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Entry: PS51479

General information about the entry

Entry name [info] ZF_RTR1
Accession [info] PS51479
Entry type [info] MATRIX
Date [info] 01-JAN-2010 CREATED; 10-MAY-2017 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC51479
Associated ProRule [info] PRU00812

Name and characterization of the entry

Description [info] RTR1-type zinc finger.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=85;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=80;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.3290925; R2=0.0062325; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=9646.1787109; R2=6.9924307; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1312; H_SCORE=18820; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=991; H_SCORE=16576; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-17; D=-20; I=-20; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-105; BD=-105;
/M: SY='Y'; M= 15, 24, -2, 13, 26,-42,-12,-33, -7,  3,-30,  3,-47,-32,-37, 15, -4,-16,-36, 51;
/M: SY='A'; M= 35, 23,-46,-25,-32,-43, 27, 27,-17, 29, 26,-40,-47,-37,-42,  3,-15, -3,-52,-34;
/M: SY='L'; M= 12, 10,-44,-19,-34, 13,-41,-12,-36, 29,-24,-38,-28, -1,  6, 24,-30, 18,-50,-11;
/M: SY='R'; M=  1,  2,-38,-32,-43,-23, -1,  3, 18,-16,  9,  9, 10,-14, 53,  6,  0,-24, 21,-37;
/M: SY='F'; M=-19,-51, -9, -4, 59,-29, 20, -1,-40, 14,-25,-21, 25,-30,-24,-28,-28,-31, 22, 45;
/M: SY='F'; M=-43,-46,-57,-22, 64,-59,-43, 30,-50, 51, 37,-53,-55,-48,-49,-49,-38,-15,-35,-15;
/M: SY='T'; M=-24,-45, 11, -5,-49, -8, -6,-45,-10,-33,-38, -4,-39, 48,  8, 38, 56,-39,-57,-40;
/M: SY='P'; M=-39,-13,-36, -9,-56,-33, 10,-48, 23,-36,-39,-13, 90, 38, 18,-34,-34,-39,-53,-46;
/M: SY='S'; M=  4,-16,  8, 26,-50,-24,-20,-46,-12,-24, -6, -8, 14, 33,  5, 47,  8,-41,-55,-42;
/M: SY='D'; M=-20,-49, 63, 25,-49,-26, 43,-46,-28,-16,-24, 25,-41, 20,-34,  6, 14,-32,-63,-23;
/M: SY='Y'; M=-46,-54,-49,-49, 30,-54,-18,-27,-43, 10,  5,-49,-58,-38,-40,-43,-40,-32, 39,110;
/M: SY='D'; M= -5,-51, 67, 34,-50,-30,-10,-13,-19,-22, 16,-12,-41, 13,  6, 14,-24,-41,-60,-41;
/M: SY='D'; M=-23,-53, 87, 45,-58,-39,-27,-56,-26,-54,-13, 28,-39, -9,-34, -9,-30,-53,-68,-45;
/M: SY='V'; M= -6,-43,-57,-51,-24,-57,-52, 38,-50, 44,-11,-53,-53,-48,-51,-43,-22, 58,-53,-33;
/M: SY='I'; M=-18, 49,-55,-52, -8,-55,-56, 58,-49, -8,-18,-46,-51,-49,-52, -9, -1, 56,-55,-35;
/M: SY='E'; M= -2,-49, 34, 53,-44,-31, -3,  1, -4,  2,-32, -9,-40, 17,-32,-30,  9, -4,-56,-40;
/M: SY='E'; M=-21,-54, -7, 96,-57,-48,-28,-58,-17,-51,-47,  4,-31,-10,-27,-17,-34,-50,-56,-48;
/M: SY='R'; M=-42,-58,-38,-26,-51,-52,-27,-57,  8,-50,-39,-31,-50,-15,104,-36,-40,-51,-50,-37;
