Entry: PS51320

Forthcoming changes to the profile format
General information about the entry

Entry name [info] TIFY
Accession [info] PS51320
Entry type [info] MATRIX
Date [info] JUN-2007 (CREATED); OCT-2013 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51320
Associated ProRule [info] PRU00650

Name and characterization of the entry

Description [info] Tify domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=36;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=33;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1848539; R2=0.0092429; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=425.41358; R2=16.05864; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=792; N_SCORE=8.5; H_SCORE=11393; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=576; N_SCORE=6.5; H_SCORE=9659; MODE=1; TEXT='?';
/DEFAULT: M0=-12; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='P'; M= 17,-35,-24, 19,-32,-13,-27,-21,-11,  3, -2,-24, 39,  0,  5, 10,  6,  2,-42,-31;
/M: SY='P'; M= 11,-35,  2, 16, -5,-16, 14,-20, -3,-25, -9, 12, 35,  5,-23, 19, 14,-19,-42,-26;
/M: SY='P'; M= 28,-36, 10, 15,-42, 24,-26,-25,-22,-36,-12, -6, 41,  5,-28, 18,-15,-23,-42,-35;
/M: SY='E'; M= 19,-36,  5, 34,-41, 17,-23,-35,  4,-24,-29,  4,  9, 15,-12,  9,  3,-24,-42,-33;
/M: SY='T'; M= 15,  9,  0,-11,-37, -7,-27,-27,-14,-32,-27, -5, 23, -6, -3, 33, 37, -1,-46,-32;
/M: SY='Q'; M= 27,-34, 10, 19,-40,-16,-22,-33,  9,-27,-27, 13, -5, 29, -1, 17, 12,-20,-43,-31;
/M: SY='Q'; M=-24,-48,-20,  2,-48,-31,-15,-25, -6,-35,-23, -3, 46, 87, 18,-15,-14,-37,-38,-28;
/M: SY='M'; M=-30,-33,-48,-40, 19,-47,-28,  9,-39, 60, 60,-43,-44,-32,-36,-39,-26, -4,-32,-12;
/M: SY='T'; M=-16,-25,-22,-24,-30,-32,-32,-18,-10,-25,-22,-11,-23,-25,-28, -1, 86,  3,-51,-29;
/M: SY='I'; M=-28,-39,-49,-46,-11,-52,-43, 75,-41, 26, 29,-40,-38,-37,-43,-37,-23, 14,-36,-19;
/M: SY='F'; M=-30,-34,-44,-41, 86,-40,-29,  2,-37, -2, 13,-34,-44,-40,-36, 10,-23,  0,-11, 24;
/M: SY='Y'; M=-36,-43,-37,-39, 56,-42, -5,-18,-31,-13,-13,-36,-47,-29,-28,-31,-29,-23,  7,101;
/M: SY='N'; M=  5,-37, 15,-10,-43, 44,-19,-42,-16,-41,-11, 44,-32, 34,  4,  5,-20,-38,-44,-33;
/M: SY='G'; M=-13,-40, -2,-36,-46, 86,-33,-54,-32,-49,-39,-13,-31,-30,-40,-13,-31,-47,-38,-41;
/M: SY='Q'; M=-19,-39,-16, 22,-42,-28,  4,-39, 32,-31,-27,-13,-28, 56, 27, 34, -6,-35,-40,-27;
/M: SY='V'; M= -4,  2,-41,-13, -7,-43,-37, 19,-33, -2, 58,-37,-38,-32,-35,-29,-17, 61,-45,-22;
/M: SY='C'; M= -5, 56,-34,-34, -2,-37, 20,  8,-30, 11,  7, -1,-42,-28,-17, -5,-14, 16,-26, 52;
/M: SY='V'; M= -9,-30,-43,-37, -4,-44,-44, 19,-14,  0,  5,-37,-40,-36,-35,-27,  1, 71,-47,-23;
