q10ED2), KNOS9_ORYSJ (Q10EC6), 
KNOSA_ORYSI (A2Y007), KNOSA_ORYSJ (Q7GDL5), KNOSB_ORYSJ (Q94LW4), 
KNOSC_ORYSI (O65034), KNOSC_ORYSJ (O80416), KNOSD_ORYSJ (Q0J6N4), 
KNOX1_MAIZE (P56659), KNOX2_MAIZE (P56660), KNOX3_HORVU (Q43484), 
KNOX3_MAIZE (P56661), KNOX4_MAIZE (P56662), KNOX5_MAIZE (P56663), 
KNOX6_MAIZE (P56664), KNOX7_MAIZE (P56665), KNOX8_MAIZE (P56666), 
KNX10_MAIZE (P56667), KNX11_MAIZE (P56668), LET12_SOLLC (O22300), 
LET6_SOLLC  (O22299), RSH1_MAIZE  (Q41853), STM_ARATH   (Q38874), 
STM_BRAOL   (Q9M6D9)
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