/M: SY='N'; M= 16,-43,-22,  4,-12,-32, 23,-31,-16,-34,-38, 75,-44,-26,  9, 13,  7,-41,-55, -3;
/M: SY='I'; M=  8, 10,-52,-48,-17,-29,-49, 65,-26, 20,-17,-43,-49,-42,-21,  9,-31,  5,-48,-13;
/M: SY='N'; M= 11,  0, 10, 28,-14,-12,-31,-10,-15, -5,-33, 56,-44,-15,-36,-11,-11, -7,-50, 13;
/M: SY='H'; M=-21,-50, 10, -8,-52, 36, 51,-55, 50,-43,-41, 33,-41, -9, -1, -9,-14,-51,-55,-39;
/I:         I=-5; MI=0; MD=-25; IM=0; DM=-25;
/M: SY='R'; M= -8,-48,-40, -9,-34,-49,-36, 16, 28, 33,  4, -1,-47, 14, 35,-26,-10,-18, -4,-34;
/M: SY='C'; M=-36,145,-56,-56,-46,-51,-56,-53,-52,-44,-44,-42,-67,-59,-58,-39,-36,-41,-76,-57;
/M: SY='G'; M=-12,-51,-39,-50,-57, 93,-45,-64,-44,-60,-49,-25,-43,-41,-51,-12,-41,-57,-49,-52;
/M: SY='Y'; M=-46,-55,-47,-49, 43,-51,-17,-31,-41,-27,-26,-27,-57,-38,-39,-23,-40,-37, 53,112;
/M: SY='P'; M=  2,-54,-43,-36,-15,-24,-44, 13,-39,-34,-34,-42, 93,-41,-48,-24, 21,-14,-48,  5;
/M: SY='L'; M=  5,-44,-54,-47, -4,-52,-42,  4,-37, 59, 30,-50, -4,-42,-30,-28,-13,  8,-46, -6;
/M: SY='C'; M=-36,145,-56,-56,-46,-51,-56,-53,-52,-44,-44,-42,-67,-59,-58,-39,-36,-41,-76,-57;
/M: SY='P'; M=  1, 11, 23, -6,-51, -2,-33,-50,-30,-43,-43, 26, 58,  5, -3, 39,-26,-46,-55,-14;
/M: SY='N'; M=-36,-48,-24,-26,-48,-25,  0,-47, 46,-26,-38, 71,-45, 18, 38,-11, -4,-34,-55,-20;
/M: SY='P'; M=  5,-48,-26,  9,-33,-37, -9,-39, 10,-30,-37, -8, 57, 25,-16, 38, -1, -1,-54,-42;
/M: SY='P'; M=-12,-51,-46,-36,  2,-49, 25,  1, -4, 34,  5,-42, 59,  0, 13,-26,-24,-13,-49,-32;
/I:         I=-1; MD=-5;
/M: SY='P'; M= -2,-53,-11, 13,-49,-12,-36,-28, 34,-21,-38,-19, 51, -8, 29, -4, -6,-33,-51,-16; D=-1;
/I:         I=-1; MD=-5;
/M: SY='N'; M=-20,-50,-29, -5,-51,-40,-13,-42, 38,-26,-39, 42,-45, 33, 41, 20, -4,-29,-56,-41; D=-1;
/I:         I=-1; MD=-5;
/M: SY='Q'; M= -4,-50, 15, 16,-23,-24,-40, 18,-10,-14,-33,  8,-18, 21,-38, 13, -7, 13,-56,-26; D=-1;
/I:         I=-1; MD=-5;
/M: SY='P'; M= -9,-53, 15,-28,-50,-28,-44,-23,-23,-28,-42,  8, 34,-39, -4, 15, 25,  5,-63,-18; D=-1;
/I:         I=-1; MD=-5;
/M: SY='P'; M=-28,-72,-57,-38,-72, -8, -7,-68,-16,-59,-27,-23, 23, -5, 20,  1,-31,-44,-75,-63; D=-1;
/I:         I=-1; MI=0; MD=-5; IM=0; DM=-5;
/M: SY='R'; M=-26,-56,-23,-19,-29, -9,-40,-54, 29,-55,-48, 16,-51,-30, 46, 17,  6,-25,-61,-47; D=-1;
/I:         I=-1; DM=-5;
/M: SY='Q'; M=-20, -1, 22,-29,-60, 47,-38,-58, -7,-56,-46,-27, -3, 54,  5, -5,  3,-54,-57,-48; D=-1;
/I:         I=-1; DM=-5;
/M: SY='K'; M=-30,-56,-16,-25,-55, -3, 12,-34, 53,-51,-14, -8, 28, 29, 41, -9,-24,-50,-53,-42; D=-1;
/I:         I=-1; DM=-5;
/M: SY='Y'; M=-49,-56,-56,-55, 69,-36,-28,-30,-48,-27,-29,-52,-60,-48,-46,-47,-44,-15, 73, 92; D=-1;
/I:         I=-1; DM=-5;
/M: SY='R'; M=-29,-55,-18, 13,-23,-36, 26,-48, 43,-48,-40,-30,-45, 32, 53,-10, -9,-12,-54,-38; D=-1;
/I:         I=-1; DM=-5;