/M: SY='F'; M=-34,-35,-46,-43, 90,-43,-28, -4,-39,  2,-13,-37,-46,-44,-37,-12,-15, -4, -7, 36;
/M: SY='D'; M=-27,-40, 75, 19,-46,-25, 17,-45,-15,-45,-39, 47, -1,  3,-23, -1,-18,-44,-59,-32;
/I:         I=-28; MD=-71;
/M: SY='D'; M=-21,-45, 51,  9,-44, 10,  3,-49,-24,-48,-42, 25,-10,-21,-17, 13,-17,-46,-52, -1; D=-28;
/I:         I=-28; MI=0; MD=-71; IM=0; DM=-71;
/M: SY='V'; M=-19, 17,-47,-42, 40,-47,-40, 31,-39, 11, -6,-41,-44,-41,-40,-32,-20, 55,-31, 11;
/M: SY='P'; M=-16,-39,-25,-19,-40,-20,  5,-32,-23,-30,-28,-21, 81,  2,-31, 18, 43,-30,-45,-34;
/M: SY='P'; M= 31,-39,-25,  6,-41,-26, 24,-29,-19,-34,-26,-26, 71,  4,  2, -5,-20, -4,-43,-33;
/M: SY='E'; M=-16,-41, 45, 58,-21,-18,-18,-37,-12,-11,-29,  9,-26, 26,-19, -3,-12,-35,-45,-30;
/M: SY='K'; M=-15,-40,-19,  1,-42,-18,-21,-40, 76,-38, -7,-12,-27, 23, 17,-12,-21,-36,-36,-28;
/M: SY='A'; M= 54,-27,-37,-30,-28,-25,-39, 13,-31,-15,-15,-31,-34,-29,-34, -7,-15, 45,-43,-30;
/M: SY='Q'; M=  7,  2, -2, 30,-43,-10,-19,-24, 23,-35,-26,  4,-29, 58, 19, -9,-22,-21,-40,-30;
/M: SY='E'; M= 24,-35, 19, 44,-18,-28,-22,-28, -6, -5,-25,  2, -6,-12, -9,  3, -7,-12,-40,-11;
/M: SY='I'; M=-17,-37,-26,-22,  0,-48,-41, 59,-36, 24, -2,-38,-16,-34,-20,-33,-21, 35,-38,-20;
/M: SY='M'; M=-27,  0,-44,-38, 17,-25,-26, 24,-23, 36, 78,-19,-40,-29,-32,-34,-24,  2,-32, -1;
/M: SY='R'; M=-12,-36,  5, -4, -6,-18, 31,-21, -6, 16, 11,-11,-35, 11, 32, 11, -1, -8,-41,-20;
/M: SY='L'; M=-28, -8,-43,-37, 22,-26, 11, 24,-33, 41, 38,-37,-13,-31, -5,-34,-25, 14,-32,  0;
/M: SY='A'; M= 58,-27,-33,-27, -2, -9,-32,-19,-27,  9,-17,-26,-33,-25,-17,  6,  2, -3,-37,-26;
/M: SY='S'; M= 17,-33,  8,-20,-19, 24,-23,-25,  4,-27,-29, 21,-31, -2,  7, 32,  9,-28,-42,-30;
/M: SY='R'; M=  9,-38, -7,  9,-39, 22, 11,-23, 14,-27,-27, 15,-31, 21, 34,  3, -4,-32,-42,-29;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 19 in 18 different sequences
Number of true positive hits 19 in 18 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Feature key [info] DOMAIN
Feature description [info] Tify
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
18 sequences

GAT24_ARATH (Q8GXL7), GAT25_ARATH (Q9LRH6), GAT28_ARATH (Q8H1G0), 
TI10A_ARATH (Q9LMA8), TI10B_ARATH (Q9S7M2), TI11A_ARATH (Q9LDU5), 
TI11B_ARATH (Q9C9E3), TIF3A_ARATH (Q9M246), TIF3B_ARATH (Q9C5K8), 
TIF4A_ARATH (Q7XA73), TIF4B_ARATH (Q8GY55), TIF5A_ARATH (Q8LBM2), 
TIF5B_ARATH (O64687), TIF6A_ARATH (Q58G47), TIF6B_ARATH (Q9LVI4), 
TIF7_ARATH  (Q8W4J8), TIF8_ARATH  (Q84MB2), TIF9_ARATH  (Q93ZM9)
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