/M: SY='I'; M=-40,-52,-24,-55,-17,-45,-56, 80,-53, 11, -5,-17,-52,-49,-56,-29,-34, 17,-52,-34; D=-1;
/I:         I=-1; DM=-5;
/M: SY='D'; M=-24, 21, 55, -9,-46,-27, 14,-38,-24,-26, -4, 17,-21,-30,-14, 40, -3,-20,-10, -6; D=-1;
/I:         I=-1; DM=-5;
/M: SY='W'; M=  4,-49,-10,-21,-38, -8, 12,-28,-36, 15,-12, 12,-31, 13, -5,-16, 28,-17, 65,-19; D=-1;
/I:         I=-1; DM=-5;
/M: SY='K'; M=  6,-50,-36, -6,-52,  6,-15,-31, 43,-47,  8,  3,-45,-27, 25, 21,-10,-16,-56,-44; D=-1;
/I:         I=-1; DM=-5;
/M: SY='T'; M= 12,-49, -6,  9,-49,  0, 24,-34, 11,-24,-40, -8, -9,-14, -4, 18, 28,-42,-57,-19; D=-1;
/I:         I=-1; DM=-5;
/M: SY='K'; M=-30,-55,-23,-25,-54,  4, 35,-28, 42,-51, -3, 38, 14,-28, 23, -9,-36,-26,-60,-43; D=-1;
/I:         I=-1; DM=-5;
/M: SY='K'; M=-22,-54,-36, -7, -7,  0,-38,-40, 56,-42,-44, 12,-47,-11, 32,  1,-19,-39,-53,-42; D=-1;
/I:         I=-1; DM=-5;
/M: SY='V'; M=-28,-50,-33,-50,  7,-58,-55, 40,-31,-13,  7,-48,-54,-11,-34, -1, -8, 52,-57,-36; D=-1;
/I:         I=-1; DM=-5;
/M: SY='Y'; M=-27,-56,-51,-35, 29, -3,-32, 12,-11, -8,-29,-47,-56,-42,-11,-42,-17,-10,-25, 81; D=-1;
/I:         I=-1; DM=-5;
/M: SY='D'; M=-45,-60, 69, 17,-51,-16,-38,-50,-18, -3,-45,-17, 20,  7,-24,-39,-40,-41, 32,-18; D=-1;
/I:         I=-1; DM=-5;
/M: SY='I'; M=-27,-58,-15,  1,-13,  4,-46, 31,-15,  1,  6,  3,-19,-22, 18,-43,-20,-31,-57,-43; D=-1;
/I:         I=-1; DM=-5;
/M: SY='T'; M=-26,-57,  3, 25,-59, -1,-10,-55,-17,-36,-49, 26,-49, 12, -4, -6, 27,-37,-67,-52; D=-1;
/I:         I=-1; DM=-5;
/M: SY='E'; M=-36,-62, -1, 44,-23,-17,-39,-44,  4,-57,-51, 18, -5,-31, 10,-40, -6,-56,-56, 17; D=-1;
/I:         I=-1; MI=0; MD=-5; IM=0; DM=-5;
/M: SY='L'; M= -8, -2,-47, -9,-30,-53,-40, -8,-26, 40, -3,-44,-53,-36, 31,-11, 13,-10,-49, 11; D=-1;
/I:         I=-1; DM=-5;
/M: SY='R'; M=-24,-51, 18, 34,-49,-42,-32,-51, 21,-33,-12,  6,-42,-12, 35, 34,  0,-47, -5, -9; D=-1;
/I:         I=-1; DM=-5;
/M: SY='M'; M=-20,  0,-35, -5,-40,-26,  1,-26, 37, -2, 51,  4,-14, 34,  3, 17,-12,-21,-49, -5;
/M: SY='W'; M=-48,-54,-56,-53, 80,-53,-32,-30,-46,-25,-29,-20,-58,-48,-45,-46,-44,-37,101, 80;
/M: SY='C'; M=-36,145,-56,-56,-46,-51,-56,-53,-52,-44,-44,-42,-67,-59,-58,-39,-36,-41,-76,-57;
/M: SY='S'; M=-18, 45,-31,-33,-49,-26,-34,-49,-33,-51,-45,  5,-40,-25,-37, 89, -5,-41,-59,-42;
/M: SY='K'; M=-15,-50, 40, 17,-54, -3,-30,-53, 49,-52,-44, 33,-21, 14, 10,-11, 11,-48,-56,-43;
/I:         I=-6; MI=0; MD=-32; IM=0; DM=-32;
/M: SY='E'; M= -3,-50, 33, 36, 22,-26,-19,-18,  4,-17,-11,  3,-26,  5,-11, -1,-23,-39, 34, 24;
/M: SY='C'; M=-38,132,-46,-46,-45,-50, 82,-55,-46,-43,-39,-34,-59,-45,-47,-37,-38,-45,-77,-39;
/M: SY='Y'; M= 20, 14,-49,-45, 44,-46,-29,-25,-27, 11, 30,-44,-53,-14,-21,-20,-35, -7,-24, 74;
/M: SY='R'; M=-15,-52,-13, 11,-25,-46,  5,-10, 41,-17, -2, 14,-44, 40, 41,-32,-34,-12,-46, 10;
/M: SY='C'; M= 45, 65, -9,-31,-45,-38,-35,-46, 17,-44, -5, -1,-47, -5, 47,-27,-21,-38,-50,  6;
/M: SY='S'; M= 34,-40,-32,-32,-49, -8,-35,-25,-32,-48,-41, 17,-10, -4,-37, 75,-17,-37,-55,-43;
/M: SY='Q'; M=-21, 15,-35, 25,-24,-30,-33, -6, 15, 29, 30, -5,-45, 46, 15,-23,-35,-31,-49,-35;
/M: SY='Y'; M=  0,-49,-27,-20, 62,-27, 26,-33,-22,-30,-30,-14,-51,  0,-38, -7,-12,-20, 35, 72;
/M: SY='Y'; M=-41,-48,-56,-53, 51,-59,-37, 36,-49, 28,-15,-52,-56,-48,-48,-46,-36, 27,-26, 66;
/M: SY='R'; M=-16,-51,-32,  6,-47,  1, -4,-44, 35, -5, 17,  5,-43, 38, 51,  5,-33,-43,-50,-38;
/M: SY='V'; M=  4,-45,-23, -5,-25,  2,-18,-17, 14,-14,-17, 35,-46, -6, 16,  2,-18, 36,-55,-39;
/M: SY='Q'; M=-33,-21,-30,  4,-57,-42,-25,-48, 15,-20,-33,-26,-42,102, 17,  5,-34,-48,-48,-36;
/M: SY='L'; M=-40,-45,-57,-48,-18,-60,-44, 23,-49, 71, 14,-54,-56,  5,-47,-49,-36,  8,-47,-29;
/I:         I=-6; MD=-32;
/M: SY='S'; M= 13,-45,  6,-17,-12,-17,-35,-36,-24,-17,-39, 10, 25, 17,-15, 59,-14,-32,-54,-40; D=-6;
/I:         I=-6; MI=-32; IM=-32; DM=-32;
/M: SY='E'; M=-36,-52, 37, 56,-32,-44, 28,-50, 12,-33,-41, 13,-11, 41,-17,-17, 18,-41,-57,-39;
/M: SY='E'; M=-25,-16, 11, 64,-52,-22, -5,-21,  5,-48,-43, 22, -5,-11, -4, 21, 11,-44,-57,-44;
/M: SY='P'; M= 37,-52, -9,-28,-56,-18,-39,-48,-29,-51,-41,-15, 84, 16, 15,  0,-31,-44,-53,-49;
/M: SY='L'; M= 18,  5,-11,-41,-30,-47,-44,  3,-25, 41,-19,-17, 28,-41,-32,-26,-22, 28,-51,-14;
/M: SY='W'; M=-28,-57,-26,  8, 48,-30, 17,-39,-39,-10,-36,  4,-50,-10,-42,-20,-43,-45,128, 23;
/M: SY='E'; M= 23, 21,-14, 29,-36, -8,-41,  4,-37, 26, -9,-16,-45,-33,-42,  2, -8,  7,  9,-38;
/M: SY='R'; M=-14,-53,-26,-18,-31,-29,-30,-46,  4,-29,-36,-31,-48,  1, 91,-18, -9,-12,-51,-37;
/M: SY='E'; M= -4,-49, 19, 22,-19, 13,-16,-12, 16,-28,-18, -6,  8,  4, 11, 13,  7,-18,-53,-40;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 14 in 14 different sequences
Number of true positive hits 14 in 14 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] ZN_FING
Feature description [info] RTR1-type
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
14 sequences

RPAP2_ARATH (F4K1B1    ), RPAP2_BOVIN (F6RRD7    ), RPAP2_CAEEL (P30641    ), 
RPAP2_DANRE (B0UYH6    ), RPAP2_DROME (A8DYY5    ), RPAP2_HUMAN (Q8IXW5    ), 
RPAP2_MOUSE (Q8VC34    ), RPAP2_ORYSI (A2Y040    ), RPAP2_ORYSJ (Q6AVZ9    ), 
RPAP2_PONAB (Q5RA37    ), RPAP2_RAT   (Q5I0E6    ), RPAP2_SCHPO (O42853    ), 
RTR1_YEAST  (P40084    ), RTR2_YEAST  (Q12378    )
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PDB
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1 PDB

5C2Y

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